Wall clock time and date at job start Tue Mar 31 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 120.00043 * 2 1 4 4 H 1.48490 * 109.46913 * 89.99868 * 3 2 1 5 5 H 1.48501 * 109.46895 * 209.99681 * 3 2 1 6 6 H 1.48498 * 109.47043 * 329.99434 * 3 2 1 7 7 C 1.37875 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00407 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99918 * 180.02562 * 7 2 1 10 10 O 1.42902 * 112.94298 * 50.33505 * 9 7 2 11 11 C 1.53943 * 113.74543 * 278.74571 * 9 7 2 12 12 N 1.47818 * 86.03730 * 222.08543 * 11 9 7 13 13 C 1.34773 * 134.45871 * 204.64681 * 12 11 9 14 14 O 1.21595 * 120.00619 * 174.30512 * 13 12 11 15 15 C 1.47521 * 119.99708 * 354.29888 * 13 12 11 16 16 C 1.39806 * 120.06983 * 351.89670 * 15 13 12 17 17 C 1.37606 * 119.93241 * 179.76393 * 16 15 13 18 18 C 1.39232 * 120.06778 * 0.53407 * 17 16 15 19 19 N 1.39092 * 119.93193 * 179.71742 * 18 17 16 20 20 C 1.39751 * 119.99821 * 142.67351 * 19 18 17 21 21 C 1.39335 * 120.49371 * 152.32636 * 20 19 18 22 22 C 1.38492 * 118.35729 * 180.02562 * 21 20 19 23 23 C 1.38281 * 119.24288 * 359.97438 * 22 21 20 24 24 N 1.31860 * 120.92949 * 0.02562 * 23 22 21 25 25 C 1.31815 * 121.79963 * 359.69798 * 24 23 22 26 26 C 1.39231 * 120.13580 * 359.69299 * 18 17 16 27 27 C 1.37611 * 120.06754 * 0.05015 * 26 18 17 28 28 C 1.47588 * 91.05074 * 24.54323 * 12 11 9 29 29 H 0.97001 * 119.99423 * 0.02562 * 1 2 3 30 30 H 0.96700 * 114.00002 * 309.66133 * 10 9 7 31 31 H 1.09011 * 113.76395 * 336.34308 * 11 9 7 32 32 H 1.08995 * 113.77388 * 107.74194 * 11 9 7 33 33 H 1.08004 * 120.03026 * 359.97438 * 16 15 13 34 34 H 1.07993 * 119.96740 * 180.24656 * 17 16 15 35 35 H 0.96999 * 120.00304 * 322.67746 * 19 18 17 36 36 H 1.08003 * 120.81944 * 0.02562 * 21 20 19 37 37 H 1.08003 * 120.37549 * 180.02562 * 22 21 20 38 38 H 1.07990 * 119.53335 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.67156 * 180.29512 * 25 24 23 40 40 H 1.08002 * 119.96710 * 180.02562 * 26 18 17 41 41 H 1.08003 * 120.03328 * 179.97438 * 27 26 18 42 42 H 1.08996 * 113.77061 * 221.15685 * 28 12 11 43 43 H 1.09004 * 113.76616 * 89.75772 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0682 -0.3539 1.0142 11 6 4.1319 -0.9802 -1.3914 12 7 5.0924 -2.0382 -1.0131 13 6 6.3443 -2.3576 -1.3965 14 8 6.9466 -3.2469 -0.8265 15 6 6.9840 -1.6282 -2.5079 16 6 6.2400 -0.7258 -3.2738 17 6 6.8407 -0.0434 -4.3067 18 6 8.1854 -0.2592 -4.5965 19 7 8.7883 0.4278 -5.6450 20 6 10.1094 0.8672 -5.5243 21 6 10.9097 1.0199 -6.6546 22 6 12.2126 1.4576 -6.4839 23 6 12.6729 1.7270 -5.2081 24 7 11.8901 1.5723 -4.1583 25 6 10.6426 1.1633 -4.2764 26 6 8.9279 -1.1607 -3.8386 27 6 8.3341 -1.8423 -2.8010 28 6 4.1313 -2.6025 -0.0456 29 1 -0.4849 0.8401 -0.0004 30 1 3.7023 0.5411 1.0278 31 1 3.4727 -1.2589 -2.2136 32 1 4.5872 0.0013 -1.5235 33 1 5.1956 -0.5620 -3.0527 34 1 6.2675 0.6567 -4.8961 35 1 8.2917 0.6019 -6.4598 36 1 10.5236 0.8025 -7.6395 37 1 12.8613 1.5877 -7.3375 38 1 13.6881 2.0681 -5.0695 39 1 10.0303 1.0530 -3.3936 40 1 9.9708 -1.3257 -4.0655 41 1 8.9104 -2.5418 -2.2137 42 1 4.5861 -2.9137 0.8948 43 1 3.4719 -3.3587 -0.4715 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447923425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:19 Heat of formation + Delta-G solvation = 26.219876 kcal Electronic energy + Delta-G solvation = -28152.871293 eV Core-core repulsion = 24164.407406 eV Total energy + Delta-G solvation = -3988.463887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83329 -41.37269 -40.13751 -39.05307 -36.81465 -36.27072 -34.54269 -33.30354 -32.29420 -32.00825 -30.60384 -29.46399 -27.44092 -27.22351 -24.89577 -24.67543 -23.49987 -23.04715 -21.83837 -20.60499 -19.41978 -18.80928 -18.64041 -18.37655 -18.05838 -17.70408 -17.14809 -16.78794 -16.52656 -15.81648 -15.70764 -15.41975 -15.26135 -15.09055 -14.90371 -14.82599 -14.57864 -14.27411 -14.23248 -14.05485 -13.98085 -13.69275 -13.55776 -13.00418 -12.92919 -12.64949 -12.48435 -12.42012 -11.98899 -11.88145 -11.48495 -11.09911 -10.90272 -10.69117 -10.49456 -10.44661 -10.14268 -10.09068 -9.67935 -8.52236 -8.41298 -6.53914 -0.35767 0.23631 0.30951 0.42489 1.27672 1.28805 1.41580 1.75699 1.82146 2.10295 2.18966 2.73783 2.79035 2.90991 3.20019 3.50033 3.63170 3.70437 3.81246 3.85503 3.87847 3.96245 4.14672 4.22224 4.25284 4.34227 4.38914 4.44322 4.53202 4.60127 4.64861 4.72517 4.79533 4.89707 4.94605 5.01992 5.11746 5.17594 5.20165 5.28841 5.38428 5.51740 5.70996 6.05665 6.15423 6.53284 6.54130 6.65693 6.73318 7.05726 7.06819 7.14527 8.73821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.002645 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.853609 B =10583.113877 C =11345.679569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.030 3.970 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.226 1.226 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.185 3.815 10 O -0.562 6.562 11 C 0.072 3.928 12 N -0.631 5.631 13 C 0.569 3.431 14 O -0.595 6.595 15 C -0.175 4.175 16 C -0.066 4.066 17 C -0.158 4.158 18 C 0.206 3.794 19 N -0.668 5.668 20 C 0.128 3.872 21 C -0.122 4.122 22 C -0.128 4.128 23 C 0.046 3.954 24 N -0.489 5.489 25 C 0.037 3.963 26 C -0.163 4.163 27 C -0.036 4.036 28 C 0.124 3.876 29 H 0.274 0.726 30 H 0.357 0.643 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.427 0.573 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.408 6.612 -19.382 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.171 4.171 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.150 1.150 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.144 3.856 10 O -0.374 6.374 11 C -0.050 4.050 12 N -0.363 5.363 13 C 0.362 3.638 14 O -0.479 6.479 15 C -0.179 4.179 16 C -0.085 4.085 17 C -0.178 4.178 18 C 0.107 3.893 19 N -0.293 5.293 20 C 0.028 3.972 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.112 4.112 24 N -0.197 5.197 25 C -0.124 4.124 26 C -0.184 4.184 27 C -0.056 4.056 28 C 0.002 3.998 29 H 0.083 0.917 30 H 0.209 0.791 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.267 0.733 36 H 0.183 0.817 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 21.437 5.838 -18.119 28.669 hybrid contribution -1.179 0.678 -0.514 1.454 sum 20.259 6.516 -18.633 28.285 Atomic orbital electron populations 1.69997 1.07977 1.28797 1.49185 1.25797 0.95580 1.02763 0.92994 0.86408 0.80340 0.79470 0.79942 1.18752 1.15004 1.20555 1.21305 0.89261 0.94658 1.52710 0.92429 1.20622 0.90990 0.88998 0.84995 1.86480 1.67442 1.26030 1.57412 1.24685 0.88278 0.91202 1.00853 1.49978 1.12324 1.32537 1.41490 1.18392 0.79990 0.82417 0.82962 1.90689 1.63979 1.35000 1.58239 1.19753 0.95776 1.03340 0.99080 1.21812 1.00870 0.92477 0.93301 1.21097 0.94414 1.02765 0.99567 1.17841 0.92148 0.90268 0.89064 1.41728 1.10738 1.59209 1.17665 1.18854 0.85848 0.97032 0.95485 1.21670 0.93634 1.01106 0.98703 1.22374 0.95831 0.97177 0.99392 1.23155 1.00624 0.99069 0.88386 1.67571 1.04811 1.11564 1.35799 1.22565 0.92920 1.00452 0.96455 1.20913 1.01074 0.97987 0.98462 1.21027 0.92613 0.96625 0.95335 1.23307 0.87676 0.96707 0.92124 0.91701 0.79093 0.86800 0.89034 0.83798 0.82087 0.73269 0.81724 0.81098 0.80812 0.84362 0.84739 0.85469 0.91324 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.44 13.96 21.45 0.30 -51.14 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.91 36.71 24.31 68.60 1.67 38.37 16 4 H -0.26 -10.30 7.05 99.48 0.70 -9.60 16 5 H -0.23 -7.94 5.16 99.48 0.51 -7.43 16 6 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.54 -27.60 9.19 25.60 0.24 -27.36 16 8 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 9 C 0.18 8.13 1.06 -10.88 -0.01 8.12 16 10 O -0.56 -25.62 13.35 -148.98 -1.99 -27.61 16 11 C 0.07 2.63 4.66 86.44 0.40 3.04 16 12 N -0.63 -24.91 3.60 -843.35 -3.03 -27.94 16 13 C 0.57 22.71 7.97 86.69 0.69 23.40 16 14 O -0.60 -27.50 17.10 -4.02 -0.07 -27.57 16 15 C -0.18 -5.56 5.88 -20.07 -0.12 -5.68 16 16 C -0.07 -1.69 9.03 22.50 0.20 -1.49 16 17 C -0.16 -3.02 9.95 22.36 0.22 -2.80 16 18 C 0.21 3.81 5.71 38.47 0.22 4.03 16 19 N -0.67 -8.65 5.42 -180.21 -0.98 -9.63 16 20 C 0.13 1.91 5.96 38.30 0.23 2.14 16 21 C -0.12 -1.21 10.10 22.59 0.23 -0.98 16 22 C -0.13 -1.16 10.10 22.34 0.23 -0.93 16 23 C 0.05 0.64 11.18 84.70 0.95 1.59 16 24 N -0.49 -10.33 10.35 -195.28 -2.02 -12.35 16 25 C 0.04 0.74 9.39 84.85 0.80 1.54 16 26 C -0.16 -3.60 8.03 22.36 0.18 -3.43 16 27 C -0.04 -1.02 9.58 22.50 0.22 -0.80 16 28 C 0.12 5.17 8.23 86.48 0.71 5.88 16 29 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.36 15.05 3.57 -74.06 -0.26 14.79 16 31 H 0.11 3.81 7.97 -2.38 -0.02 3.79 16 32 H 0.09 3.06 5.66 -2.39 -0.01 3.05 16 33 H 0.14 3.68 4.16 -2.91 -0.01 3.67 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.43 3.11 8.92 -92.71 -0.83 2.28 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 38 H 0.17 1.55 8.06 -2.92 -0.02 1.52 16 39 H 0.14 3.14 6.75 -2.91 -0.02 3.12 16 40 H 0.13 2.73 7.10 -2.91 -0.02 2.71 16 41 H 0.13 3.74 7.66 -2.91 -0.02 3.72 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.11 4.14 8.09 -2.39 -0.02 4.12 16 Total: -1.00 -71.16 355.50 -0.49 -71.65 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.20 Total: 37.94 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.84 Total: 8.28 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -5.73 Total: -101.06 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -2.06 Total: -55.18 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.67 Total: 38.37 kcal Total: -71.16 -0.49 -71.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447923425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.867 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds