Wall clock time and date at job start Tue Mar 31 2020 22:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99650 * 2 1 4 4 H 1.48502 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47483 * 299.99967 * 3 2 1 6 6 H 1.48504 * 109.47060 * 59.99928 * 3 2 1 7 7 C 1.38949 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00475 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99460 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99593 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00175 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00181 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47461 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00405 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47534 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47108 * 305.00375 * 15 14 13 17 17 O 1.42903 * 109.47176 * 65.00160 * 15 14 13 18 18 C 1.52993 * 109.47473 * 185.00487 * 15 14 13 19 19 N 1.46496 * 109.47551 * 180.02562 * 18 15 14 20 20 C 1.34777 * 120.00258 * 180.02562 * 19 18 15 21 21 O 1.21543 * 120.00110 * 359.97438 * 20 19 18 22 22 C 1.47856 * 119.99811 * 179.97438 * 20 19 18 23 23 C 1.39596 * 120.13453 * 359.72418 * 22 20 19 24 24 C 1.37942 * 119.90466 * 179.76668 * 23 22 20 25 25 C 1.38341 * 120.17195 * 0.48601 * 24 23 22 26 26 C 1.38555 * 120.27099 * 359.78463 * 25 24 23 27 27 F 1.35102 * 119.95253 * 179.97438 * 26 25 24 28 28 C 1.38207 * 120.08863 * 359.95920 * 26 25 24 29 29 H 0.96994 * 120.00345 * 0.02562 * 1 2 3 30 30 H 0.96989 * 120.00508 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46838 * 60.00013 * 12 10 9 32 32 H 1.09003 * 109.47054 * 300.00228 * 12 10 9 33 33 H 1.00909 * 110.99661 * 56.04687 * 13 12 10 34 34 H 1.09009 * 109.46711 * 60.00067 * 14 13 12 35 35 H 1.09001 * 109.47378 * 300.00504 * 14 13 12 36 36 H 0.96700 * 113.99509 * 60.00104 * 17 15 14 37 37 H 1.09000 * 109.47250 * 60.00015 * 18 15 14 38 38 H 1.09004 * 109.46862 * 300.00038 * 18 15 14 39 39 H 0.96999 * 119.99694 * 359.97438 * 19 18 15 40 40 H 1.08002 * 120.04374 * 359.97438 * 23 22 20 41 41 H 1.07998 * 119.91256 * 180.22950 * 24 23 22 42 42 H 1.08004 * 119.86817 * 179.76308 * 25 24 23 43 43 H 1.07998 * 120.08600 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0010 13 7 2.1986 -5.9795 -0.0017 14 6 1.4984 -7.2708 -0.0006 15 6 2.5233 -8.4068 -0.0007 16 1 3.2038 -8.2821 -0.8431 17 8 3.2660 -8.3784 1.2198 18 6 1.7980 -9.7481 -0.1254 19 7 2.7793 -10.8358 -0.1249 20 6 2.3674 -12.1151 -0.2262 21 8 1.1818 -12.3664 -0.3175 22 6 3.3580 -13.2128 -0.2263 23 6 4.7208 -12.9271 -0.1274 24 6 5.6405 -13.9551 -0.1231 25 6 5.2164 -15.2678 -0.2267 26 6 3.8659 -15.5594 -0.3308 27 9 3.4590 -16.8437 -0.4321 28 6 2.9346 -14.5383 -0.3309 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6163 -4.9205 -0.8903 32 1 0.6183 -4.9209 0.8897 33 1 2.8341 -5.9123 0.7792 34 1 0.8725 -7.3455 -0.8899 35 1 0.8744 -7.3451 0.8901 36 1 2.7231 -8.4840 2.0130 37 1 1.2316 -9.7698 -1.0564 38 1 1.1175 -9.8728 0.7170 39 1 3.7256 -10.6353 -0.0525 40 1 5.0543 -11.9027 -0.0510 41 1 6.6946 -13.7344 -0.0429 42 1 5.9410 -16.0687 -0.2266 43 1 1.8819 -14.7656 -0.4117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482703462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:30 Heat of formation + Delta-G solvation = -170.540999 kcal Electronic energy + Delta-G solvation = -27165.251705 eV Core-core repulsion = 22737.486402 eV Total energy + Delta-G solvation = -4427.765303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98803 -41.33989 -40.19648 -39.46029 -38.78024 -36.32649 -35.70704 -35.36838 -33.26333 -32.59715 -31.81887 -30.96574 -28.61170 -26.71561 -25.33504 -24.11626 -23.62201 -22.74470 -21.60496 -21.08049 -19.91822 -19.54245 -18.30308 -17.63419 -17.48478 -17.36595 -17.24841 -17.01801 -16.73927 -16.59745 -16.38818 -16.25280 -15.97912 -15.77423 -15.34236 -15.01203 -14.85852 -14.63497 -14.37800 -14.24684 -14.02937 -13.66668 -13.45261 -13.22076 -13.14516 -12.98879 -12.92994 -12.68968 -12.42139 -12.40199 -12.10845 -11.95590 -11.51024 -11.35756 -11.03799 -10.37571 -10.32932 -10.10187 -10.01090 -9.85048 -9.32599 -8.46573 -5.95335 -0.38075 0.08946 1.37253 1.42788 1.56905 1.67223 1.91076 2.05707 2.29937 2.64535 2.89021 3.16988 3.20908 3.43249 3.48873 3.56553 3.71997 3.86842 3.96864 3.99255 4.03156 4.14773 4.25091 4.32363 4.44475 4.51766 4.56725 4.61053 4.72459 4.77327 4.93300 5.00211 5.09631 5.12584 5.21389 5.26469 5.41636 5.73943 5.87291 6.09326 6.38812 6.41952 6.60438 6.78092 7.05792 7.13123 7.56717 8.12064 8.70971 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.040664 B = 0.001413 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.399928 B =19814.079940 C =20364.978736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.679 5.679 14 C 0.031 3.969 15 C 0.113 3.887 16 H 0.110 0.890 17 O -0.565 6.565 18 C 0.094 3.906 19 N -0.702 5.702 20 C 0.556 3.444 21 O -0.579 6.579 22 C -0.121 4.121 23 C -0.087 4.087 24 C -0.088 4.088 25 C -0.121 4.121 26 C 0.073 3.927 27 F -0.146 7.146 28 C -0.114 4.114 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.349 0.651 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.387 0.613 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.417 0.583 40 H 0.160 0.840 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -29.351 1.374 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.099 4.099 15 C 0.054 3.946 16 H 0.128 0.872 17 O -0.372 6.372 18 C -0.030 4.030 19 N -0.354 5.354 20 C 0.344 3.656 21 O -0.460 6.460 22 C -0.124 4.124 23 C -0.106 4.106 24 C -0.105 4.105 25 C -0.140 4.140 26 C 0.054 3.946 27 F -0.125 7.125 28 C -0.134 4.134 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.168 0.832 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.237 0.763 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.255 0.745 40 H 0.177 0.823 41 H 0.195 0.805 42 H 0.182 0.818 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.337 -29.284 0.225 30.190 hybrid contribution -1.121 0.618 1.146 1.718 sum 6.217 -28.666 1.372 29.365 Atomic orbital electron populations 1.69675 1.06825 1.29234 1.50400 1.26031 0.96530 1.02394 0.96252 0.84870 0.78054 0.77102 0.78302 1.19777 1.19658 1.19599 1.19716 0.92731 0.84079 1.49882 0.90318 1.41941 1.09337 1.04732 1.65072 1.20927 0.88281 0.86241 0.82169 1.90499 1.15902 1.87978 1.56600 1.21544 0.93997 0.88063 1.03172 1.59983 1.18814 1.00539 1.51928 1.22643 0.95985 0.88366 1.02910 1.22001 0.93586 0.90428 0.88631 0.87228 1.86621 1.38728 1.95745 1.16103 1.22019 0.91628 0.85702 1.03685 1.45649 1.11894 1.04616 1.73284 1.18444 0.87790 0.83451 0.75937 1.90777 1.18975 1.84555 1.51674 1.19672 0.94440 0.92236 1.06069 1.21753 0.90562 1.01967 0.96287 1.21442 1.02026 0.90366 0.96710 1.21759 0.93355 0.99899 0.98976 1.17764 0.93847 0.78159 1.04806 1.91505 1.91466 1.35713 1.93817 1.21205 1.00548 0.91716 0.99937 0.91313 0.76959 0.87716 0.91474 0.83212 0.88941 0.93025 0.76321 0.90211 0.90522 0.74456 0.82251 0.80536 0.81766 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.11 5.29 -306.98 -1.62 -30.74 16 10 C 0.44 20.42 7.82 87.66 0.69 21.10 16 11 O -0.62 -34.30 15.78 -3.09 -0.05 -34.35 16 12 C 0.06 2.09 6.17 85.56 0.53 2.62 16 13 N -0.68 -19.58 6.13 -517.94 -3.17 -22.75 16 14 C 0.03 0.56 5.36 86.30 0.46 1.03 16 15 C 0.11 1.72 3.29 30.59 0.10 1.82 16 16 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 17 O -0.56 -8.78 12.60 -148.98 -1.88 -10.66 16 18 C 0.09 1.33 5.34 86.38 0.46 1.79 16 19 N -0.70 -9.73 5.40 -465.99 -2.52 -12.24 16 20 C 0.56 10.73 7.77 86.79 0.67 11.40 16 21 O -0.58 -15.95 16.35 -3.85 -0.06 -16.01 16 22 C -0.12 -1.86 5.87 -20.09 -0.12 -1.98 16 23 C -0.09 -0.74 9.54 22.53 0.21 -0.52 16 24 C -0.09 -0.50 10.03 22.22 0.22 -0.28 16 25 C -0.12 -1.04 10.02 22.37 0.22 -0.82 16 26 C 0.07 1.09 7.29 22.34 0.16 1.25 16 27 F -0.15 -2.55 17.26 44.97 0.78 -1.77 16 28 C -0.11 -2.00 9.57 22.57 0.22 -1.78 16 29 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.40 19.04 7.90 -92.72 -0.73 18.30 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.35 10.95 7.99 -89.69 -0.72 10.23 16 34 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.39 3.76 9.05 -74.06 -0.67 3.09 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.42 3.97 6.38 -92.71 -0.59 3.38 16 40 H 0.16 0.54 6.40 -2.91 -0.02 0.53 16 41 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 42 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 43 H 0.13 2.63 7.65 -2.91 -0.02 2.61 16 Total: -1.00 -77.14 379.92 -2.70 -79.85 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -1.60 Total: 35.68 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.12 Total: 17.34 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -7.03 Total: -114.73 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -1.99 Total: -61.02 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -77.14 -2.70 -79.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482703462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.693 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds