Wall clock time and date at job start Tue Mar 31 2020 23:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38671 * 120.79092 * 2 1 4 4 C 1.38186 * 119.16067 * 179.97438 * 3 2 1 5 5 N 1.31881 * 120.76757 * 0.02562 * 4 3 2 6 6 C 1.31859 * 121.72385 * 359.68830 * 5 4 3 7 7 C 1.38226 * 120.76244 * 0.57635 * 6 5 4 8 8 C 1.50700 * 120.41715 * 179.73011 * 7 6 5 9 9 N 1.46906 * 109.47183 * 259.72695 * 8 7 6 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 13 13 O 1.42900 * 109.47041 * 299.99294 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.47094 * 184.99933 * 14 11 10 16 16 C 1.34777 * 120.00297 * 179.97438 * 15 14 11 17 17 O 1.21286 * 119.99433 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00252 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47202 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99897 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00300 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99577 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00103 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99725 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47164 * 60.00216 * 24 22 20 26 26 H 1.48498 * 109.47145 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47137 * 300.00014 * 24 22 20 28 28 H 1.09000 * 109.46538 * 270.02490 * 1 2 3 29 29 H 1.09001 * 109.46837 * 30.01823 * 1 2 3 30 30 H 1.08994 * 109.47568 * 150.02208 * 1 2 3 31 31 H 1.08003 * 120.41903 * 359.95351 * 3 2 1 32 32 H 1.08000 * 119.61133 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.61876 * 180.29446 * 6 5 4 34 34 H 1.08995 * 109.46796 * 139.72900 * 8 7 6 35 35 H 1.09002 * 109.47497 * 19.72694 * 8 7 6 36 36 H 1.00899 * 110.99995 * 56.04682 * 9 8 7 37 37 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 38 38 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 39 39 H 0.96698 * 114.00516 * 300.00983 * 13 11 10 40 40 H 1.09008 * 109.46864 * 304.99696 * 14 11 10 41 41 H 1.09000 * 109.47679 * 64.99728 * 14 11 10 42 42 H 0.97004 * 120.00359 * 359.97438 * 15 14 11 43 43 H 1.08998 * 109.47338 * 300.00258 * 18 16 15 44 44 H 1.09000 * 109.47198 * 60.00453 * 18 16 15 45 45 H 0.97008 * 119.99783 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1517 0.0061 7 6 2.2166 -1.1909 0.0003 8 6 1.4908 -2.5116 0.0006 9 7 1.0443 -2.8254 -1.3633 10 6 0.3306 -4.1088 -1.4014 11 6 -0.1172 -4.4009 -2.8350 12 1 0.7560 -4.4513 -3.4852 13 8 -0.9862 -3.3592 -3.2841 14 6 -0.8612 -5.7372 -2.8745 15 7 -1.1853 -6.0747 -4.2628 16 6 -1.8446 -7.2165 -4.5425 17 8 -2.1700 -7.9643 -3.6447 18 6 -2.1786 -7.5633 -5.9704 19 16 -3.0586 -9.1443 -6.0173 20 6 -3.3163 -9.2997 -7.7534 21 1 -2.9580 -8.5321 -8.4234 22 6 -3.9807 -10.4081 -8.2599 23 7 -4.4178 -11.3434 -7.4434 24 14 -4.2545 -10.5725 -10.1004 25 1 -2.9428 -10.5916 -10.7963 26 1 -4.9819 -11.8362 -10.3817 27 1 -5.0560 -9.4208 -10.5864 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6967 2.1378 -0.0008 32 1 4.1583 2.0753 0.0010 33 1 4.1584 -2.0751 0.0108 34 1 0.6258 -2.4506 0.6610 35 1 2.1620 -3.2951 0.3525 36 1 1.8210 -2.8240 -2.0073 37 1 -0.5425 -4.0585 -0.7507 38 1 0.9935 -4.9034 -1.0591 39 1 -1.7861 -3.2567 -2.7506 40 1 -0.2298 -6.5173 -2.4489 41 1 -1.7812 -5.6583 -2.2955 42 1 -0.9255 -5.4765 -4.9808 43 1 -2.8105 -6.7835 -6.3955 44 1 -1.2588 -7.6418 -6.5499 45 1 -4.8818 -12.1183 -7.7974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482708646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:48 Heat of formation + Delta-G solvation = -59.948880 kcal Electronic energy + Delta-G solvation = -25225.294583 eV Core-core repulsion = 21368.538090 eV Total energy + Delta-G solvation = -3856.756493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78007 -39.46053 -38.18386 -36.24414 -34.16128 -34.11110 -32.42954 -32.24373 -30.49284 -28.95501 -28.22379 -26.34308 -25.46940 -24.08015 -22.99495 -22.18696 -21.65080 -20.30951 -17.93728 -17.48495 -17.13638 -16.81313 -16.54078 -16.39336 -15.82653 -15.49295 -15.26860 -15.09259 -14.80257 -14.71518 -14.37166 -14.14770 -13.89778 -13.52135 -13.25751 -13.11947 -13.07208 -12.89903 -12.83661 -12.78689 -12.54917 -12.29066 -11.76492 -11.71113 -11.32922 -11.04700 -11.03653 -10.78208 -10.41395 -9.85968 -9.82753 -9.81915 -9.51363 -9.41934 -9.06716 -8.96639 -8.89925 -8.24825 -6.50537 -6.21722 -3.92471 0.63989 0.84431 2.95419 3.07180 3.23244 3.23810 3.28341 3.32719 3.58537 3.83560 4.00209 4.15120 4.20624 4.25026 4.30925 4.37456 4.47768 4.53853 4.62515 4.74078 4.91664 5.00194 5.08251 5.11358 5.13449 5.14896 5.16758 5.20079 5.22020 5.36298 5.50042 5.59026 5.67490 5.72666 5.76766 5.89516 5.96176 6.14566 6.26881 6.37124 6.57082 6.78850 7.37716 7.55357 7.59353 7.69029 8.35047 8.58534 9.23545 10.85640 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.001460 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.943670 B =19170.124650 C =19334.533647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 C -0.179 4.179 4 C 0.100 3.900 5 N -0.492 5.492 6 C 0.107 3.893 7 C -0.141 4.141 8 C 0.102 3.898 9 N -0.673 5.673 10 C 0.028 3.972 11 C 0.101 3.899 12 H 0.103 0.897 13 O -0.545 6.545 14 C 0.091 3.909 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.345 0.655 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.376 0.624 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.533 25.098 16.753 33.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.199 4.199 4 C -0.056 4.056 5 N -0.200 5.200 6 C -0.051 4.051 7 C -0.143 4.143 8 C -0.027 4.027 9 N -0.304 5.304 10 C -0.102 4.102 11 C 0.041 3.959 12 H 0.121 0.879 13 O -0.350 6.350 14 C -0.035 4.035 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.163 0.837 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.223 0.777 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.687 24.100 17.881 32.983 hybrid contribution -0.166 0.364 -1.956 1.996 sum 13.520 24.464 15.925 32.170 Atomic orbital electron populations 1.20931 0.89941 1.04614 1.02539 1.20228 0.97065 0.92093 0.92843 1.22102 0.95625 0.98836 1.03289 1.22762 0.91863 0.96244 0.94764 1.67694 1.41184 0.98486 1.12683 1.22694 0.91053 0.96341 0.94979 1.20655 0.94693 0.95540 1.03452 1.20776 0.98383 0.92234 0.91288 1.60364 1.31274 1.32154 1.06653 1.22622 0.99485 0.90413 0.97680 1.22093 0.93369 0.85863 0.94568 0.87927 1.86609 1.35917 1.54657 1.57784 1.21910 1.00317 0.96475 0.84755 1.45866 1.60869 1.23912 1.08161 1.20334 0.76572 0.80103 0.91191 1.90701 1.51586 1.49196 1.47989 1.23525 1.05092 1.06899 0.94857 1.85370 1.71160 1.16732 1.10155 1.22837 1.43598 1.10101 0.91949 0.90942 1.24989 0.94735 0.94732 0.99070 1.70010 1.35941 1.09438 1.34932 0.86221 0.78514 0.77657 0.83091 1.19942 1.20805 1.19922 0.90960 0.91213 0.88974 0.84812 0.82846 0.83125 0.89720 0.93947 0.83673 0.90019 0.93660 0.77666 0.90898 0.91234 0.76315 0.89132 0.89213 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.36 36.01 0.34 -0.30 16 2 C -0.01 -0.09 5.92 -104.32 -0.62 -0.71 16 3 C -0.18 -1.13 9.82 -39.44 -0.39 -1.51 16 4 C 0.10 0.72 11.18 -17.55 -0.20 0.52 16 5 N -0.49 -4.41 10.36 -13.25 -0.14 -4.54 16 6 C 0.11 0.80 10.83 -17.54 -0.19 0.61 16 7 C -0.14 -0.93 5.41 -104.48 -0.57 -1.50 16 8 C 0.10 0.54 4.98 -4.97 -0.02 0.51 16 9 N -0.67 -3.83 5.80 -115.05 -0.67 -4.50 16 10 C 0.03 0.15 5.35 -3.82 -0.02 0.13 16 11 C 0.10 0.71 3.21 -26.73 -0.09 0.63 16 12 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 13 O -0.54 -4.44 13.15 -35.23 -0.46 -4.90 16 14 C 0.09 0.91 5.31 -4.04 -0.02 0.89 16 15 N -0.73 -9.41 5.50 -60.29 -0.33 -9.74 16 16 C 0.53 9.77 7.85 -10.99 -0.09 9.68 16 17 O -0.52 -11.62 15.86 5.55 0.09 -11.54 16 18 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.33 8.10 -51.93 -0.42 -0.10 16 30 H 0.09 0.54 6.54 -51.93 -0.34 0.20 16 31 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.15 0.84 8.04 -52.49 -0.42 0.42 16 34 H 0.08 0.42 7.38 -51.93 -0.38 0.04 16 35 H 0.04 0.20 8.02 -51.93 -0.42 -0.22 16 36 H 0.34 2.07 8.72 -39.29 -0.34 1.73 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.38 2.20 9.04 45.56 0.41 2.61 16 40 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 4.35 8.47 -40.82 -0.35 4.00 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -36.24 397.39 -9.49 -45.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.03 Total: 3.32 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.44 Total: -6.92 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.40 Total: -44.20 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.38 Total: -16.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.24 -9.49 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482708646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.216 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds