Wall clock time and date at job start Tue Mar 31 2020 22:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00562 * 2 1 4 4 H 1.48508 * 109.47073 * 89.99608 * 3 2 1 5 5 H 1.48495 * 109.47424 * 209.99735 * 3 2 1 6 6 H 1.48503 * 109.46950 * 329.99947 * 3 2 1 7 7 C 1.38801 * 119.99701 * 180.27233 * 2 1 3 8 8 H 1.08000 * 119.99942 * 359.72475 * 7 2 1 9 9 S 1.76197 * 120.00351 * 179.72921 * 7 2 1 10 10 C 1.81001 * 100.00296 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00317 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99772 * 179.97438 * 11 10 9 14 14 C 1.47860 * 126.92633 * 359.69285 * 13 11 10 15 15 C 1.55995 * 105.12173 * 181.83632 * 14 13 11 16 16 H 1.09005 * 116.83169 * 159.41614 * 15 14 13 17 17 C 1.57083 * 99.47776 * 33.13495 * 15 14 13 18 18 C 1.49280 * 126.92638 * 179.97438 * 13 11 10 19 19 H 1.09004 * 116.12446 * 16.84204 * 18 13 11 20 20 C 1.56007 * 104.12847 * 246.87456 * 18 13 11 21 21 N 1.48288 * 105.06982 * 288.79663 * 20 18 13 22 22 C 1.46900 * 110.99891 * 122.54453 * 21 20 18 23 23 H 1.08995 * 109.40122 * 302.50703 * 22 21 20 24 24 C 1.53067 * 109.39862 * 62.25062 * 22 21 20 25 25 C 1.53335 * 108.42606 * 169.03014 * 24 22 21 26 26 C 1.52922 * 108.68599 * 292.48104 * 25 24 22 27 27 N 1.45752 * 110.48955 * 50.73747 * 26 25 24 28 28 C 1.33359 * 124.10394 * 340.92999 * 27 26 25 29 29 O 1.21279 * 118.24107 * 182.22378 * 28 27 26 30 30 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47244 * 299.99997 * 10 9 7 32 32 H 1.09007 * 109.46649 * 60.00029 * 10 9 7 33 33 H 1.08999 * 110.31227 * 300.86266 * 14 13 11 34 34 H 1.09003 * 110.31420 * 63.04589 * 14 13 11 35 35 H 1.09000 * 112.36060 * 191.56356 * 17 15 14 36 36 H 1.09002 * 112.36207 * 64.14883 * 17 15 14 37 37 H 1.08998 * 110.32919 * 47.69674 * 20 18 13 38 38 H 1.09006 * 110.32434 * 169.90390 * 20 18 13 39 39 H 1.08997 * 109.67506 * 288.76000 * 24 22 21 40 40 H 1.09005 * 109.67684 * 49.29613 * 24 22 21 41 41 H 1.09000 * 109.61075 * 172.71266 * 25 24 22 42 42 H 1.09005 * 109.71893 * 52.31104 * 25 24 22 43 43 H 1.08995 * 109.29657 * 290.42517 * 26 25 24 44 44 H 1.09004 * 109.29692 * 171.05138 * 26 25 24 45 45 H 0.97001 * 117.94975 * 160.94480 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 1.4002 5 1 3.5480 1.4400 -0.6999 6 1 1.4479 2.6526 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4702 -2.1374 -0.0057 9 16 3.7722 -1.2023 -0.0129 10 6 4.0864 -2.9848 -0.0177 11 6 5.5728 -3.2328 -0.0249 12 8 6.3438 -2.2966 -0.0262 13 7 6.0454 -4.4950 -0.0289 14 6 5.2499 -5.7414 -0.0206 15 6 6.3002 -6.8942 0.0180 16 1 5.9524 -7.8650 0.3713 17 6 7.4187 -6.1966 0.8723 18 6 7.4774 -4.9165 -0.0366 19 1 8.2038 -4.1538 0.2443 20 6 7.6680 -5.5923 -1.4297 21 7 6.9235 -6.8718 -1.3426 22 6 5.8993 -6.9574 -2.3922 23 1 5.2204 -6.1091 -2.3057 24 6 6.5749 -6.9277 -3.7654 25 6 5.5306 -7.2925 -4.8273 26 6 5.1335 -8.7575 -4.6411 27 7 4.7738 -9.0161 -3.2526 28 6 5.1254 -8.2343 -2.2310 29 8 4.8026 -8.5725 -1.1119 30 1 -0.4849 0.8401 -0.0004 31 1 3.6471 -3.4335 0.8732 32 1 3.6397 -3.4300 -0.9068 33 1 4.6128 -5.7778 0.8630 34 1 4.6470 -5.8115 -0.9260 35 1 8.3552 -6.7541 0.8639 36 1 7.0864 -5.9710 1.8857 37 1 7.2497 -4.9637 -2.2159 38 1 8.7250 -5.7814 -1.6174 39 1 6.9640 -5.9286 -3.9615 40 1 7.3902 -7.6508 -3.7891 41 1 5.9552 -7.1521 -5.8213 42 1 4.6517 -6.6579 -4.7121 43 1 5.9713 -9.3961 -4.9212 44 1 4.2816 -8.9841 -5.2823 45 1 4.2457 -9.8064 -3.0594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481664721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:40 Heat of formation + Delta-G solvation = -44.345469 kcal Electronic energy + Delta-G solvation = -28287.892666 eV Core-core repulsion = 24431.812787 eV Total energy + Delta-G solvation = -3856.079878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72570 -40.95017 -39.56032 -37.51588 -35.54862 -34.72733 -33.57667 -31.88989 -30.92611 -30.43849 -28.68663 -27.90913 -26.23119 -25.00128 -23.61144 -22.55154 -21.68080 -20.53458 -20.02826 -19.36472 -18.42857 -18.29542 -17.89277 -17.36113 -17.15932 -16.85475 -16.48723 -15.97058 -15.85103 -15.69859 -15.15999 -15.05376 -14.88878 -14.57693 -14.38622 -14.15897 -13.84359 -13.71746 -13.52094 -13.39322 -13.13388 -13.05803 -12.95533 -12.75697 -12.60864 -12.48000 -12.38186 -12.04420 -11.92846 -11.89691 -11.72663 -11.21734 -11.14092 -10.63563 -10.60595 -10.02576 -9.90696 -9.41125 -9.07607 -8.56237 -6.28964 0.88053 1.28681 1.39450 1.39819 1.48578 1.51631 1.88709 2.21277 2.24062 2.59785 2.77299 2.81773 3.22340 3.36531 3.48118 3.60161 3.67826 3.75477 3.83206 3.92744 4.00319 4.05001 4.08067 4.26028 4.31285 4.35667 4.50815 4.52250 4.66733 4.72309 4.77689 4.80798 4.89684 4.94800 4.98551 5.04040 5.07357 5.15565 5.26995 5.57360 5.65394 5.75480 5.88325 6.05382 6.25100 6.31678 6.87912 6.93786 7.20610 8.56559 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.003191 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.844548 B = 8773.459242 C = 9650.728121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.048 3.952 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.236 1.236 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.057 0.943 9 S -0.162 6.162 10 C -0.105 4.105 11 C 0.553 3.447 12 O -0.555 6.555 13 N -0.617 5.617 14 C 0.065 3.935 15 C 0.074 3.926 16 H 0.149 0.851 17 C -0.126 4.126 18 C 0.102 3.898 19 H 0.128 0.872 20 C 0.035 3.965 21 N -0.494 5.494 22 C 0.051 3.949 23 H 0.065 0.935 24 C -0.111 4.111 25 C -0.137 4.137 26 C 0.106 3.894 27 N -0.711 5.711 28 C 0.525 3.475 29 O -0.581 6.581 30 H 0.278 0.722 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.242 -22.146 -10.273 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.158 4.158 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.160 1.160 6 H -0.179 1.179 7 C -0.682 4.682 8 H 0.075 0.925 9 S 0.065 5.935 10 C -0.256 4.256 11 C 0.341 3.659 12 O -0.434 6.434 13 N -0.353 5.353 14 C -0.059 4.059 15 C -0.034 4.034 16 H 0.166 0.834 17 C -0.164 4.164 18 C -0.001 4.001 19 H 0.146 0.854 20 C -0.093 4.093 21 N -0.219 5.219 22 C -0.061 4.061 23 H 0.082 0.918 24 C -0.149 4.149 25 C -0.175 4.175 26 C -0.017 4.017 27 N -0.362 5.362 28 C 0.311 3.689 29 O -0.461 6.461 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 18.465 -21.019 -9.892 29.675 hybrid contribution -2.501 0.209 0.304 2.528 sum 15.964 -20.811 -9.589 27.926 Atomic orbital electron populations 1.70019 1.07363 1.29183 1.48783 1.25582 0.95303 1.02310 0.92603 0.85850 0.80688 0.79341 0.80375 1.18557 1.15959 1.17926 1.22434 0.90230 0.96659 1.58885 0.92491 1.84577 1.06451 1.04953 1.97539 1.23197 0.95984 1.00177 1.06214 1.19529 0.89165 0.81787 0.75438 1.90678 1.59152 1.42491 1.51039 1.49279 1.09143 1.03987 1.72900 1.23295 0.96040 0.84211 1.02317 1.24846 0.91913 0.97292 0.89327 0.83357 1.24039 1.00395 0.94093 0.97847 1.24322 0.82267 0.96475 0.97010 0.85440 1.23751 1.01183 0.88674 0.95699 1.65064 1.22144 1.33274 1.01405 1.21897 0.94323 0.94564 0.95290 0.91756 1.21736 0.98934 1.03808 0.90385 1.21930 0.99067 0.95638 1.00906 1.21655 1.02598 0.97012 0.80476 1.45470 1.55142 1.27666 1.07910 1.19987 0.79093 0.85440 0.84334 1.90669 1.56682 1.73829 1.24932 0.91206 0.88048 0.88208 0.90921 0.91496 0.86337 0.89669 0.92529 0.86255 0.90483 0.89164 0.86849 0.92079 0.89524 0.88360 0.75843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.53 13.97 21.65 0.30 -56.23 16 2 C 0.05 2.85 5.50 84.86 0.47 3.31 16 3 Si 0.92 45.41 27.74 68.60 1.90 47.31 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.24 -11.64 6.73 99.48 0.67 -10.97 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -32.11 10.04 67.95 0.68 -31.42 16 8 H 0.06 3.65 8.03 -2.91 -0.02 3.62 16 9 S -0.16 -8.48 18.54 -56.49 -1.05 -9.53 16 10 C -0.10 -4.39 5.44 71.24 0.39 -4.01 16 11 C 0.55 21.03 7.91 87.66 0.69 21.72 16 12 O -0.56 -24.73 16.21 -3.03 -0.05 -24.78 16 13 N -0.62 -17.66 2.95 -768.40 -2.26 -19.92 16 14 C 0.06 1.64 5.47 87.16 0.48 2.12 16 15 C 0.07 1.52 3.93 46.84 0.18 1.71 16 16 H 0.15 3.36 6.26 -2.38 -0.01 3.35 16 17 C -0.13 -2.19 6.80 33.47 0.23 -1.96 16 18 C 0.10 2.20 5.23 46.94 0.25 2.45 16 19 H 0.13 2.84 8.06 -2.38 -0.02 2.82 16 20 C 0.04 0.62 5.66 87.08 0.49 1.12 16 21 N -0.49 -9.09 5.10 -820.06 -4.18 -13.28 16 22 C 0.05 0.93 1.38 44.03 0.06 0.99 16 23 H 0.07 1.46 5.59 -2.39 -0.01 1.45 16 24 C -0.11 -1.33 5.01 30.73 0.15 -1.18 16 25 C -0.14 -1.14 6.02 30.68 0.18 -0.96 16 26 C 0.11 0.69 7.17 86.49 0.62 1.31 16 27 N -0.71 -9.31 5.45 -467.31 -2.55 -11.85 16 28 C 0.53 10.46 7.42 87.71 0.65 11.11 16 29 O -0.58 -15.24 14.10 -3.03 -0.04 -15.28 16 30 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.10 4.10 8.14 -2.40 -0.02 4.08 16 32 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.80 5.24 -2.39 -0.01 1.79 16 35 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.15 6.57 -2.39 -0.02 1.14 16 38 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.08 0.95 7.01 -2.39 -0.02 0.94 16 40 H 0.09 0.97 8.13 -2.38 -0.02 0.95 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 43 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.41 4.64 8.80 -92.71 -0.82 3.83 16 Total: -1.00 -77.80 361.39 -2.23 -80.03 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.17 Total: 17.21 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.53 Total: 6.31 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -8.69 Total: -101.27 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.09 Total: -40.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.53 kcal Total: -77.80 -2.23 -80.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481664721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.685 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds