Wall clock time and date at job start Tue Mar 31 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99663 * 2 1 4 4 H 1.48501 * 109.47468 * 240.00345 * 3 2 1 5 5 H 1.48499 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47330 * 120.00447 * 3 2 1 7 7 C 1.38951 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99443 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99689 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00145 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00113 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47343 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00427 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99449 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00072 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35897 * 117.00481 * 180.02562 * 20 19 18 22 22 C 1.38774 * 120.03441 * 359.72088 * 21 20 19 23 23 C 1.38138 * 119.99122 * 179.74971 * 22 21 20 24 24 C 1.38257 * 120.07872 * 0.53010 * 23 22 21 25 25 C 1.38476 * 120.08328 * 359.74048 * 24 23 22 26 26 F 1.35105 * 119.99874 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.00736 * 359.97438 * 25 24 23 28 28 H 0.97002 * 120.00169 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00335 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47424 * 59.99606 * 12 10 9 31 31 H 1.09005 * 109.46761 * 299.99890 * 12 10 9 32 32 H 0.97005 * 119.99508 * 359.97438 * 13 12 10 33 33 H 0.96992 * 120.00518 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 35 35 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 36 36 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 37 37 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 40 40 H 1.07996 * 120.00577 * 0.02562 * 22 21 20 41 41 H 1.07993 * 119.96226 * 180.27412 * 23 22 21 42 42 H 1.07999 * 119.95967 * 179.77480 * 24 23 22 43 43 H 1.07997 * 120.03638 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0017 15 8 0.5515 -7.4693 -0.0008 16 7 2.6228 -8.2714 -0.0016 17 6 2.1345 -9.6527 -0.0022 18 6 3.3244 -10.6143 -0.0026 19 6 2.8145 -12.0568 -0.0026 20 8 3.9260 -12.9550 -0.0024 21 6 3.6450 -14.2846 -0.0030 22 6 2.3259 -14.7157 0.0022 23 6 2.0412 -16.0674 -0.0036 24 6 3.0691 -16.9920 -0.0034 25 6 4.3865 -16.5654 -0.0029 26 9 5.3896 -17.4704 -0.0022 27 6 4.6757 -15.2120 -0.0031 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6176 -4.9205 -0.8913 31 1 0.6170 -4.9208 0.8887 32 1 3.1497 -5.7990 -0.0019 33 1 3.5763 -8.0942 -0.0019 34 1 1.5293 -9.8238 -0.8925 35 1 1.5286 -9.8242 0.8875 36 1 3.9300 -10.4434 0.8874 37 1 3.9300 -10.4426 -0.8925 38 1 2.2087 -12.2281 -0.8925 39 1 2.2093 -12.2282 0.8875 40 1 1.5220 -13.9945 0.0062 41 1 1.0145 -16.4023 -0.0040 42 1 2.8443 -18.0483 -0.0042 43 1 5.7030 -14.8788 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478602971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:01 Heat of formation + Delta-G solvation = -154.175879 kcal Electronic energy + Delta-G solvation = -26566.427208 eV Core-core repulsion = 22139.371550 eV Total energy + Delta-G solvation = -4427.055658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98331 -41.24927 -41.06731 -40.01031 -38.43061 -36.65057 -36.16583 -35.24740 -33.40678 -33.14724 -31.72138 -30.68791 -29.24997 -27.00544 -25.98153 -24.06377 -23.40790 -22.40849 -21.90217 -21.34410 -20.10020 -19.64184 -19.45782 -17.70709 -17.49369 -17.47750 -17.36797 -17.13340 -16.89690 -16.88813 -16.59919 -16.46703 -15.94922 -15.89905 -15.49039 -15.16434 -15.03956 -14.95277 -14.72227 -13.93340 -13.77515 -13.73541 -13.52320 -13.33765 -13.17008 -13.00718 -12.88801 -12.50359 -12.47341 -12.45559 -12.12846 -11.93306 -11.62365 -11.54721 -11.44042 -10.53805 -10.42229 -10.08679 -9.93146 -9.80652 -9.33568 -8.49492 -5.99711 0.09106 0.26770 1.39304 1.43182 1.50152 1.56471 1.91785 2.05985 2.12838 2.30554 2.57097 3.07010 3.17915 3.30003 3.38986 3.72940 3.90821 3.92489 3.97003 4.01070 4.11973 4.23282 4.28998 4.40144 4.43533 4.45630 4.46566 4.49223 4.65493 4.98719 5.05613 5.07319 5.08782 5.21271 5.32443 5.33480 5.39923 5.47716 5.70210 5.92524 5.97099 6.30994 6.49886 7.03605 7.05037 7.44432 7.54265 7.96422 8.67107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.048590 B = 0.001228 C = 0.001200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.117024 B =22789.567611 C =23334.633594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.733 5.733 17 C 0.144 3.856 18 C -0.120 4.120 19 C 0.059 3.941 20 O -0.325 6.325 21 C 0.149 3.851 22 C -0.220 4.220 23 C -0.047 4.047 24 C -0.195 4.195 25 C 0.119 3.881 26 F -0.144 7.144 27 C -0.209 4.209 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.154 0.846 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -31.588 -0.013 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.513 6.513 16 N -0.390 5.390 17 C 0.020 3.980 18 C -0.158 4.158 19 C -0.016 4.016 20 O -0.238 6.238 21 C 0.103 3.897 22 C -0.238 4.238 23 C -0.065 4.065 24 C -0.214 4.214 25 C 0.099 3.901 26 F -0.123 7.123 27 C -0.228 4.228 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.171 0.829 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.027 -31.540 -0.011 31.685 hybrid contribution 0.806 0.974 -0.001 1.264 sum 3.833 -30.566 -0.012 30.806 Atomic orbital electron populations 1.69673 1.06991 1.29675 1.49219 1.26100 0.96499 1.02601 0.95750 0.84944 0.77732 0.76334 0.79076 1.19517 1.19662 1.19527 1.19709 0.92995 0.83598 1.50544 0.89558 1.41822 1.09589 1.04562 1.63449 1.20447 0.88133 0.85942 0.83495 1.90467 1.15184 1.87568 1.58025 1.20578 0.90984 0.83018 1.04077 1.44695 1.11043 1.03320 1.79184 1.15920 0.85126 0.80788 0.77769 1.90888 1.15650 1.84723 1.60068 1.44877 1.09447 1.04840 1.79839 1.21023 0.96031 0.78206 1.02725 1.21546 0.97864 0.91157 1.05210 1.22833 0.87592 0.87550 1.03598 1.86009 1.36426 1.13196 1.88192 1.18728 0.93217 0.83137 0.94630 1.21695 0.95281 0.98403 1.08460 1.21203 1.00494 0.91313 0.93445 1.21370 0.90305 1.02597 1.07128 1.17538 0.85396 0.85687 1.01429 1.91496 1.60391 1.66562 1.93860 1.20377 1.00522 0.90664 1.11248 0.91079 0.76681 0.89018 0.89012 0.75189 0.75228 0.91390 0.91380 0.89483 0.89477 0.89928 0.89933 0.82620 0.81588 0.82865 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.19 13.05 21.66 0.28 -47.91 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 41.31 29.55 68.60 2.03 43.34 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 8 H 0.09 4.93 7.16 -2.92 -0.02 4.91 16 9 N -0.56 -27.68 5.29 -306.99 -1.62 -29.30 16 10 C 0.43 19.61 7.85 87.66 0.69 20.30 16 11 O -0.62 -31.63 15.24 -3.07 -0.05 -31.68 16 12 C 0.14 5.08 6.15 85.63 0.53 5.61 16 13 N -0.72 -22.86 5.53 -482.30 -2.67 -25.53 16 14 C 0.70 20.91 8.57 179.06 1.53 22.44 16 15 O -0.63 -23.10 16.34 -4.00 -0.07 -23.16 16 16 N -0.73 -14.57 5.56 -478.54 -2.66 -17.24 16 17 C 0.14 2.17 5.67 86.38 0.49 2.66 16 18 C -0.12 -1.20 5.70 30.59 0.17 -1.03 16 19 C 0.06 0.56 4.74 71.98 0.34 0.90 16 20 O -0.32 -4.74 10.14 -92.39 -0.94 -5.68 16 21 C 0.15 2.16 6.68 22.50 0.15 2.31 16 22 C -0.22 -2.25 9.04 22.37 0.20 -2.05 16 23 C -0.05 -0.39 10.04 22.25 0.22 -0.17 16 24 C -0.20 -2.13 10.02 22.33 0.22 -1.91 16 25 C 0.12 1.82 7.30 22.36 0.16 1.98 16 26 F -0.14 -2.51 17.27 44.97 0.78 -1.74 16 27 C -0.21 -3.32 9.97 22.41 0.22 -3.09 16 28 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 30 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 32 H 0.41 12.54 7.45 -92.70 -0.69 11.85 16 33 H 0.41 6.17 8.49 -92.71 -0.79 5.39 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.58 7.67 -2.39 -0.02 0.57 16 39 H 0.08 0.58 7.65 -2.39 -0.02 0.56 16 40 H 0.16 0.92 6.30 -2.91 -0.02 0.90 16 41 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 42 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -70.42 380.15 0.19 -70.24 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -1.12 Total: 38.36 kcal Atomic # 6 Polarization: 24.07 SS G_CDS: 6.22 Total: 30.30 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.67 Total: -119.98 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -1.05 Total: -60.52 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -70.42 0.19 -70.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478602971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.940 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds