Wall clock time and date at job start Tue Mar 31 2020 22:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99663 * 2 1 4 4 H 1.48501 * 109.47468 * 240.00345 * 3 2 1 5 5 H 1.48499 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47330 * 120.00447 * 3 2 1 7 7 C 1.38951 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99443 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99689 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00145 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00113 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47343 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00427 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99449 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00072 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35897 * 117.00481 * 180.02562 * 20 19 18 22 22 C 1.38774 * 120.03441 * 359.72088 * 21 20 19 23 23 C 1.38138 * 119.99122 * 179.74971 * 22 21 20 24 24 C 1.38257 * 120.07872 * 0.53010 * 23 22 21 25 25 C 1.38476 * 120.08328 * 359.74048 * 24 23 22 26 26 F 1.35105 * 119.99874 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.00736 * 359.97438 * 25 24 23 28 28 H 0.97002 * 120.00169 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00335 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47424 * 59.99606 * 12 10 9 31 31 H 1.09005 * 109.46761 * 299.99890 * 12 10 9 32 32 H 0.97005 * 119.99508 * 359.97438 * 13 12 10 33 33 H 0.96992 * 120.00518 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 35 35 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 36 36 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 37 37 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.07996 * 120.00577 * 0.02562 * 22 21 20 41 41 H 1.07993 * 119.96226 * 180.27412 * 23 22 21 42 42 H 1.07999 * 119.95967 * 179.77480 * 24 23 22 43 43 H 1.07997 * 120.03638 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0017 15 8 0.5515 -7.4693 -0.0008 16 7 2.6228 -8.2714 -0.0016 17 6 2.1345 -9.6527 -0.0022 18 6 3.3244 -10.6143 -0.0026 19 6 2.8145 -12.0568 -0.0026 20 8 3.9260 -12.9550 -0.0024 21 6 3.6450 -14.2846 -0.0030 22 6 2.3259 -14.7157 0.0022 23 6 2.0412 -16.0674 -0.0036 24 6 3.0691 -16.9920 -0.0034 25 6 4.3865 -16.5654 -0.0029 26 9 5.3896 -17.4704 -0.0022 27 6 4.6757 -15.2120 -0.0031 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6176 -4.9205 -0.8913 31 1 0.6170 -4.9208 0.8887 32 1 3.1497 -5.7990 -0.0019 33 1 3.5763 -8.0942 -0.0019 34 1 1.5293 -9.8238 -0.8925 35 1 1.5286 -9.8242 0.8875 36 1 3.9300 -10.4434 0.8874 37 1 3.9300 -10.4426 -0.8925 38 1 2.2087 -12.2281 -0.8925 39 1 2.2093 -12.2282 0.8875 40 1 1.5220 -13.9945 0.0062 41 1 1.0145 -16.4023 -0.0040 42 1 2.8443 -18.0483 -0.0042 43 1 5.7030 -14.8788 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478602971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:02 Heat of formation + Delta-G solvation = -130.498465 kcal Electronic energy + Delta-G solvation = -26565.400479 eV Core-core repulsion = 22139.371550 eV Total energy + Delta-G solvation = -4426.028929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.39241 -40.65064 -39.89418 -38.27351 -37.90376 -35.74096 -34.41757 -33.67621 -32.47714 -31.39161 -31.17777 -30.16870 -27.84019 -25.98046 -24.38789 -23.55079 -22.81228 -21.83930 -20.73915 -19.60925 -19.09980 -18.41685 -17.94744 -17.11500 -16.95698 -16.78551 -16.51393 -16.08426 -16.07827 -15.65489 -15.58022 -14.99774 -14.74334 -14.62533 -14.32998 -14.24008 -13.96145 -13.86831 -13.50815 -13.23817 -12.88636 -12.63925 -12.48576 -12.19388 -12.09695 -11.99017 -11.78146 -11.63691 -11.46327 -11.16652 -11.10866 -10.51545 -10.32800 -10.11805 -9.63498 -9.42571 -9.25612 -8.84419 -8.65577 -8.63902 -8.10907 -6.52164 -3.94330 0.58952 0.75097 2.32088 2.87654 3.05176 3.13027 3.21088 3.24983 3.34059 3.74069 3.82827 4.07258 4.15437 4.32419 4.35538 4.42030 4.46765 4.54857 4.56795 4.76288 4.84467 4.88693 4.93055 4.98701 5.16474 5.24783 5.41349 5.54422 5.61630 5.64355 5.68388 5.78455 5.89706 5.98644 6.06734 6.16939 6.38468 6.71243 6.79309 7.01929 7.45000 7.91254 8.17475 8.44257 8.73174 9.03712 9.38503 9.86406 10.64594 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.048590 B = 0.001228 C = 0.001200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.117024 B =22789.567611 C =23334.633594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.723 5.723 14 C 0.705 3.295 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.145 3.855 18 C -0.133 4.133 19 C 0.063 3.937 20 O -0.309 6.309 21 C 0.163 3.837 22 C -0.220 4.220 23 C -0.049 4.049 24 C -0.194 4.194 25 C 0.138 3.862 26 F -0.134 7.134 27 C -0.192 4.192 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 -30.878 -0.012 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.405 3.595 15 O -0.477 6.477 16 N -0.407 5.407 17 C 0.020 3.980 18 C -0.170 4.170 19 C -0.013 4.013 20 O -0.222 6.222 21 C 0.117 3.883 22 C -0.239 4.239 23 C -0.067 4.067 24 C -0.213 4.213 25 C 0.119 3.881 26 F -0.113 7.113 27 C -0.212 4.212 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.576 -30.786 -0.011 30.993 hybrid contribution 0.627 0.853 -0.002 1.059 sum 4.203 -29.933 -0.012 30.227 Atomic orbital electron populations 1.69606 1.06008 1.28640 1.49198 1.25317 0.95653 0.99907 0.96741 0.85874 0.78782 0.80166 0.79149 1.19782 1.20845 1.19788 1.19682 0.93443 0.82029 1.48440 0.87733 1.41776 1.09486 1.04431 1.62605 1.19762 0.88299 0.85016 0.85588 1.90490 1.13751 1.86858 1.57411 1.20790 0.91196 0.84836 1.03165 1.44769 1.11310 1.03303 1.78690 1.15812 0.85129 0.80573 0.78003 1.90910 1.14035 1.84294 1.58434 1.44933 1.09244 1.04889 1.81589 1.20895 0.95015 0.79258 1.02814 1.21703 0.98998 0.91464 1.04880 1.22737 0.87871 0.88270 1.02411 1.86051 1.35356 1.12882 1.87956 1.18588 0.92572 0.83255 0.93861 1.21406 0.95514 0.97508 1.09426 1.20826 0.99303 0.91806 0.94803 1.21082 0.90874 1.01356 1.08014 1.17300 0.84829 0.85782 1.00206 1.91528 1.59834 1.66303 1.93621 1.20275 1.00265 0.90216 1.10410 0.91527 0.77005 0.89992 0.89983 0.75540 0.76756 0.91283 0.91271 0.89788 0.89784 0.91094 0.91101 0.84489 0.84519 0.84548 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 13.05 55.50 0.72 -22.96 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 10 C 0.43 9.68 7.85 -10.98 -0.09 9.60 16 11 O -0.60 -15.09 15.24 5.55 0.08 -15.00 16 12 C 0.13 2.35 6.15 -5.20 -0.03 2.31 16 13 N -0.72 -11.78 5.53 -66.42 -0.37 -12.15 16 14 C 0.71 10.92 8.57 -86.92 -0.74 10.18 16 15 O -0.60 -11.26 16.34 5.29 0.09 -11.18 16 16 N -0.75 -8.08 5.56 -65.22 -0.36 -8.44 16 17 C 0.15 1.23 5.67 -4.04 -0.02 1.20 16 18 C -0.13 -0.79 5.70 -26.74 -0.15 -0.94 16 19 C 0.06 0.35 4.74 37.16 0.18 0.53 16 20 O -0.31 -2.42 10.14 -19.42 -0.20 -2.62 16 21 C 0.16 1.25 6.68 -39.23 -0.26 0.99 16 22 C -0.22 -1.34 9.04 -39.42 -0.36 -1.70 16 23 C -0.05 -0.26 10.04 -39.61 -0.40 -0.66 16 24 C -0.19 -1.20 10.02 -39.49 -0.40 -1.59 16 25 C 0.14 1.07 7.30 -39.44 -0.29 0.78 16 26 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 27 C -0.19 -1.51 9.97 -39.37 -0.39 -1.90 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.40 9.35 7.90 -40.82 -0.32 9.02 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.41 6.41 7.45 -40.82 -0.30 6.11 16 33 H 0.40 3.37 8.49 -40.82 -0.35 3.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.33 7.67 -51.93 -0.40 -0.07 16 39 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 40 H 0.14 0.60 6.30 -52.49 -0.33 0.27 16 41 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -32.91 380.15 -7.95 -40.86 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.41 Total: 14.04 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -3.19 Total: 10.99 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.06 Total: -57.07 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.03 Total: -28.80 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.91 -7.95 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478602971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.634 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds