Wall clock time and date at job start Tue Mar 31 2020 22:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48500 * 109.47175 * 240.00039 * 3 2 1 5 5 H 1.48503 * 109.46755 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47034 * 119.99659 * 3 2 1 7 7 C 1.39952 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00094 * 197.84419 * 7 2 1 9 9 C 1.41398 * 119.99895 * 17.84340 * 7 2 1 10 10 C 1.40710 * 120.24490 * 204.38432 * 9 7 2 11 11 C 1.37623 * 119.74732 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24226 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74221 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47158 * 90.00476 * 13 12 11 15 15 C 1.34784 * 120.00253 * 179.97438 * 14 13 12 16 16 O 1.21583 * 119.99453 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00233 * 179.97438 * 15 14 13 18 18 N 1.40107 * 119.99816 * 359.97438 * 17 15 14 19 19 C 1.34781 * 119.99898 * 180.02562 * 18 17 15 20 20 O 1.21553 * 119.99918 * 359.97438 * 19 18 17 21 21 C 1.47841 * 119.99768 * 180.02562 * 19 18 17 22 22 C 1.39586 * 120.13969 * 180.02562 * 21 19 18 23 23 C 1.37954 * 119.84978 * 179.97438 * 22 21 19 24 24 C 1.38362 * 120.14732 * 359.97438 * 23 22 21 25 25 C 1.38365 * 120.29239 * 0.04991 * 24 23 22 26 26 C 1.37961 * 120.14115 * 359.95001 * 25 24 23 27 27 C 1.38632 * 120.50600 * 0.25570 * 12 11 10 28 28 C 1.37626 * 120.24659 * 359.44861 * 27 12 11 29 29 H 0.96991 * 120.00188 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.12719 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.87848 * 180.02562 * 11 10 9 32 32 H 1.08995 * 109.47524 * 330.00013 * 13 12 11 33 33 H 1.09005 * 109.46909 * 209.99860 * 13 12 11 34 34 H 0.97001 * 119.99930 * 359.97438 * 14 13 12 35 35 H 0.97003 * 120.00400 * 179.97438 * 17 15 14 36 36 H 0.96990 * 120.00200 * 0.02562 * 18 17 15 37 37 H 1.07993 * 120.07383 * 359.69567 * 22 21 19 38 38 H 1.08000 * 119.92908 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.85434 * 180.02562 * 24 23 22 40 40 H 1.07994 * 119.92892 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.06849 * 180.02562 * 26 25 24 42 42 H 1.07993 * 119.87865 * 179.70097 * 27 12 11 43 43 H 1.07991 * 120.13003 * 180.27417 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6963 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2871 9 6 1.3520 -2.4073 -0.3741 10 6 1.8258 -3.6499 0.0857 11 6 1.1798 -4.8069 -0.2858 12 6 0.0665 -4.7512 -1.1103 13 6 -0.6318 -6.0252 -1.5105 14 7 -1.6749 -6.3388 -0.5308 15 6 -2.4351 -7.4411 -0.6851 16 8 -2.2553 -8.1748 -1.6378 17 7 -3.3943 -7.7298 0.2164 18 7 -3.6010 -6.8845 1.3144 19 6 -4.5599 -7.1736 2.2163 20 8 -5.2457 -8.1674 2.0768 21 6 -4.7784 -6.2812 3.3747 22 6 -5.7703 -6.5780 4.3108 23 6 -5.9687 -5.7415 5.3897 24 6 -5.1867 -4.6107 5.5452 25 6 -4.2020 -4.3105 4.6206 26 6 -3.9934 -5.1387 3.5372 27 6 -0.4055 -3.5330 -1.5739 28 6 0.2211 -2.3628 -1.2103 29 1 -0.4850 0.8399 -0.0004 30 1 2.6931 -3.6955 0.7277 31 1 1.5413 -5.7617 0.0662 32 1 0.0909 -6.8403 -1.5452 33 1 -1.0838 -5.8981 -2.4942 34 1 -1.8185 -5.7531 0.2290 35 1 -3.9416 -8.5230 0.1051 36 1 -3.0540 -6.0913 1.4255 37 1 -6.3841 -7.4581 4.1883 38 1 -6.7361 -5.9697 6.1145 39 1 -5.3457 -3.9593 6.3919 40 1 -3.5953 -3.4262 4.7476 41 1 -3.2242 -4.9035 2.8164 42 1 -1.2707 -3.5017 -2.2196 43 1 -0.1509 -1.4146 -1.5691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478879007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:54 Heat of formation + Delta-G solvation = -1.022873 kcal Electronic energy + Delta-G solvation = -27481.538246 eV Core-core repulsion = 23491.893025 eV Total energy + Delta-G solvation = -3989.645221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86117 -40.81782 -39.51325 -39.22655 -36.96475 -36.38056 -35.05430 -33.30099 -32.03379 -31.90644 -31.16640 -30.94850 -28.49951 -25.51482 -25.12840 -23.51861 -22.88627 -22.49425 -22.13955 -21.71702 -20.44710 -19.21462 -19.12252 -18.19793 -17.21361 -17.00277 -16.90838 -16.67465 -16.14474 -16.13433 -16.05712 -15.61028 -15.51909 -15.41786 -15.08301 -14.79021 -14.36883 -14.18345 -13.83196 -13.77730 -13.60190 -13.43743 -12.82697 -12.72039 -12.66713 -12.60745 -12.47895 -12.09975 -12.05549 -11.90785 -11.48055 -11.34462 -11.26646 -11.01054 -10.30905 -10.05988 -9.97468 -9.46024 -9.37984 -9.27547 -8.65681 -6.35017 -0.24307 0.39500 0.60511 0.86976 1.16512 1.40792 1.48555 1.52108 1.56791 1.95262 2.03902 2.21290 2.75094 2.84897 3.19476 3.72896 3.83969 3.86116 3.97676 4.14196 4.25206 4.34252 4.43259 4.48892 4.54075 4.68975 4.77347 4.79169 5.04164 5.07686 5.14565 5.16242 5.26974 5.31926 5.38475 5.43755 5.45645 5.49988 5.51829 5.70544 5.91529 5.94574 6.10744 6.11847 6.22451 6.38217 6.49913 6.69965 6.93852 7.02163 7.04856 7.29304 8.30071 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.002995 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.744273 B = 9347.830773 C =11990.550808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.041 3.959 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.089 3.911 10 C -0.243 4.243 11 C -0.064 4.064 12 C -0.230 4.230 13 C 0.208 3.792 14 N -0.723 5.723 15 C 0.712 3.288 16 O -0.611 6.611 17 N -0.529 5.529 18 N -0.514 5.514 19 C 0.565 3.435 20 O -0.567 6.567 21 C -0.147 4.147 22 C -0.069 4.069 23 C -0.127 4.127 24 C -0.085 4.085 25 C -0.131 4.131 26 C -0.090 4.090 27 C -0.079 4.079 28 C -0.191 4.191 29 H 0.289 0.711 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.441 0.559 36 H 0.431 0.569 37 H 0.133 0.867 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 -4.187 11.031 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.262 4.262 11 C -0.083 4.083 12 C -0.232 4.232 13 C 0.086 3.914 14 N -0.379 5.379 15 C 0.412 3.588 16 O -0.489 6.489 17 N -0.285 5.285 18 N -0.267 5.267 19 C 0.354 3.646 20 O -0.445 6.445 21 C -0.152 4.152 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.103 4.103 25 C -0.149 4.149 26 C -0.109 4.109 27 C -0.098 4.098 28 C -0.211 4.211 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.236 0.764 35 H 0.287 0.713 36 H 0.276 0.724 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.122 0.878 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.964 -5.142 10.180 15.144 hybrid contribution 0.391 1.058 0.128 1.136 sum -9.572 -4.084 10.307 14.648 Atomic orbital electron populations 1.69830 1.08764 1.30725 1.34582 1.26661 0.95474 1.04202 0.91241 0.85338 0.78933 0.76070 0.79966 1.18891 1.19187 1.18377 1.19873 0.98418 0.92581 1.41601 0.90658 1.17977 0.91598 0.92996 0.88741 1.21150 1.04505 0.92975 1.07615 1.20682 0.94637 0.96945 0.96041 1.19132 1.01507 0.92964 1.09548 1.19751 0.87501 0.94007 0.90185 1.45516 1.37176 1.25045 1.30211 1.15812 0.79076 0.82386 0.81567 1.90981 1.72526 1.52947 1.32399 1.44441 1.39167 1.26489 1.18426 1.44842 1.38458 1.24975 1.18400 1.18738 0.78457 0.85519 0.81891 1.90775 1.47975 1.29113 1.76639 1.19547 1.02134 0.97311 0.96195 1.21391 0.95089 0.99505 0.92781 1.21488 1.00678 0.94513 0.97748 1.21840 0.93244 0.96401 0.98805 1.21487 0.98989 1.00268 0.94138 1.21542 0.97819 0.92921 0.98615 1.20754 0.98227 0.92287 0.98551 1.21252 1.00378 0.97048 1.02386 0.89990 0.88454 0.86614 0.91563 0.92071 0.76424 0.71337 0.72418 0.84890 0.82535 0.82574 0.83500 0.84618 0.87755 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.98 10.95 21.83 0.24 -38.74 16 2 C 0.04 1.90 5.14 85.26 0.44 2.33 16 3 Si 0.98 35.52 29.60 68.60 2.03 37.55 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.50 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.50 -24.83 9.05 23.46 0.21 -24.62 16 8 H 0.08 3.66 7.91 -2.91 -0.02 3.64 16 9 C 0.09 4.42 5.57 -21.29 -0.12 4.30 16 10 C -0.24 -10.72 9.80 22.73 0.22 -10.50 16 11 C -0.06 -2.45 9.67 22.22 0.21 -2.24 16 12 C -0.23 -8.43 5.27 -19.68 -0.10 -8.53 16 13 C 0.21 6.62 5.79 85.63 0.50 7.11 16 14 N -0.72 -20.45 5.51 -482.31 -2.66 -23.11 16 15 C 0.71 21.71 8.68 179.05 1.55 23.27 16 16 O -0.61 -22.97 17.18 -3.98 -0.07 -23.03 16 17 N -0.53 -13.85 6.26 -184.75 -1.16 -15.01 16 18 N -0.51 -11.44 6.21 -175.60 -1.09 -12.53 16 19 C 0.56 13.67 7.89 86.78 0.68 14.35 16 20 O -0.57 -17.04 16.19 -3.88 -0.06 -17.10 16 21 C -0.15 -2.94 5.87 -20.09 -0.12 -3.06 16 22 C -0.07 -1.21 9.60 22.53 0.22 -1.00 16 23 C -0.13 -1.59 10.03 22.23 0.22 -1.37 16 24 C -0.08 -0.99 10.04 22.33 0.22 -0.77 16 25 C -0.13 -1.88 10.03 22.23 0.22 -1.66 16 26 C -0.09 -1.53 9.54 22.53 0.21 -1.31 16 27 C -0.08 -3.24 9.67 22.22 0.21 -3.03 16 28 C -0.19 -9.13 8.70 22.73 0.20 -8.93 16 29 H 0.29 12.56 8.30 -92.72 -0.77 11.79 16 30 H 0.10 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 34 H 0.40 9.93 6.38 -92.71 -0.59 9.34 16 35 H 0.44 11.67 8.10 -213.31 -1.73 9.94 16 36 H 0.43 7.93 4.74 -213.33 -1.01 6.92 16 37 H 0.13 2.39 7.65 -2.91 -0.02 2.37 16 38 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.14 1.95 6.41 -2.91 -0.02 1.93 16 42 H 0.10 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.10 5.10 6.16 -2.92 -0.02 5.08 16 Total: -1.00 -63.02 373.70 -0.01 -63.03 By element: Atomic # 1 Polarization: 46.84 SS G_CDS: -2.24 Total: 44.60 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.00 Total: -15.65 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -4.67 Total: -89.39 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.13 Total: -40.13 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Total: -63.02 -0.01 -63.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478879007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.005 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds