Wall clock time and date at job start Tue Mar 31 2020 22:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99650 * 2 1 4 4 H 1.48502 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47483 * 299.99967 * 3 2 1 6 6 H 1.48504 * 109.47060 * 59.99928 * 3 2 1 7 7 C 1.38949 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00475 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99460 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99593 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00175 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00181 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47461 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00405 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47534 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47108 * 305.00375 * 15 14 13 17 17 O 1.42903 * 109.47176 * 65.00160 * 15 14 13 18 18 C 1.52993 * 109.47473 * 185.00487 * 15 14 13 19 19 N 1.46496 * 109.47551 * 180.02562 * 18 15 14 20 20 C 1.34777 * 120.00258 * 180.02562 * 19 18 15 21 21 O 1.21543 * 120.00110 * 359.97438 * 20 19 18 22 22 C 1.47856 * 119.99811 * 179.97438 * 20 19 18 23 23 C 1.39596 * 120.13453 * 359.72418 * 22 20 19 24 24 C 1.37942 * 119.90466 * 179.76668 * 23 22 20 25 25 C 1.38341 * 120.17195 * 0.48601 * 24 23 22 26 26 C 1.38555 * 120.27099 * 359.78463 * 25 24 23 27 27 F 1.35102 * 119.95253 * 179.97438 * 26 25 24 28 28 C 1.38207 * 120.08863 * 359.95920 * 26 25 24 29 29 H 0.96994 * 120.00345 * 0.02562 * 1 2 3 30 30 H 0.96989 * 120.00508 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46838 * 60.00013 * 12 10 9 32 32 H 1.09003 * 109.47054 * 300.00228 * 12 10 9 33 33 H 1.00909 * 110.99661 * 56.04687 * 13 12 10 34 34 H 1.09009 * 109.46711 * 60.00067 * 14 13 12 35 35 H 1.09001 * 109.47378 * 300.00504 * 14 13 12 36 36 H 0.96700 * 113.99509 * 60.00104 * 17 15 14 37 37 H 1.09000 * 109.47250 * 60.00015 * 18 15 14 38 38 H 1.09004 * 109.46862 * 300.00038 * 18 15 14 39 39 H 0.96999 * 119.99694 * 359.97438 * 19 18 15 40 40 H 1.08002 * 120.04374 * 359.97438 * 23 22 20 41 41 H 1.07998 * 119.91256 * 180.22950 * 24 23 22 42 42 H 1.08004 * 119.86817 * 179.76308 * 25 24 23 43 43 H 1.07998 * 120.08600 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0010 13 7 2.1986 -5.9795 -0.0017 14 6 1.4984 -7.2708 -0.0006 15 6 2.5233 -8.4068 -0.0007 16 1 3.2038 -8.2821 -0.8431 17 8 3.2660 -8.3784 1.2198 18 6 1.7980 -9.7481 -0.1254 19 7 2.7793 -10.8358 -0.1249 20 6 2.3674 -12.1151 -0.2262 21 8 1.1818 -12.3664 -0.3175 22 6 3.3580 -13.2128 -0.2263 23 6 4.7208 -12.9271 -0.1274 24 6 5.6405 -13.9551 -0.1231 25 6 5.2164 -15.2678 -0.2267 26 6 3.8659 -15.5594 -0.3308 27 9 3.4590 -16.8437 -0.4321 28 6 2.9346 -14.5383 -0.3309 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6163 -4.9205 -0.8903 32 1 0.6183 -4.9209 0.8897 33 1 2.8341 -5.9123 0.7792 34 1 0.8725 -7.3455 -0.8899 35 1 0.8744 -7.3451 0.8901 36 1 2.7231 -8.4840 2.0130 37 1 1.2316 -9.7698 -1.0564 38 1 1.1175 -9.8728 0.7170 39 1 3.7256 -10.6353 -0.0525 40 1 5.0543 -11.9027 -0.0510 41 1 6.6946 -13.7344 -0.0429 42 1 5.9410 -16.0687 -0.2266 43 1 1.8819 -14.7656 -0.4117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482703462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:31 Heat of formation + Delta-G solvation = -141.192593 kcal Electronic energy + Delta-G solvation = -27163.979063 eV Core-core repulsion = 22737.486402 eV Total energy + Delta-G solvation = -4426.492661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.40079 -40.67676 -38.97449 -38.40818 -37.86314 -35.07446 -34.64544 -33.80728 -32.04788 -31.31412 -31.21472 -30.14752 -27.36260 -25.33702 -24.24874 -23.28873 -22.97936 -22.00545 -20.92626 -19.31491 -18.93478 -17.92304 -17.38416 -16.90341 -16.78127 -16.70552 -16.43479 -16.13179 -15.79059 -15.59982 -15.48609 -14.97157 -14.59060 -14.49996 -14.44112 -14.05734 -13.82262 -13.67855 -13.48832 -13.13053 -13.00009 -12.69945 -12.57309 -12.41899 -11.90555 -11.87278 -11.60628 -11.53503 -11.21622 -11.06236 -10.60729 -10.35482 -10.29605 -10.22487 -9.77085 -9.53652 -9.51513 -9.34392 -8.50116 -8.13003 -7.97918 -6.43403 -3.84307 0.14086 0.57454 2.29296 2.57325 3.15337 3.19019 3.26098 3.33371 3.66490 3.87322 3.91235 4.05708 4.14756 4.15747 4.21294 4.40637 4.46833 4.67656 4.70746 4.73433 4.86219 5.06945 5.08946 5.20560 5.26135 5.32134 5.38139 5.46671 5.52961 5.58616 5.64246 5.70737 5.83875 5.91616 5.93410 6.20062 6.22932 7.02178 7.10050 7.31535 7.54000 7.62004 7.73217 8.04796 8.59343 9.16318 9.52358 10.03656 10.74372 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.040664 B = 0.001413 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.399928 B =19814.079940 C =20364.978736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.031 3.969 15 C 0.097 3.903 16 H 0.118 0.882 17 O -0.555 6.555 18 C 0.088 3.912 19 N -0.715 5.715 20 C 0.558 3.442 21 O -0.534 6.534 22 C -0.105 4.105 23 C -0.095 4.095 24 C -0.096 4.096 25 C -0.129 4.129 26 C 0.092 3.908 27 F -0.135 7.135 28 C -0.097 4.097 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.356 0.644 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.374 0.626 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.407 0.593 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 -29.191 1.077 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.297 5.297 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.136 0.864 17 O -0.360 6.360 18 C -0.037 4.037 19 N -0.367 5.367 20 C 0.344 3.656 21 O -0.411 6.411 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.148 4.148 26 C 0.073 3.927 27 F -0.114 7.114 28 C -0.116 4.116 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.177 0.823 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.222 0.778 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.243 0.757 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.200 -29.118 -0.080 29.771 hybrid contribution -0.815 0.625 1.223 1.597 sum 5.385 -28.493 1.143 29.020 Atomic orbital electron populations 1.69619 1.05950 1.28080 1.50658 1.25267 0.95635 0.99742 0.97297 0.85795 0.79723 0.81092 0.77702 1.19196 1.20733 1.20776 1.19766 0.93427 0.82213 1.47501 0.87830 1.41868 1.09199 1.04611 1.64358 1.19785 0.88394 0.84700 0.84573 1.90534 1.13721 1.87035 1.55319 1.21686 0.94330 0.91018 1.01211 1.60006 1.18514 0.99248 1.51971 1.22535 0.95535 0.90318 1.01596 1.22254 0.94331 0.90894 0.88762 0.86428 1.86645 1.38047 1.95771 1.15494 1.22116 0.91718 0.86137 1.03690 1.45747 1.11335 1.05275 1.74376 1.18137 0.88063 0.82645 0.76732 1.90805 1.17101 1.83886 1.49318 1.19747 0.93599 0.93197 1.04239 1.21456 0.91744 1.00352 0.97880 1.21019 1.00542 0.91294 0.98516 1.21417 0.94155 0.98543 1.00734 1.17562 0.92880 0.78800 1.03488 1.91538 1.91199 1.35080 1.93554 1.21245 1.00983 0.90815 0.98578 0.91913 0.77468 0.89574 0.93875 0.82331 0.89837 0.94891 0.77836 0.89899 0.90774 0.75671 0.84555 0.84018 0.84120 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 11 O -0.58 -15.74 15.78 5.54 0.09 -15.65 16 12 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 13 N -0.66 -10.07 6.13 -115.06 -0.70 -10.77 16 14 C 0.03 0.32 5.36 -3.83 -0.02 0.30 16 15 C 0.10 0.83 3.29 -26.74 -0.09 0.74 16 16 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 17 O -0.55 -4.87 12.60 -35.23 -0.44 -5.31 16 18 C 0.09 0.68 5.34 -4.05 -0.02 0.66 16 19 N -0.71 -5.39 5.40 -61.25 -0.33 -5.72 16 20 C 0.56 5.40 7.77 -12.32 -0.10 5.31 16 21 O -0.53 -7.08 16.35 5.33 0.09 -7.00 16 22 C -0.10 -0.83 5.87 -104.97 -0.62 -1.44 16 23 C -0.10 -0.52 9.54 -39.18 -0.37 -0.89 16 24 C -0.10 -0.43 10.03 -39.65 -0.40 -0.83 16 25 C -0.13 -0.70 10.02 -39.43 -0.39 -1.09 16 26 C 0.09 0.69 7.29 -39.48 -0.29 0.40 16 27 F -0.14 -1.15 17.26 2.25 0.04 -1.11 16 28 C -0.10 -0.80 9.57 -39.11 -0.37 -1.18 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.36 5.78 7.99 -39.29 -0.31 5.46 16 34 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.37 2.23 9.05 45.56 0.41 2.64 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.41 2.35 6.38 -40.82 -0.26 2.09 16 40 H 0.14 0.46 6.40 -52.49 -0.34 0.12 16 41 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.15 1.30 7.65 -52.49 -0.40 0.90 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -34.68 379.92 -7.46 -42.15 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -4.54 Total: 14.66 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.03 Total: 5.01 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.37 Total: -54.38 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.27 Total: -27.96 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.68 -7.46 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482703462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.044 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds