Wall clock time and date at job start Tue Mar 31 2020 23:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38225 * 120.41782 * 2 1 4 4 N 1.31864 * 120.75967 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.72442 * 359.69909 * 4 3 2 6 6 C 1.38184 * 120.76820 * 0.58902 * 5 4 3 7 7 S 1.76201 * 120.41782 * 179.70500 * 6 5 4 8 8 O 1.42101 * 106.39951 * 156.18277 * 7 6 5 9 9 O 1.42092 * 106.40682 * 23.26209 * 7 6 5 10 10 N 1.65597 * 107.21740 * 269.71776 * 7 6 5 11 11 C 1.46506 * 119.99891 * 65.00419 * 10 7 6 12 12 C 1.52989 * 109.47243 * 164.99965 * 11 10 7 13 13 C 1.53349 * 109.42090 * 295.12458 * 12 11 10 14 14 C 1.53189 * 109.15350 * 178.67324 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46104 * 175.00010 * 12 11 10 26 26 C 1.38628 * 120.41645 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46888 * 269.98218 * 1 2 3 28 28 H 1.09000 * 109.47227 * 29.97698 * 1 2 3 29 29 H 1.08993 * 109.47197 * 149.97979 * 1 2 3 30 30 H 1.07990 * 119.62203 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.61813 * 180.31368 * 5 4 3 32 32 H 0.96998 * 120.00564 * 245.00414 * 10 7 6 33 33 H 1.09000 * 109.46657 * 44.99426 * 11 10 7 34 34 H 1.09008 * 109.46786 * 285.00276 * 11 10 7 35 35 H 1.08997 * 109.46256 * 55.02918 * 12 11 10 36 36 H 1.09001 * 109.68292 * 58.70967 * 13 12 11 37 37 H 1.08994 * 109.47524 * 298.51791 * 13 12 11 38 38 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 39 39 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 40 40 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 42 42 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 43 43 H 1.09000 * 109.49464 * 61.43304 * 25 12 11 44 44 H 1.08999 * 109.52117 * 301.35057 * 25 12 11 45 45 H 1.08002 * 120.79331 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 0.0049 6 6 3.5948 -1.1471 -0.0009 7 16 4.5394 -2.6346 -0.0015 8 8 3.6997 -3.6433 0.5430 9 8 5.8096 -2.3035 0.5425 10 7 4.8016 -3.0481 -1.5834 11 6 5.6137 -2.1822 -2.4420 12 6 6.0117 -2.9462 -3.7063 13 6 6.9246 -4.1187 -3.3274 14 6 7.2924 -4.8988 -4.5935 15 7 7.8747 -3.9703 -5.5720 16 6 9.0983 -4.2239 -6.1321 17 1 9.8332 -4.7979 -5.5871 18 6 9.3942 -3.7435 -7.4004 19 7 8.4244 -3.3438 -8.1954 20 14 11.1687 -3.6641 -7.9787 21 1 12.0621 -4.1689 -6.9053 22 1 11.3314 -4.5032 -9.1930 23 1 11.5228 -2.2577 -8.2977 24 6 7.1196 -2.7642 -5.9377 25 6 6.7531 -2.0051 -4.6586 26 6 2.2089 -1.1955 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.6676 2.1276 -0.0004 31 1 5.3047 0.1284 0.0094 32 1 4.4175 -3.8636 -1.9417 33 1 6.5113 -1.8764 -1.9044 34 1 5.0367 -1.2994 -2.7174 35 1 5.1164 -3.3278 -4.1970 36 1 6.4057 -4.7781 -2.6317 37 1 7.8316 -3.7365 -2.8592 38 1 6.3971 -5.3576 -5.0130 39 1 8.0188 -5.6733 -4.3473 40 1 8.6311 -3.0078 -9.0815 41 1 7.7329 -2.1288 -6.5767 42 1 6.2115 -3.0488 -6.4692 43 1 7.6617 -1.6427 -4.1777 44 1 6.1116 -1.1600 -4.9083 45 1 1.6888 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475092782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:55 Heat of formation + Delta-G solvation = -52.863703 kcal Electronic energy + Delta-G solvation = -27373.298040 eV Core-core repulsion = 23516.848783 eV Total energy + Delta-G solvation = -3856.449257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31237 -39.60299 -38.40726 -37.03641 -36.69243 -34.71039 -34.35122 -33.35217 -32.32347 -31.29403 -28.36216 -28.09136 -25.58897 -25.20667 -23.75536 -23.63565 -22.68119 -20.90941 -20.33670 -18.95863 -18.65918 -18.33912 -17.94357 -17.71463 -17.03725 -16.70228 -15.80549 -15.75081 -15.46225 -15.34252 -15.26512 -14.79226 -14.76532 -14.33255 -14.26079 -13.89309 -13.81149 -13.73218 -13.60474 -13.29876 -13.23360 -13.18731 -13.12509 -12.99922 -12.77346 -12.55814 -12.28197 -12.23741 -11.95644 -11.80404 -11.53076 -11.33638 -11.14616 -11.09674 -10.71098 -10.52360 -10.38717 -10.17288 -8.64489 -7.86083 -5.30676 -0.77287 -0.45641 0.04359 1.45799 1.48143 1.58376 1.92469 2.41806 2.52235 2.70642 3.14711 3.28318 3.33548 3.70623 3.74299 3.76001 3.84266 3.87448 3.99261 4.01464 4.11480 4.38345 4.45730 4.58449 4.60338 4.65568 4.71838 4.72359 4.78955 4.80935 4.91569 4.99504 5.09886 5.10442 5.14063 5.25593 5.33966 5.36124 5.46748 5.50539 5.58660 5.68970 5.83542 6.05261 6.41902 6.67262 7.17935 7.90418 8.40636 9.19933 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002533 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.120183 B =11052.763711 C =11570.148496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.514 5.514 5 C 0.177 3.823 6 C -0.730 4.730 7 S 2.724 3.276 8 O -0.979 6.979 9 O -0.980 6.980 10 N -1.103 6.103 11 C 0.125 3.875 12 C -0.076 4.076 13 C -0.120 4.120 14 C 0.138 3.862 15 N -0.613 5.613 16 C -0.260 4.260 17 H 0.062 0.938 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.176 3.824 25 C -0.124 4.124 26 C 0.011 3.989 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.192 0.808 31 H 0.176 0.824 32 H 0.428 0.572 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.016 0.984 39 H 0.047 0.953 40 H 0.249 0.751 41 H 0.050 0.950 42 H -0.003 1.003 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.339 7.807 17.821 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.157 4.157 3 C -0.014 4.014 4 N -0.223 5.223 5 C 0.018 3.982 6 C -0.819 4.819 7 S 2.813 3.187 8 O -0.969 6.969 9 O -0.970 6.970 10 N -0.866 5.866 11 C -0.001 4.001 12 C -0.096 4.096 13 C -0.159 4.159 14 C 0.013 3.987 15 N -0.336 5.336 16 C -0.390 4.390 17 H 0.080 0.920 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.216 1.216 24 C 0.050 3.950 25 C -0.164 4.164 26 C -0.015 4.015 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.209 0.791 31 H 0.193 0.807 32 H 0.266 0.734 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.511 8.375 18.483 26.803 hybrid contribution 0.240 -0.617 -1.307 1.465 sum -17.271 7.759 17.176 25.564 Atomic orbital electron populations 1.20859 0.86905 1.04930 1.04086 1.21418 0.99854 0.93401 1.01058 1.23668 0.89541 0.99518 0.88671 1.67881 1.09617 1.30977 1.13833 1.22784 1.01212 0.86381 0.87819 1.31836 1.08859 1.20574 1.20588 1.00877 0.72875 0.72760 0.72215 1.93560 1.69341 1.57010 1.76987 1.93571 1.41236 1.85067 1.77151 1.55226 1.65667 1.35321 1.30393 1.21436 0.94826 0.92542 0.91270 1.21179 0.98478 0.95627 0.94300 1.22025 0.99236 0.97494 0.97184 1.21076 0.95818 0.92037 0.89765 1.44351 1.19221 1.21710 1.48351 1.19523 0.90973 1.31857 0.96663 0.91995 1.25756 1.00907 1.02390 0.95592 1.70179 1.31625 1.48426 1.07834 0.85260 0.80756 0.77040 0.77719 1.19333 1.21968 1.21580 1.20590 0.93271 0.87700 0.93407 1.22017 0.99704 0.97938 0.96758 1.21598 0.91343 1.00764 0.87826 0.89409 0.89150 0.90066 0.79092 0.80721 0.73433 0.90214 0.90055 0.90319 0.90024 0.92905 0.96594 0.93451 0.94164 0.93127 0.98463 0.92795 0.90669 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.04 71.24 0.72 0.10 16 2 C -0.15 -1.91 5.90 -19.77 -0.12 -2.03 16 3 C 0.14 2.00 10.86 84.68 0.92 2.92 16 4 N -0.51 -10.24 10.36 -195.84 -2.03 -12.27 16 5 C 0.18 3.52 10.69 84.67 0.90 4.43 16 6 C -0.73 -13.45 5.96 22.36 0.13 -13.32 16 7 S 2.72 56.07 5.75 -56.49 -0.32 55.75 16 8 O -0.98 -23.80 17.36 -128.00 -2.22 -26.02 16 9 O -0.98 -26.28 16.77 -128.00 -2.15 -28.43 16 10 N -1.10 -20.08 5.51 -187.49 -1.03 -21.11 16 11 C 0.13 2.62 5.61 86.37 0.48 3.11 16 12 C -0.08 -2.08 2.18 -10.66 -0.02 -2.11 16 13 C -0.12 -3.74 5.28 30.77 0.16 -3.58 16 14 C 0.14 5.59 6.50 86.36 0.56 6.15 16 15 N -0.61 -30.46 2.99 -699.08 -2.09 -32.55 16 16 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 17 H 0.06 3.39 7.89 -2.91 -0.02 3.36 16 18 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 19 N -0.93 -55.18 11.20 21.65 0.24 -54.93 16 20 Si 0.96 45.17 29.59 68.60 2.03 47.20 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.18 8.21 5.30 86.36 0.46 8.67 16 25 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 26 C 0.01 0.17 9.33 22.47 0.21 0.38 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.24 8.09 -2.39 -0.02 0.22 16 29 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 30 H 0.19 1.37 8.06 -2.92 -0.02 1.34 16 31 H 0.18 3.20 7.62 -2.91 -0.02 3.18 16 32 H 0.43 6.53 8.37 -96.75 -0.81 5.72 16 33 H 0.08 1.75 7.75 -2.39 -0.02 1.73 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.05 7.52 -2.39 -0.02 2.04 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.05 2.72 6.06 -2.39 -0.01 2.70 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.17 1.93 7.71 -2.91 -0.02 1.91 16 Total: -1.00 -75.32 376.93 -1.60 -76.91 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.18 Total: 10.84 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 5.80 Total: -15.37 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.91 Total: -120.87 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -4.37 Total: -54.45 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 56.07 SS G_CDS: -0.32 Total: 55.75 kcal Total: -75.32 -1.60 -76.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475092782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.049 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds