Wall clock time and date at job start Tue Mar 31 2020 22:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21255 * 120.00105 * 2 1 4 4 C 1.47184 * 120.00194 * 179.97438 * 2 1 3 5 5 C 1.40034 * 120.51164 * 6.91818 * 4 2 1 6 6 C 1.39748 * 118.12420 * 180.23676 * 5 4 2 7 7 C 1.47703 * 120.48506 * 179.76268 * 6 5 4 8 8 O 1.21566 * 119.99929 * 125.60808 * 7 6 5 9 9 N 1.34781 * 119.99796 * 305.60358 * 7 6 5 10 10 C 1.37016 * 119.99992 * 7.90405 * 9 7 6 11 11 H 1.07994 * 119.99814 * 34.52195 * 10 9 7 12 12 C 1.38981 * 119.99543 * 214.52466 * 10 9 7 13 13 N 1.31371 * 119.99860 * 8.80509 * 12 10 9 14 14 Si 1.86796 * 119.99538 * 188.80595 * 12 10 9 15 15 H 1.48505 * 109.46702 * 90.00055 * 14 12 10 16 16 H 1.48496 * 109.47021 * 209.99750 * 14 12 10 17 17 H 1.48495 * 109.47308 * 330.00306 * 14 12 10 18 18 C 1.39349 * 119.99849 * 187.89704 * 9 7 6 19 19 C 1.39084 * 119.69994 * 15.69506 * 18 9 7 20 20 C 1.38376 * 119.09893 * 179.74272 * 19 18 9 21 21 C 1.38828 * 118.49179 * 0.50043 * 20 19 18 22 22 C 1.38153 * 119.31653 * 359.47795 * 21 20 19 23 23 N 1.31883 * 120.84989 * 0.27756 * 22 21 20 24 24 C 1.39793 * 119.02719 * 359.49483 * 6 5 4 25 25 C 1.50701 * 119.53606 * 180.27584 * 24 6 5 26 26 N 1.31738 * 120.93326 * 0.24638 * 24 6 5 27 27 C 1.31723 * 122.07765 * 0.02562 * 26 24 6 28 28 C 1.50710 * 119.56566 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47137 * 269.99986 * 1 2 3 30 30 H 1.09004 * 109.46987 * 29.99832 * 1 2 3 31 31 H 1.08997 * 109.47113 * 150.00544 * 1 2 3 32 32 H 1.07996 * 120.93584 * 0.02562 * 5 4 2 33 33 H 0.97007 * 119.99412 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.45025 * 359.97438 * 19 18 9 35 35 H 1.08000 * 120.75553 * 180.27551 * 20 19 18 36 36 H 1.07998 * 120.34803 * 179.75113 * 21 20 19 37 37 H 1.07998 * 119.57814 * 180.25234 * 22 21 20 38 38 H 1.08998 * 109.47493 * 93.66128 * 25 24 6 39 39 H 1.08995 * 109.47364 * 213.66986 * 25 24 6 40 40 H 1.09002 * 109.46903 * 333.66322 * 25 24 6 41 41 H 1.09000 * 109.46863 * 97.85435 * 28 27 26 42 42 H 1.09000 * 109.46764 * 217.85500 * 28 27 26 43 43 H 1.09000 * 109.46887 * 337.85619 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5613 -2.4893 -0.1442 6 6 2.3090 -3.6698 -0.1316 7 6 1.6428 -4.9803 -0.2750 8 8 2.0013 -5.7527 -1.1425 9 7 0.6374 -5.3196 0.5561 10 6 0.1247 -4.3928 1.4253 11 1 0.0669 -3.3542 1.1350 12 6 -0.3209 -4.7894 2.6806 13 7 -0.0945 -6.0131 3.1016 14 14 -1.2416 -3.5824 3.7690 15 1 -2.6979 -3.6804 3.4951 16 1 -0.9834 -3.9055 5.1952 17 1 -0.7758 -2.2020 3.4819 18 6 0.1193 -6.6130 0.5312 19 6 0.8329 -7.6292 -0.0953 20 6 0.3094 -8.9100 -0.1080 21 6 -0.9196 -9.1292 0.4995 22 6 -1.5735 -8.0727 1.1036 23 7 -1.0476 -6.8633 1.1045 24 6 3.6972 -3.5920 0.0130 25 6 4.5153 -4.8576 0.0218 26 7 4.3005 -2.4279 0.1411 27 6 3.6350 -1.2912 0.1400 28 6 4.3829 0.0086 0.2899 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 0.4877 -2.5131 -0.2589 33 1 -0.4059 -6.2899 3.9776 34 1 1.7845 -7.4222 -0.5622 35 1 0.8429 -9.7201 -0.5829 36 1 -1.3579 -10.1162 0.5037 37 1 -2.5278 -8.2393 1.5810 38 1 4.8701 -5.0680 -0.9871 39 1 5.3686 -4.7340 0.6886 40 1 3.8989 -5.6862 0.3704 41 1 4.5434 0.4509 -0.6933 42 1 3.8007 0.6938 0.9060 43 1 5.3456 -0.1790 0.7654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461245345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:51 Heat of formation + Delta-G solvation = 25.664166 kcal Electronic energy + Delta-G solvation = -29874.981556 eV Core-core repulsion = 25886.493572 eV Total energy + Delta-G solvation = -3988.487984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.28123 -41.33546 -40.04775 -39.28593 -36.95437 -34.58263 -34.54789 -33.71967 -32.77967 -31.49624 -30.60075 -30.09630 -28.24874 -27.13940 -24.71582 -24.30699 -23.91923 -23.27185 -21.95665 -20.76542 -19.82113 -18.55029 -17.93401 -17.35517 -17.26952 -16.89644 -16.54180 -16.50615 -16.32376 -15.95282 -15.74362 -15.45163 -15.16546 -15.13394 -14.68047 -14.53502 -14.17296 -14.04864 -13.71888 -13.47355 -13.45929 -13.25469 -13.16885 -13.08723 -12.98502 -12.90322 -12.86466 -12.65904 -12.53373 -12.11877 -11.39522 -11.38365 -10.92132 -10.76884 -10.50254 -10.33140 -10.25913 -9.89835 -9.72693 -8.93037 -8.20726 -6.16199 -0.64806 -0.14364 0.53543 0.80162 1.24648 1.41992 1.46633 1.53818 1.81994 2.16726 2.46061 2.67245 2.90361 3.12800 3.16989 3.50968 3.53892 3.56888 3.68047 4.03589 4.10082 4.19809 4.23374 4.30937 4.44619 4.57489 4.60386 4.62349 4.62784 4.64190 4.65694 4.72768 4.75110 4.81315 4.93944 5.05742 5.10897 5.17645 5.19746 5.34394 5.45852 5.50274 5.60330 5.67295 6.08200 6.41476 6.42660 6.73087 6.94619 7.09793 7.61048 7.83903 8.73280 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004854 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.831943 B = 5767.035807 C = 7171.331559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.410 3.590 3 O -0.472 6.472 4 C -0.248 4.248 5 C 0.021 3.979 6 C -0.177 4.177 7 C 0.524 3.476 8 O -0.572 6.572 9 N -0.374 5.374 10 C -0.383 4.383 11 H 0.116 0.884 12 C 0.033 3.967 13 N -0.853 5.853 14 Si 0.975 3.025 15 H -0.272 1.272 16 H -0.290 1.290 17 H -0.248 1.248 18 C 0.355 3.645 19 C -0.233 4.233 20 C -0.076 4.076 21 C -0.217 4.217 22 C 0.095 3.905 23 N -0.469 5.469 24 C 0.194 3.806 25 C -0.099 4.099 26 N -0.505 5.505 27 C 0.187 3.813 28 C -0.100 4.100 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.266 0.734 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 4.824 -3.267 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.290 3.710 3 O -0.350 6.350 4 C -0.251 4.251 5 C -0.004 4.004 6 C -0.182 4.182 7 C 0.315 3.685 8 O -0.457 6.457 9 N -0.083 5.083 10 C -0.509 4.509 11 H 0.134 0.866 12 C -0.176 4.176 13 N -0.485 5.485 14 Si 0.799 3.201 15 H -0.197 1.197 16 H -0.216 1.216 17 H -0.171 1.171 18 C 0.127 3.873 19 C -0.255 4.255 20 C -0.102 4.102 21 C -0.238 4.238 22 C -0.065 4.065 23 N -0.183 5.183 24 C 0.057 3.943 25 C -0.156 4.156 26 N -0.216 5.216 27 C 0.048 3.952 28 C -0.156 4.156 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.180 0.820 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.576 5.643 -3.036 6.599 hybrid contribution -1.049 -0.845 0.456 1.422 sum 0.526 4.798 -2.580 5.473 Atomic orbital electron populations 1.22305 0.90946 1.06266 1.06192 1.22475 0.92807 0.85866 0.69837 1.90466 1.72196 1.34340 1.38018 1.21401 0.95550 0.96161 1.12006 1.22274 1.01004 0.89811 0.87323 1.20446 0.95192 0.94066 1.08464 1.18355 0.79692 0.87221 0.83252 1.90520 1.65990 1.52602 1.36545 1.41177 1.26687 1.08886 1.31513 1.19931 1.44915 0.91107 0.94903 0.86631 1.25988 0.96373 0.97437 0.97762 1.69949 1.40910 1.19005 1.18684 0.85200 0.78899 0.79284 0.76760 1.19705 1.21578 1.17108 1.18577 0.90072 0.86077 0.92529 1.22596 1.03209 0.93701 1.06036 1.21601 0.95764 0.95766 0.97041 1.22114 0.97446 1.01097 1.03142 1.22790 0.99419 0.87941 0.96340 1.67136 1.11509 1.24243 1.15452 1.21743 0.89869 0.94711 0.88024 1.20768 0.99369 0.90973 1.04463 1.67496 1.39853 0.97409 1.16819 1.22243 0.90371 0.94937 0.87628 1.21031 1.00050 0.90282 1.04254 0.87111 0.87358 0.88747 0.81975 0.92392 0.83619 0.83042 0.82641 0.82364 0.88370 0.88724 0.92252 0.88869 0.88581 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.95 9.90 71.24 0.71 -3.24 16 2 C 0.41 10.81 7.15 28.04 0.20 11.01 16 3 O -0.47 -13.53 14.14 -2.95 -0.04 -13.57 16 4 C -0.25 -7.70 5.88 -20.09 -0.12 -7.82 16 5 C 0.02 0.73 7.39 23.07 0.17 0.90 16 6 C -0.18 -7.06 5.14 -20.03 -0.10 -7.16 16 7 C 0.52 24.01 5.90 86.74 0.51 24.52 16 8 O -0.57 -27.17 12.74 -3.92 -0.05 -27.22 16 9 N -0.37 -18.42 2.80 -467.55 -1.31 -19.73 16 10 C -0.38 -18.34 8.35 84.06 0.70 -17.64 16 11 H 0.12 4.95 4.46 -2.91 -0.01 4.94 16 12 C 0.03 1.60 4.68 84.94 0.40 2.00 16 13 N -0.85 -44.63 10.43 21.67 0.23 -44.40 16 14 Si 0.98 38.23 29.56 68.60 2.03 40.26 16 15 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 16 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 18 C 0.36 17.71 6.09 132.93 0.81 18.52 16 19 C -0.23 -10.57 8.85 22.51 0.20 -10.37 16 20 C -0.08 -2.80 10.17 22.44 0.23 -2.57 16 21 C -0.22 -7.45 10.11 22.39 0.23 -7.23 16 22 C 0.10 3.79 11.18 84.66 0.95 4.74 16 23 N -0.47 -22.74 6.89 -192.99 -1.33 -24.07 16 24 C 0.19 7.25 6.82 42.95 0.29 7.55 16 25 C -0.10 -3.31 9.40 71.24 0.67 -2.64 16 26 N -0.51 -17.61 10.15 -169.77 -1.72 -19.33 16 27 C 0.19 5.96 6.83 42.98 0.29 6.25 16 28 C -0.10 -2.54 8.80 71.24 0.63 -1.92 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.09 1.76 6.30 -2.39 -0.02 1.74 16 32 H 0.16 5.11 4.87 -2.91 -0.01 5.09 16 33 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 34 H 0.15 6.82 5.21 -6.13 -0.03 6.79 16 35 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.16 5.30 8.06 -2.91 -0.02 5.28 16 38 H 0.10 2.99 8.14 -2.39 -0.02 2.98 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.06 2.25 6.61 -2.39 -0.02 2.24 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 42 H 0.10 2.47 5.96 -2.39 -0.01 2.46 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -64.60 355.40 5.62 -58.98 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 1.06 Total: 34.18 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.76 Total: 14.91 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.13 Total: -107.53 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.09 Total: -40.80 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -64.60 5.62 -58.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461245345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.641 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds