Wall clock time and date at job start Tue Mar 31 2020 22:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48500 * 109.47175 * 240.00039 * 3 2 1 5 5 H 1.48503 * 109.46755 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47034 * 119.99659 * 3 2 1 7 7 C 1.39952 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00094 * 197.84419 * 7 2 1 9 9 C 1.41398 * 119.99895 * 17.84340 * 7 2 1 10 10 C 1.40710 * 120.24490 * 204.38432 * 9 7 2 11 11 C 1.37623 * 119.74732 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24226 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74221 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47158 * 90.00476 * 13 12 11 15 15 C 1.34784 * 120.00253 * 179.97438 * 14 13 12 16 16 O 1.21583 * 119.99453 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00233 * 179.97438 * 15 14 13 18 18 N 1.40107 * 119.99816 * 359.97438 * 17 15 14 19 19 C 1.34781 * 119.99898 * 180.02562 * 18 17 15 20 20 O 1.21553 * 119.99918 * 359.97438 * 19 18 17 21 21 C 1.47841 * 119.99768 * 180.02562 * 19 18 17 22 22 C 1.39586 * 120.13969 * 180.02562 * 21 19 18 23 23 C 1.37954 * 119.84978 * 179.97438 * 22 21 19 24 24 C 1.38362 * 120.14732 * 359.97438 * 23 22 21 25 25 C 1.38365 * 120.29239 * 0.04991 * 24 23 22 26 26 C 1.37961 * 120.14115 * 359.95001 * 25 24 23 27 27 C 1.38632 * 120.50600 * 0.25570 * 12 11 10 28 28 C 1.37626 * 120.24659 * 359.44861 * 27 12 11 29 29 H 0.96991 * 120.00188 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.12719 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.87848 * 180.02562 * 11 10 9 32 32 H 1.08995 * 109.47524 * 330.00013 * 13 12 11 33 33 H 1.09005 * 109.46909 * 209.99860 * 13 12 11 34 34 H 0.97001 * 119.99930 * 359.97438 * 14 13 12 35 35 H 0.97003 * 120.00400 * 179.97438 * 17 15 14 36 36 H 0.96990 * 120.00200 * 0.02562 * 18 17 15 37 37 H 1.07993 * 120.07383 * 359.69567 * 22 21 19 38 38 H 1.08000 * 119.92908 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.85434 * 180.02562 * 24 23 22 40 40 H 1.07994 * 119.92892 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.06849 * 180.02562 * 26 25 24 42 42 H 1.07993 * 119.87865 * 179.70097 * 27 12 11 43 43 H 1.07991 * 120.13003 * 180.27417 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6963 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2871 9 6 1.3520 -2.4073 -0.3741 10 6 1.8258 -3.6499 0.0857 11 6 1.1798 -4.8069 -0.2858 12 6 0.0665 -4.7512 -1.1103 13 6 -0.6318 -6.0252 -1.5105 14 7 -1.6749 -6.3388 -0.5308 15 6 -2.4351 -7.4411 -0.6851 16 8 -2.2553 -8.1748 -1.6378 17 7 -3.3943 -7.7298 0.2164 18 7 -3.6010 -6.8845 1.3144 19 6 -4.5599 -7.1736 2.2163 20 8 -5.2457 -8.1674 2.0768 21 6 -4.7784 -6.2812 3.3747 22 6 -5.7703 -6.5780 4.3108 23 6 -5.9687 -5.7415 5.3897 24 6 -5.1867 -4.6107 5.5452 25 6 -4.2020 -4.3105 4.6206 26 6 -3.9934 -5.1387 3.5372 27 6 -0.4055 -3.5330 -1.5739 28 6 0.2211 -2.3628 -1.2103 29 1 -0.4850 0.8399 -0.0004 30 1 2.6931 -3.6955 0.7277 31 1 1.5413 -5.7617 0.0662 32 1 0.0909 -6.8403 -1.5452 33 1 -1.0838 -5.8981 -2.4942 34 1 -1.8185 -5.7531 0.2290 35 1 -3.9416 -8.5230 0.1051 36 1 -3.0540 -6.0913 1.4255 37 1 -6.3841 -7.4581 4.1883 38 1 -6.7361 -5.9697 6.1145 39 1 -5.3457 -3.9593 6.3919 40 1 -3.5953 -3.4262 4.7476 41 1 -3.2242 -4.9035 2.8164 42 1 -1.2707 -3.5017 -2.2196 43 1 -0.1509 -1.4146 -1.5691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478879007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:55 Heat of formation + Delta-G solvation = 15.484348 kcal Electronic energy + Delta-G solvation = -27480.822439 eV Core-core repulsion = 23491.893025 eV Total energy + Delta-G solvation = -3988.929414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80414 -39.72042 -38.46867 -37.77740 -35.81192 -34.85491 -33.47771 -32.39212 -31.27060 -30.53932 -29.93383 -29.43350 -26.91177 -24.35163 -23.89237 -22.85089 -21.33701 -21.16993 -21.08528 -20.20700 -19.28044 -18.16468 -17.47279 -17.21756 -16.10249 -15.84880 -15.67021 -15.46390 -15.09141 -14.95636 -14.84361 -14.56267 -14.14062 -13.97975 -13.84535 -13.75440 -13.45855 -12.96896 -12.59678 -12.26771 -12.11489 -12.02606 -11.77792 -11.43649 -11.43450 -11.21577 -11.13385 -10.84422 -10.61628 -10.54084 -10.23321 -9.80147 -9.57019 -9.38675 -9.32207 -9.31136 -8.95765 -8.35981 -7.66733 -7.55171 -6.95736 -4.55258 0.48557 1.03311 1.68371 2.46133 2.47740 2.89342 2.94593 2.96331 3.00642 3.18977 3.36680 3.54866 3.78741 4.07053 4.44163 4.47532 4.61273 4.73782 4.92777 5.01887 5.13555 5.41739 5.50769 5.64090 5.65807 5.83923 5.91097 6.01202 6.11653 6.14850 6.16565 6.26657 6.32011 6.51548 6.55177 6.73518 6.79142 6.89250 7.09469 7.15664 7.17957 7.42456 7.55184 7.68928 7.87127 7.92703 8.10525 8.16796 8.45123 8.53852 8.70201 8.77701 9.98002 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.002995 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.744273 B = 9347.830773 C =11990.550808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.068 4.068 12 C -0.250 4.250 13 C 0.200 3.800 14 N -0.731 5.731 15 C 0.707 3.293 16 O -0.578 6.578 17 N -0.536 5.536 18 N -0.522 5.522 19 C 0.563 3.437 20 O -0.535 6.535 21 C -0.130 4.130 22 C -0.057 4.057 23 C -0.129 4.129 24 C -0.091 4.091 25 C -0.121 4.121 26 C -0.083 4.083 27 C -0.080 4.080 28 C -0.170 4.170 29 H 0.283 0.717 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.390 0.610 35 H 0.439 0.561 36 H 0.422 0.578 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -4.514 9.707 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.087 4.087 12 C -0.252 4.252 13 C 0.078 3.922 14 N -0.387 5.387 15 C 0.407 3.593 16 O -0.452 6.452 17 N -0.293 5.293 18 N -0.274 5.274 19 C 0.350 3.650 20 O -0.411 6.411 21 C -0.134 4.134 22 C -0.076 4.076 23 C -0.147 4.147 24 C -0.109 4.109 25 C -0.139 4.139 26 C -0.102 4.102 27 C -0.099 4.099 28 C -0.189 4.189 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.225 0.775 35 H 0.285 0.715 36 H 0.266 0.734 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.539 -5.481 8.825 14.103 hybrid contribution 0.352 1.279 0.483 1.412 sum -9.187 -4.201 9.308 13.737 Atomic orbital electron populations 1.69792 1.07645 1.29652 1.33981 1.25946 0.94764 1.01490 0.92038 0.86344 0.80212 0.79971 0.80157 1.18690 1.20211 1.18884 1.19654 0.98230 0.91279 1.39416 0.90258 1.17670 0.90838 0.92030 0.87955 1.20981 1.03989 0.92786 1.07236 1.20423 0.95035 0.96541 0.96688 1.18966 1.02224 0.92630 1.11337 1.19914 0.87155 0.95191 0.89905 1.45842 1.37636 1.25004 1.30227 1.15914 0.78921 0.82727 0.81739 1.91000 1.71465 1.51905 1.30867 1.44652 1.40021 1.26353 1.18305 1.44817 1.38301 1.25066 1.19178 1.18341 0.79161 0.85751 0.81699 1.90796 1.46814 1.27683 1.75857 1.19617 1.00667 0.96793 0.96368 1.21247 0.95168 0.99020 0.92157 1.21179 1.00323 0.95056 0.98126 1.21463 0.94388 0.96490 0.98567 1.21219 0.98453 1.00004 0.94251 1.21400 0.97753 0.93160 0.97916 1.20574 0.98075 0.92526 0.98726 1.21317 0.99555 0.96781 1.01238 0.90585 0.88873 0.89313 0.92162 0.92110 0.77542 0.71519 0.73443 0.84496 0.85134 0.85326 0.84720 0.85371 0.89333 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.53 10.95 55.55 0.61 -17.92 16 2 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.27 29.60 -169.99 -5.03 12.23 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.46 -11.16 9.05 -37.74 -0.34 -11.50 16 8 H 0.08 1.87 7.91 -52.49 -0.41 1.45 16 9 C 0.12 2.86 5.57 -106.82 -0.60 2.27 16 10 C -0.23 -5.11 9.80 -38.87 -0.38 -5.49 16 11 C -0.07 -1.35 9.67 -39.66 -0.38 -1.74 16 12 C -0.25 -4.80 5.27 -104.33 -0.55 -5.35 16 13 C 0.20 3.40 5.79 -5.20 -0.03 3.37 16 14 N -0.73 -11.04 5.51 -66.42 -0.37 -11.40 16 15 C 0.71 11.25 8.68 -86.92 -0.75 10.50 16 16 O -0.58 -11.15 17.18 5.29 0.09 -11.06 16 17 N -0.54 -7.25 6.26 27.63 0.17 -7.07 16 18 N -0.52 -6.05 6.21 30.53 0.19 -5.86 16 19 C 0.56 6.92 7.89 -12.33 -0.10 6.83 16 20 O -0.54 -8.03 16.19 5.32 0.09 -7.94 16 21 C -0.13 -1.35 5.87 -104.97 -0.62 -1.96 16 22 C -0.06 -0.53 9.60 -39.18 -0.38 -0.91 16 23 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 24 C -0.09 -0.66 10.04 -39.49 -0.40 -1.06 16 25 C -0.12 -1.00 10.03 -39.64 -0.40 -1.39 16 26 C -0.08 -0.76 9.54 -39.19 -0.37 -1.13 16 27 C -0.08 -1.67 9.67 -39.66 -0.38 -2.05 16 28 C -0.17 -3.99 8.70 -38.87 -0.34 -4.33 16 29 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 30 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 31 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.39 5.25 6.38 -40.82 -0.26 4.99 16 35 H 0.44 5.91 8.10 -182.59 -1.48 4.43 16 36 H 0.42 4.17 4.74 -182.60 -0.86 3.30 16 37 H 0.14 1.25 7.65 -52.49 -0.40 0.84 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.00 6.41 -52.48 -0.34 0.66 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.12 2.91 6.16 -52.49 -0.32 2.59 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -29.00 373.70 -11.71 -40.71 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -6.59 Total: 16.31 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -6.50 Total: -13.62 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.61 Total: -42.26 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.00 -11.71 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478879007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.190 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds