Wall clock time and date at job start Tue Mar 31 2020 22:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00562 * 2 1 4 4 H 1.48508 * 109.47073 * 89.99608 * 3 2 1 5 5 H 1.48495 * 109.47424 * 209.99735 * 3 2 1 6 6 H 1.48503 * 109.46950 * 329.99947 * 3 2 1 7 7 C 1.38801 * 119.99701 * 180.27233 * 2 1 3 8 8 H 1.08000 * 119.99942 * 359.72475 * 7 2 1 9 9 S 1.76197 * 120.00351 * 179.72921 * 7 2 1 10 10 C 1.81001 * 100.00296 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00317 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99772 * 179.97438 * 11 10 9 14 14 C 1.47860 * 126.92633 * 359.69285 * 13 11 10 15 15 C 1.55995 * 105.12173 * 181.83632 * 14 13 11 16 16 H 1.09005 * 116.83169 * 159.41614 * 15 14 13 17 17 C 1.57083 * 99.47776 * 33.13495 * 15 14 13 18 18 C 1.49280 * 126.92638 * 179.97438 * 13 11 10 19 19 H 1.09004 * 116.12446 * 16.84204 * 18 13 11 20 20 C 1.56007 * 104.12847 * 246.87456 * 18 13 11 21 21 N 1.48288 * 105.06982 * 288.79663 * 20 18 13 22 22 C 1.46900 * 110.99891 * 122.54453 * 21 20 18 23 23 H 1.08995 * 109.40122 * 302.50703 * 22 21 20 24 24 C 1.53067 * 109.39862 * 62.25062 * 22 21 20 25 25 C 1.53335 * 108.42606 * 169.03014 * 24 22 21 26 26 C 1.52922 * 108.68599 * 292.48104 * 25 24 22 27 27 N 1.45752 * 110.48955 * 50.73747 * 26 25 24 28 28 C 1.33359 * 124.10394 * 340.92999 * 27 26 25 29 29 O 1.21279 * 118.24107 * 182.22378 * 28 27 26 30 30 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47244 * 299.99997 * 10 9 7 32 32 H 1.09007 * 109.46649 * 60.00029 * 10 9 7 33 33 H 1.08999 * 110.31227 * 300.86266 * 14 13 11 34 34 H 1.09003 * 110.31420 * 63.04589 * 14 13 11 35 35 H 1.09000 * 112.36060 * 191.56356 * 17 15 14 36 36 H 1.09002 * 112.36207 * 64.14883 * 17 15 14 37 37 H 1.08998 * 110.32919 * 47.69674 * 20 18 13 38 38 H 1.09006 * 110.32434 * 169.90390 * 20 18 13 39 39 H 1.08997 * 109.67506 * 288.76000 * 24 22 21 40 40 H 1.09005 * 109.67684 * 49.29613 * 24 22 21 41 41 H 1.09000 * 109.61075 * 172.71266 * 25 24 22 42 42 H 1.09005 * 109.71893 * 52.31104 * 25 24 22 43 43 H 1.08995 * 109.29657 * 290.42517 * 26 25 24 44 44 H 1.09004 * 109.29692 * 171.05138 * 26 25 24 45 45 H 0.97001 * 117.94975 * 160.94480 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 1.4002 5 1 3.5480 1.4400 -0.6999 6 1 1.4479 2.6526 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4702 -2.1374 -0.0057 9 16 3.7722 -1.2023 -0.0129 10 6 4.0864 -2.9848 -0.0177 11 6 5.5728 -3.2328 -0.0249 12 8 6.3438 -2.2966 -0.0262 13 7 6.0454 -4.4950 -0.0289 14 6 5.2499 -5.7414 -0.0206 15 6 6.3002 -6.8942 0.0180 16 1 5.9524 -7.8650 0.3713 17 6 7.4187 -6.1966 0.8723 18 6 7.4774 -4.9165 -0.0366 19 1 8.2038 -4.1538 0.2443 20 6 7.6680 -5.5923 -1.4297 21 7 6.9235 -6.8718 -1.3426 22 6 5.8993 -6.9574 -2.3922 23 1 5.2204 -6.1091 -2.3057 24 6 6.5749 -6.9277 -3.7654 25 6 5.5306 -7.2925 -4.8273 26 6 5.1335 -8.7575 -4.6411 27 7 4.7738 -9.0161 -3.2526 28 6 5.1254 -8.2343 -2.2310 29 8 4.8026 -8.5725 -1.1119 30 1 -0.4849 0.8401 -0.0004 31 1 3.6471 -3.4335 0.8732 32 1 3.6397 -3.4300 -0.9068 33 1 4.6128 -5.7778 0.8630 34 1 4.6470 -5.8115 -0.9260 35 1 8.3552 -6.7541 0.8639 36 1 7.0864 -5.9710 1.8857 37 1 7.2497 -4.9637 -2.2159 38 1 8.7250 -5.7814 -1.6174 39 1 6.9640 -5.9286 -3.9615 40 1 7.3902 -7.6508 -3.7891 41 1 5.9552 -7.1521 -5.8213 42 1 4.6517 -6.6579 -4.7121 43 1 5.9713 -9.3961 -4.9212 44 1 4.2816 -8.9841 -5.2823 45 1 4.2457 -9.8064 -3.0594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481664721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:41 Heat of formation + Delta-G solvation = -17.173724 kcal Electronic energy + Delta-G solvation = -28286.714410 eV Core-core repulsion = 24431.812787 eV Total energy + Delta-G solvation = -3854.901623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81365 -40.04913 -38.19412 -36.84095 -34.61897 -32.58618 -32.44408 -31.03825 -29.99283 -29.05755 -27.90006 -25.63403 -25.26790 -24.22903 -23.01169 -21.47387 -20.75798 -19.67602 -18.67461 -17.81385 -17.59602 -17.06169 -16.94909 -16.38097 -15.79190 -15.42552 -15.03978 -14.96645 -14.65776 -14.48585 -14.23384 -13.84432 -13.77651 -13.44845 -13.12806 -12.91116 -12.81624 -12.75726 -12.37522 -12.11141 -12.00955 -11.85525 -11.72651 -11.65418 -11.35384 -11.27786 -11.25226 -11.01843 -11.01172 -10.60409 -9.86835 -9.82238 -9.57946 -9.41315 -9.01448 -8.81414 -8.51453 -8.40985 -6.93500 -6.29809 -4.01799 2.29264 2.63340 2.87348 2.91409 3.14545 3.32278 3.49300 3.55087 3.57485 4.04674 4.21574 4.26567 4.31803 4.33645 4.43072 4.46315 4.63567 4.66788 4.78502 4.84100 4.93725 5.08127 5.09191 5.13093 5.19183 5.28852 5.31522 5.40510 5.46617 5.54276 5.57017 5.65458 5.69655 5.73281 5.77352 5.80453 5.94630 6.00840 6.20202 6.39014 6.46744 6.61114 6.97900 7.58798 7.92234 7.93308 8.40757 8.41376 9.16228 10.79491 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.003191 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.844548 B = 8773.459242 C = 9650.728121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.087 0.913 9 S -0.141 6.141 10 C -0.117 4.117 11 C 0.550 3.450 12 O -0.518 6.518 13 N -0.629 5.629 14 C 0.069 3.931 15 C 0.067 3.933 16 H 0.153 0.847 17 C -0.140 4.140 18 C 0.112 3.888 19 H 0.128 0.872 20 C 0.027 3.973 21 N -0.500 5.500 22 C 0.052 3.948 23 H 0.086 0.914 24 C -0.116 4.116 25 C -0.139 4.139 26 C 0.110 3.890 27 N -0.718 5.718 28 C 0.532 3.468 29 O -0.544 6.544 30 H 0.271 0.729 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.122 -20.987 -9.046 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.105 0.895 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.338 3.662 12 O -0.393 6.393 13 N -0.367 5.367 14 C -0.055 4.055 15 C -0.040 4.040 16 H 0.171 0.829 17 C -0.179 4.179 18 C 0.008 3.992 19 H 0.146 0.854 20 C -0.101 4.101 21 N -0.225 5.225 22 C -0.059 4.059 23 H 0.103 0.897 24 C -0.154 4.154 25 C -0.177 4.177 26 C -0.015 4.015 27 N -0.371 5.371 28 C 0.319 3.681 29 O -0.421 6.421 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 16.342 -19.794 -8.623 27.078 hybrid contribution -1.818 0.061 -0.029 1.819 sum 14.524 -19.733 -8.652 25.985 Atomic orbital electron populations 1.69942 1.05916 1.27763 1.48050 1.24707 0.94445 0.98939 0.93152 0.86735 0.81881 0.83260 0.79972 1.19175 1.15927 1.19903 1.22310 0.88228 0.97541 1.58826 0.89454 1.84750 1.09344 0.99939 1.97414 1.23250 0.93837 1.04187 1.05505 1.19977 0.90457 0.80645 0.75076 1.90698 1.58843 1.41073 1.48656 1.49352 1.07113 1.04978 1.75212 1.23144 0.95428 0.84252 1.02675 1.24935 0.92370 0.98419 0.88324 0.82927 1.24058 0.99785 0.95461 0.98581 1.23986 0.84435 0.95753 0.94986 0.85426 1.23740 0.99801 0.89211 0.97372 1.64991 1.22243 1.33515 1.01764 1.21859 0.94553 0.95605 0.93927 0.89656 1.21739 0.98483 1.03535 0.91629 1.21900 1.00016 0.95496 1.00283 1.21401 1.00944 0.97126 0.81982 1.45420 1.56212 1.28246 1.07230 1.19822 0.79072 0.85026 0.84218 1.90689 1.55090 1.72883 1.23447 0.91929 0.88650 0.88969 0.90569 0.90995 0.88837 0.89572 0.91496 0.88953 0.90402 0.89978 0.89218 0.90677 0.91471 0.90402 0.76377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 21.96 27.74 -169.99 -4.72 17.25 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.24 -6.01 6.73 56.52 0.38 -5.63 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.27 10.04 30.94 0.31 -14.96 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 9 S -0.14 -3.65 18.54 -107.50 -1.99 -5.64 16 10 C -0.12 -2.42 5.44 36.00 0.20 -2.22 16 11 C 0.55 10.42 7.91 -10.98 -0.09 10.34 16 12 O -0.52 -11.50 16.21 5.56 0.09 -11.41 16 13 N -0.63 -9.12 2.95 -156.80 -0.46 -9.58 16 14 C 0.07 0.88 5.47 -1.69 -0.01 0.87 16 15 C 0.07 0.73 3.93 -62.34 -0.24 0.48 16 16 H 0.15 1.79 6.26 -51.93 -0.33 1.46 16 17 C -0.14 -1.37 6.80 -22.29 -0.15 -1.52 16 18 C 0.11 1.30 5.23 -62.55 -0.33 0.97 16 19 H 0.13 1.52 8.06 -51.93 -0.42 1.10 16 20 C 0.03 0.27 5.66 -1.45 -0.01 0.26 16 21 N -0.50 -5.02 5.10 -210.55 -1.07 -6.09 16 22 C 0.05 0.50 1.38 -69.08 -0.10 0.41 16 23 H 0.09 0.96 5.59 -51.93 -0.29 0.67 16 24 C -0.12 -0.81 5.01 -26.52 -0.13 -0.95 16 25 C -0.14 -0.73 6.02 -26.60 -0.16 -0.89 16 26 C 0.11 0.51 7.17 -4.49 -0.03 0.48 16 27 N -0.72 -5.27 5.45 -61.39 -0.33 -5.61 16 28 C 0.53 5.52 7.42 -11.87 -0.09 5.43 16 29 O -0.54 -7.18 14.10 5.56 0.08 -7.10 16 30 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 32 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.95 5.24 -51.93 -0.27 0.68 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.55 7.01 -51.93 -0.36 0.19 16 40 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.40 2.57 8.80 -40.82 -0.36 2.21 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -35.40 361.39 -9.71 -45.11 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.60 Total: 2.20 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.93 Total: 1.43 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -1.10 Total: -47.29 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.40 -9.71 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481664721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.941 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds