Wall clock time and date at job start Tue Mar 31 2020 22:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21255 * 120.00105 * 2 1 4 4 C 1.47184 * 120.00194 * 179.97438 * 2 1 3 5 5 C 1.40034 * 120.51164 * 6.91818 * 4 2 1 6 6 C 1.39748 * 118.12420 * 180.23676 * 5 4 2 7 7 C 1.47703 * 120.48506 * 179.76268 * 6 5 4 8 8 O 1.21566 * 119.99929 * 125.60808 * 7 6 5 9 9 N 1.34781 * 119.99796 * 305.60358 * 7 6 5 10 10 C 1.37016 * 119.99992 * 7.90405 * 9 7 6 11 11 H 1.07994 * 119.99814 * 34.52195 * 10 9 7 12 12 C 1.38981 * 119.99543 * 214.52466 * 10 9 7 13 13 N 1.31371 * 119.99860 * 8.80509 * 12 10 9 14 14 Si 1.86796 * 119.99538 * 188.80595 * 12 10 9 15 15 H 1.48505 * 109.46702 * 90.00055 * 14 12 10 16 16 H 1.48496 * 109.47021 * 209.99750 * 14 12 10 17 17 H 1.48495 * 109.47308 * 330.00306 * 14 12 10 18 18 C 1.39349 * 119.99849 * 187.89704 * 9 7 6 19 19 C 1.39084 * 119.69994 * 15.69506 * 18 9 7 20 20 C 1.38376 * 119.09893 * 179.74272 * 19 18 9 21 21 C 1.38828 * 118.49179 * 0.50043 * 20 19 18 22 22 C 1.38153 * 119.31653 * 359.47795 * 21 20 19 23 23 N 1.31883 * 120.84989 * 0.27756 * 22 21 20 24 24 C 1.39793 * 119.02719 * 359.49483 * 6 5 4 25 25 C 1.50701 * 119.53606 * 180.27584 * 24 6 5 26 26 N 1.31738 * 120.93326 * 0.24638 * 24 6 5 27 27 C 1.31723 * 122.07765 * 0.02562 * 26 24 6 28 28 C 1.50710 * 119.56566 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47137 * 269.99986 * 1 2 3 30 30 H 1.09004 * 109.46987 * 29.99832 * 1 2 3 31 31 H 1.08997 * 109.47113 * 150.00544 * 1 2 3 32 32 H 1.07996 * 120.93584 * 0.02562 * 5 4 2 33 33 H 0.97007 * 119.99412 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.45025 * 359.97438 * 19 18 9 35 35 H 1.08000 * 120.75553 * 180.27551 * 20 19 18 36 36 H 1.07998 * 120.34803 * 179.75113 * 21 20 19 37 37 H 1.07998 * 119.57814 * 180.25234 * 22 21 20 38 38 H 1.08998 * 109.47493 * 93.66128 * 25 24 6 39 39 H 1.08995 * 109.47364 * 213.66986 * 25 24 6 40 40 H 1.09002 * 109.46903 * 333.66322 * 25 24 6 41 41 H 1.09000 * 109.46863 * 97.85435 * 28 27 26 42 42 H 1.09000 * 109.46764 * 217.85500 * 28 27 26 43 43 H 1.09000 * 109.46887 * 337.85619 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5613 -2.4893 -0.1442 6 6 2.3090 -3.6698 -0.1316 7 6 1.6428 -4.9803 -0.2750 8 8 2.0013 -5.7527 -1.1425 9 7 0.6374 -5.3196 0.5561 10 6 0.1247 -4.3928 1.4253 11 1 0.0669 -3.3542 1.1350 12 6 -0.3209 -4.7894 2.6806 13 7 -0.0945 -6.0131 3.1016 14 14 -1.2416 -3.5824 3.7690 15 1 -2.6979 -3.6804 3.4951 16 1 -0.9834 -3.9055 5.1952 17 1 -0.7758 -2.2020 3.4819 18 6 0.1193 -6.6130 0.5312 19 6 0.8329 -7.6292 -0.0953 20 6 0.3094 -8.9100 -0.1080 21 6 -0.9196 -9.1292 0.4995 22 6 -1.5735 -8.0727 1.1036 23 7 -1.0476 -6.8633 1.1045 24 6 3.6972 -3.5920 0.0130 25 6 4.5153 -4.8576 0.0218 26 7 4.3005 -2.4279 0.1411 27 6 3.6350 -1.2912 0.1400 28 6 4.3829 0.0086 0.2899 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 0.4877 -2.5131 -0.2589 33 1 -0.4059 -6.2899 3.9776 34 1 1.7845 -7.4222 -0.5622 35 1 0.8429 -9.7201 -0.5829 36 1 -1.3579 -10.1162 0.5037 37 1 -2.5278 -8.2393 1.5810 38 1 4.8701 -5.0680 -0.9871 39 1 5.3686 -4.7340 0.6886 40 1 3.8989 -5.6862 0.3704 41 1 4.5434 0.4509 -0.6933 42 1 3.8007 0.6938 0.9060 43 1 5.3456 -0.1790 0.7654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461245345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:52 Heat of formation + Delta-G solvation = 40.362398 kcal Electronic energy + Delta-G solvation = -29874.344193 eV Core-core repulsion = 25886.493572 eV Total energy + Delta-G solvation = -3987.850621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84185 -39.84598 -38.72472 -37.75940 -35.26426 -33.26798 -33.21005 -31.96949 -31.16651 -30.27038 -29.18471 -28.83036 -26.97241 -25.40209 -23.22750 -22.88997 -22.38712 -21.87457 -20.51757 -19.28853 -18.24892 -17.07957 -16.53156 -15.91990 -15.68089 -15.40248 -15.24335 -14.97082 -14.90192 -14.49763 -14.33024 -14.14997 -13.72847 -13.59838 -13.19186 -13.07718 -12.94604 -12.55087 -12.39514 -12.19401 -12.06999 -11.98154 -11.90082 -11.80703 -11.68896 -11.62811 -11.42733 -11.09601 -10.91531 -10.54781 -10.05390 -9.74430 -9.44998 -9.19045 -9.13481 -8.83838 -8.63517 -8.46202 -8.08139 -7.23044 -6.45803 -4.36106 0.65519 1.25792 2.12221 2.38550 2.45945 3.03044 3.09611 3.13313 3.41810 3.71396 4.00430 4.06502 4.20015 4.40653 4.79366 4.87265 4.91944 5.02444 5.18322 5.21708 5.41421 5.45809 5.58193 5.64465 5.66907 5.72411 5.75151 5.78625 5.89664 5.92893 5.98117 5.98944 6.07860 6.17740 6.24883 6.33517 6.37749 6.41763 6.75486 6.82671 6.94905 7.16438 7.18578 7.29016 7.54956 7.75388 8.09081 8.11851 8.65735 8.82020 9.32106 9.50079 10.49613 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004854 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.831943 B = 5767.035807 C = 7171.331559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.407 3.593 3 O -0.461 6.461 4 C -0.247 4.247 5 C 0.018 3.982 6 C -0.149 4.149 7 C 0.524 3.476 8 O -0.556 6.556 9 N -0.358 5.358 10 C -0.374 4.374 11 H 0.101 0.899 12 C 0.075 3.925 13 N -0.819 5.819 14 Si 0.920 3.080 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.386 3.614 19 C -0.209 4.209 20 C -0.078 4.078 21 C -0.232 4.232 22 C 0.113 3.887 23 N -0.440 5.440 24 C 0.205 3.795 25 C -0.105 4.105 26 N -0.500 5.500 27 C 0.195 3.805 28 C -0.106 4.106 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.272 0.728 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 4.015 -3.194 5.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.286 3.714 3 O -0.339 6.339 4 C -0.251 4.251 5 C -0.007 4.007 6 C -0.155 4.155 7 C 0.314 3.686 8 O -0.439 6.439 9 N -0.066 5.066 10 C -0.500 4.500 11 H 0.119 0.881 12 C -0.137 4.137 13 N -0.451 5.451 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.193 1.193 18 C 0.158 3.842 19 C -0.231 4.231 20 C -0.104 4.104 21 C -0.254 4.254 22 C -0.048 4.048 23 N -0.153 5.153 24 C 0.067 3.933 25 C -0.162 4.162 26 N -0.210 5.210 27 C 0.056 3.944 28 C -0.162 4.162 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.171 0.829 33 H 0.083 0.917 34 H 0.174 0.826 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.227 4.821 -2.946 6.073 hybrid contribution -1.274 -0.534 0.507 1.472 sum 0.952 4.287 -2.439 5.023 Atomic orbital electron populations 1.22262 0.93626 1.04913 1.05216 1.22228 0.91554 0.87071 0.70510 1.90467 1.71613 1.34335 1.37460 1.21122 0.95437 0.95580 1.12912 1.22174 1.00576 0.90053 0.87941 1.20467 0.94486 0.94527 1.05977 1.18005 0.80096 0.86469 0.83990 1.90558 1.65595 1.51723 1.36027 1.40945 1.25925 1.08622 1.31092 1.19524 1.45299 0.90333 0.94814 0.88111 1.25195 0.95727 0.96148 0.96651 1.69795 1.39308 1.17254 1.18712 0.86045 0.80261 0.80094 0.78999 1.19625 1.20738 1.19301 1.18238 0.89235 0.85438 0.91336 1.22527 1.03187 0.92366 1.05034 1.21157 0.95370 0.96152 0.97754 1.21700 0.98350 0.99812 1.05509 1.22206 0.98310 0.88150 0.96105 1.67186 1.11140 1.22268 1.14740 1.21518 0.89994 0.93798 0.87976 1.20808 0.99485 0.92419 1.03459 1.67429 1.39820 0.97357 1.16401 1.21664 0.89684 0.94309 0.88696 1.20997 0.99906 0.91838 1.03505 0.88110 0.89370 0.89360 0.82927 0.91679 0.82562 0.86587 0.86974 0.84767 0.89513 0.90483 0.89943 0.90039 0.88708 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.28 9.90 36.01 0.36 -1.93 16 2 C 0.41 5.79 7.15 -30.68 -0.22 5.57 16 3 O -0.46 -7.13 14.14 5.58 0.08 -7.06 16 4 C -0.25 -3.99 5.88 -104.97 -0.62 -4.60 16 5 C 0.02 0.31 7.39 -38.34 -0.28 0.03 16 6 C -0.15 -2.93 5.14 -104.89 -0.54 -3.47 16 7 C 0.52 11.60 5.90 -12.39 -0.07 11.53 16 8 O -0.56 -12.66 12.74 5.31 0.07 -12.59 16 9 N -0.36 -8.56 2.80 -61.75 -0.17 -8.73 16 10 C -0.37 -8.83 8.35 -14.96 -0.12 -8.95 16 11 H 0.10 2.17 4.46 -52.49 -0.23 1.93 16 12 C 0.08 1.81 4.68 -17.47 -0.08 1.73 16 13 N -0.82 -20.93 10.43 55.50 0.58 -20.35 16 14 Si 0.92 18.76 29.56 -169.99 -5.03 13.73 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 18 C 0.39 9.37 6.09 -154.70 -0.94 8.43 16 19 C -0.21 -4.64 8.85 -39.22 -0.35 -4.98 16 20 C -0.08 -1.49 10.17 -39.31 -0.40 -1.89 16 21 C -0.23 -4.25 10.11 -39.39 -0.40 -4.64 16 22 C 0.11 2.30 11.18 -17.56 -0.20 2.10 16 23 N -0.44 -10.51 6.89 -12.35 -0.09 -10.60 16 24 C 0.21 3.79 6.82 -82.05 -0.56 3.23 16 25 C -0.10 -1.71 9.40 36.01 0.34 -1.38 16 26 N -0.50 -8.85 10.15 -5.01 -0.05 -8.90 16 27 C 0.20 3.23 6.83 -82.01 -0.56 2.67 16 28 C -0.11 -1.45 8.80 36.01 0.32 -1.13 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.93 6.30 -51.93 -0.33 0.60 16 32 H 0.15 2.44 4.87 -52.49 -0.26 2.19 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.16 3.51 5.21 -52.69 -0.27 3.23 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.49 6.61 -51.93 -0.34 1.14 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.32 5.96 -51.93 -0.31 1.01 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -29.13 355.40 -8.27 -37.40 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.68 Total: 9.42 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -4.33 Total: 2.30 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.27 Total: -48.57 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.15 Total: -19.64 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.13 -8.27 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461245345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.763 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds