Wall clock time and date at job start Tue Mar 31 2020 23:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38225 * 120.41782 * 2 1 4 4 N 1.31864 * 120.75967 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.72442 * 359.69909 * 4 3 2 6 6 C 1.38184 * 120.76820 * 0.58902 * 5 4 3 7 7 S 1.76201 * 120.41782 * 179.70500 * 6 5 4 8 8 O 1.42101 * 106.39951 * 156.18277 * 7 6 5 9 9 O 1.42092 * 106.40682 * 23.26209 * 7 6 5 10 10 N 1.65597 * 107.21740 * 269.71776 * 7 6 5 11 11 C 1.46506 * 119.99891 * 65.00419 * 10 7 6 12 12 C 1.52989 * 109.47243 * 164.99965 * 11 10 7 13 13 C 1.53349 * 109.42090 * 295.12458 * 12 11 10 14 14 C 1.53189 * 109.15350 * 178.67324 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46104 * 175.00010 * 12 11 10 26 26 C 1.38628 * 120.41645 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46888 * 269.98218 * 1 2 3 28 28 H 1.09000 * 109.47227 * 29.97698 * 1 2 3 29 29 H 1.08993 * 109.47197 * 149.97979 * 1 2 3 30 30 H 1.07990 * 119.62203 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.61813 * 180.31368 * 5 4 3 32 32 H 0.96998 * 120.00564 * 245.00414 * 10 7 6 33 33 H 1.09000 * 109.46657 * 44.99426 * 11 10 7 34 34 H 1.09008 * 109.46786 * 285.00276 * 11 10 7 35 35 H 1.08997 * 109.46256 * 55.02918 * 12 11 10 36 36 H 1.09001 * 109.68292 * 58.70967 * 13 12 11 37 37 H 1.08994 * 109.47524 * 298.51791 * 13 12 11 38 38 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 39 39 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 40 40 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 42 42 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 43 43 H 1.09000 * 109.49464 * 61.43304 * 25 12 11 44 44 H 1.08999 * 109.52117 * 301.35057 * 25 12 11 45 45 H 1.08002 * 120.79331 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 0.0049 6 6 3.5948 -1.1471 -0.0009 7 16 4.5394 -2.6346 -0.0015 8 8 3.6997 -3.6433 0.5430 9 8 5.8096 -2.3035 0.5425 10 7 4.8016 -3.0481 -1.5834 11 6 5.6137 -2.1822 -2.4420 12 6 6.0117 -2.9462 -3.7063 13 6 6.9246 -4.1187 -3.3274 14 6 7.2924 -4.8988 -4.5935 15 7 7.8747 -3.9703 -5.5720 16 6 9.0983 -4.2239 -6.1321 17 1 9.8332 -4.7979 -5.5871 18 6 9.3942 -3.7435 -7.4004 19 7 8.4244 -3.3438 -8.1954 20 14 11.1687 -3.6641 -7.9787 21 1 12.0621 -4.1689 -6.9053 22 1 11.3314 -4.5032 -9.1930 23 1 11.5228 -2.2577 -8.2977 24 6 7.1196 -2.7642 -5.9377 25 6 6.7531 -2.0051 -4.6586 26 6 2.2089 -1.1955 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.6676 2.1276 -0.0004 31 1 5.3047 0.1284 0.0094 32 1 4.4175 -3.8636 -1.9417 33 1 6.5113 -1.8764 -1.9044 34 1 5.0367 -1.2994 -2.7174 35 1 5.1164 -3.3278 -4.1970 36 1 6.4057 -4.7781 -2.6317 37 1 7.8316 -3.7365 -2.8592 38 1 6.3971 -5.3576 -5.0130 39 1 8.0188 -5.6733 -4.3473 40 1 8.6311 -3.0078 -9.0815 41 1 7.7329 -2.1288 -6.5767 42 1 6.2115 -3.0488 -6.4692 43 1 7.6617 -1.6427 -4.1777 44 1 6.1116 -1.1600 -4.9083 45 1 1.6888 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475092782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:56 Heat of formation + Delta-G solvation = -28.536527 kcal Electronic energy + Delta-G solvation = -27372.243134 eV Core-core repulsion = 23516.848783 eV Total energy + Delta-G solvation = -3855.394351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.66520 -38.19306 -37.43040 -36.06873 -35.33239 -34.14251 -32.75445 -32.63573 -30.66916 -29.64650 -27.87468 -26.55661 -24.57113 -23.91679 -23.04166 -22.15254 -21.19426 -19.78061 -19.08332 -18.06492 -17.67500 -17.23856 -16.98462 -16.65562 -16.04695 -14.92339 -14.86755 -14.72118 -14.39431 -14.21697 -13.90554 -13.68111 -13.51089 -13.33352 -13.25870 -13.16873 -12.87733 -12.72868 -12.42633 -12.32542 -12.20794 -12.13356 -11.88205 -11.54455 -11.35670 -10.99745 -10.72825 -10.63290 -10.51702 -10.24386 -10.20963 -10.01976 -9.89564 -9.69976 -9.58923 -9.47460 -9.38974 -8.46965 -6.66272 -5.78811 -3.20894 0.01719 0.29474 0.68843 2.74950 3.12430 3.37470 3.45663 3.48068 3.52204 3.91755 3.93232 4.27321 4.37704 4.47837 4.50403 4.58011 4.89249 4.98728 5.06371 5.12374 5.15288 5.29433 5.34413 5.39131 5.44133 5.48239 5.59405 5.61756 5.79517 5.87298 6.04522 6.07233 6.17292 6.32391 6.49819 6.58746 6.66424 6.75739 6.82498 6.82828 7.00629 7.33379 7.36292 7.65150 7.80752 8.45921 9.22231 9.85743 10.42332 11.29780 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002533 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.120183 B =11052.763711 C =11570.148496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.161 4.161 3 C 0.150 3.850 4 N -0.491 5.491 5 C 0.194 3.806 6 C -0.729 4.729 7 S 2.702 3.298 8 O -0.960 6.960 9 O -0.950 6.950 10 N -1.109 6.109 11 C 0.117 3.883 12 C -0.082 4.082 13 C -0.129 4.129 14 C 0.144 3.856 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.172 3.828 25 C -0.135 4.135 26 C 0.024 3.976 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.174 0.826 32 H 0.420 0.580 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 7.106 16.425 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.163 4.163 3 C -0.007 4.007 4 N -0.199 5.199 5 C 0.035 3.965 6 C -0.815 4.815 7 S 2.788 3.212 8 O -0.950 6.950 9 O -0.939 6.939 10 N -0.871 5.871 11 C -0.008 4.008 12 C -0.103 4.103 13 C -0.168 4.168 14 C 0.018 3.982 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.046 3.954 25 C -0.175 4.175 26 C -0.003 4.003 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.181 0.819 31 H 0.191 0.809 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.798 7.711 17.057 24.495 hybrid contribution -0.191 -0.394 -0.887 0.989 sum -15.989 7.317 16.170 23.889 Atomic orbital electron populations 1.20756 0.89280 1.03730 1.03054 1.21065 0.98216 0.94202 1.02844 1.23103 0.90113 0.97877 0.89625 1.67869 1.08259 1.30815 1.12966 1.22671 1.00811 0.86052 0.86971 1.32126 1.08347 1.21738 1.19327 1.01781 0.73728 0.73041 0.72623 1.93589 1.69054 1.55855 1.76508 1.93611 1.39392 1.84571 1.76364 1.55430 1.65750 1.34962 1.30939 1.21599 0.94161 0.92287 0.92776 1.21298 0.99003 0.96568 0.93382 1.22136 0.98864 0.96852 0.98994 1.20904 0.96247 0.92092 0.88978 1.44063 1.19483 1.20261 1.47753 1.19236 0.89705 1.32430 0.96562 0.91679 1.25042 0.97398 1.01985 0.95324 1.70037 1.29929 1.47184 1.07716 0.86238 0.84922 0.77385 0.78344 1.20244 1.21787 1.21572 1.20751 0.95146 0.88149 0.91380 1.22220 0.99001 0.97342 0.98985 1.21263 0.91691 0.99433 0.87872 0.90511 0.90749 0.90786 0.81949 0.80884 0.74377 0.90094 0.92235 0.91150 0.93035 0.91968 0.96632 0.92861 0.93737 0.89433 0.96491 0.92226 0.93149 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.04 36.01 0.36 -0.14 16 2 C -0.16 -1.21 5.90 -104.48 -0.62 -1.83 16 3 C 0.15 1.23 10.86 -17.54 -0.19 1.04 16 4 N -0.49 -5.26 10.36 -13.25 -0.14 -5.40 16 5 C 0.19 2.05 10.69 -17.55 -0.19 1.86 16 6 C -0.73 -7.31 5.96 -39.44 -0.24 -7.54 16 7 S 2.70 29.82 5.75 -107.50 -0.62 29.20 16 8 O -0.96 -12.41 17.36 -57.17 -0.99 -13.41 16 9 O -0.95 -13.15 16.77 -57.17 -0.96 -14.11 16 10 N -1.11 -11.39 5.51 -10.61 -0.06 -11.45 16 11 C 0.12 1.38 5.61 -4.04 -0.02 1.35 16 12 C -0.08 -1.22 2.18 -90.42 -0.20 -1.41 16 13 C -0.13 -2.11 5.28 -26.45 -0.14 -2.25 16 14 C 0.14 2.93 6.50 -3.71 -0.02 2.90 16 15 N -0.59 -14.51 2.99 -172.32 -0.52 -15.02 16 16 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 17 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -25.95 11.20 55.49 0.62 -25.33 16 20 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 25 C -0.14 -2.37 5.36 -26.61 -0.14 -2.51 16 26 C 0.02 0.21 9.33 -39.28 -0.37 -0.16 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.17 1.63 7.62 -52.48 -0.40 1.23 16 32 H 0.42 3.78 8.37 -34.47 -0.29 3.49 16 33 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 34 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.71 7.52 -51.93 -0.39 0.32 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.15 1.07 7.71 -52.49 -0.40 0.66 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -34.29 376.93 -10.83 -45.12 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.81 Total: -0.09 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.01 Total: -11.76 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.09 Total: -57.20 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.95 Total: -27.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 16 Polarization: 29.82 SS G_CDS: -0.62 Total: 29.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.29 -10.83 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475092782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.585 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds