Wall clock time and date at job start Tue Mar 31 2020 23:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38671 * 120.79092 * 2 1 4 4 C 1.38186 * 119.16067 * 179.97438 * 3 2 1 5 5 N 1.31881 * 120.76757 * 0.02562 * 4 3 2 6 6 C 1.31859 * 121.72385 * 359.68830 * 5 4 3 7 7 C 1.38226 * 120.76244 * 0.57635 * 6 5 4 8 8 C 1.50700 * 120.41715 * 179.73011 * 7 6 5 9 9 N 1.46906 * 109.47183 * 259.72695 * 8 7 6 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47399 * 59.99697 * 11 10 9 13 13 O 1.42900 * 109.47041 * 299.99294 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.47094 * 184.99933 * 14 11 10 16 16 C 1.34777 * 120.00297 * 179.97438 * 15 14 11 17 17 O 1.21286 * 119.99433 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00252 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47202 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99897 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00300 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99577 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00103 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99725 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47164 * 60.00216 * 24 22 20 26 26 H 1.48498 * 109.47145 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47137 * 300.00014 * 24 22 20 28 28 H 1.09000 * 109.46538 * 270.02490 * 1 2 3 29 29 H 1.09001 * 109.46837 * 30.01823 * 1 2 3 30 30 H 1.08994 * 109.47568 * 150.02208 * 1 2 3 31 31 H 1.08003 * 120.41903 * 359.95351 * 3 2 1 32 32 H 1.08000 * 119.61133 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.61876 * 180.29446 * 6 5 4 34 34 H 1.08995 * 109.46796 * 139.72900 * 8 7 6 35 35 H 1.09002 * 109.47497 * 19.72694 * 8 7 6 36 36 H 1.00899 * 110.99995 * 56.04682 * 9 8 7 37 37 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 38 38 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 39 39 H 0.96698 * 114.00516 * 300.00983 * 13 11 10 40 40 H 1.09008 * 109.46864 * 304.99696 * 14 11 10 41 41 H 1.09000 * 109.47679 * 64.99728 * 14 11 10 42 42 H 0.97004 * 120.00359 * 359.97438 * 15 14 11 43 43 H 1.08998 * 109.47338 * 300.00258 * 18 16 15 44 44 H 1.09000 * 109.47198 * 60.00453 * 18 16 15 45 45 H 0.97008 * 119.99783 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1517 0.0061 7 6 2.2166 -1.1909 0.0003 8 6 1.4908 -2.5116 0.0006 9 7 1.0443 -2.8254 -1.3633 10 6 0.3306 -4.1088 -1.4014 11 6 -0.1172 -4.4009 -2.8350 12 1 0.7560 -4.4513 -3.4852 13 8 -0.9862 -3.3592 -3.2841 14 6 -0.8612 -5.7372 -2.8745 15 7 -1.1853 -6.0747 -4.2628 16 6 -1.8446 -7.2165 -4.5425 17 8 -2.1700 -7.9643 -3.6447 18 6 -2.1786 -7.5633 -5.9704 19 16 -3.0586 -9.1443 -6.0173 20 6 -3.3163 -9.2997 -7.7534 21 1 -2.9580 -8.5321 -8.4234 22 6 -3.9807 -10.4081 -8.2599 23 7 -4.4178 -11.3434 -7.4434 24 14 -4.2545 -10.5725 -10.1004 25 1 -2.9428 -10.5916 -10.7963 26 1 -4.9819 -11.8362 -10.3817 27 1 -5.0560 -9.4208 -10.5864 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6967 2.1378 -0.0008 32 1 4.1583 2.0753 0.0010 33 1 4.1584 -2.0751 0.0108 34 1 0.6258 -2.4506 0.6610 35 1 2.1620 -3.2951 0.3525 36 1 1.8210 -2.8240 -2.0073 37 1 -0.5425 -4.0585 -0.7507 38 1 0.9935 -4.9034 -1.0591 39 1 -1.7861 -3.2567 -2.7506 40 1 -0.2298 -6.5173 -2.4489 41 1 -1.7812 -5.6583 -2.2955 42 1 -0.9255 -5.4765 -4.9808 43 1 -2.8105 -6.7835 -6.3955 44 1 -1.2588 -7.6418 -6.5499 45 1 -4.8818 -12.1183 -7.7974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482708646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:47 Heat of formation + Delta-G solvation = -89.448383 kcal Electronic energy + Delta-G solvation = -25226.573777 eV Core-core repulsion = 21368.538090 eV Total energy + Delta-G solvation = -3858.035688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26091 -40.70354 -38.98513 -36.79299 -35.26354 -34.62802 -34.58072 -32.77020 -31.62246 -29.94221 -28.75437 -27.69612 -26.92935 -24.74138 -23.45768 -22.78861 -22.15540 -21.65748 -19.84942 -18.15338 -17.87546 -17.71644 -17.32897 -17.23357 -16.87585 -16.71754 -16.29316 -16.08299 -15.91275 -15.65082 -15.41585 -15.01088 -14.65108 -14.58377 -14.37171 -14.14633 -13.86629 -13.68080 -13.51989 -13.30528 -13.25652 -13.16840 -13.16107 -12.86063 -12.71923 -12.62556 -12.15348 -11.92510 -11.75567 -11.17802 -11.12712 -10.84091 -10.36543 -10.31108 -10.28502 -10.13415 -9.98094 -9.35230 -8.66591 -8.34393 -6.12599 0.15719 0.35021 1.27143 1.44318 1.47012 1.56960 1.60883 2.23382 2.28757 2.78004 2.99711 3.19675 3.33042 3.55021 3.59916 3.80430 3.82341 3.90212 3.91780 4.00759 4.07064 4.14056 4.16125 4.30013 4.45819 4.51748 4.55187 4.59933 4.69532 4.70903 4.74722 4.77712 4.84630 4.94145 5.08085 5.14024 5.32073 5.41016 5.42019 5.50983 5.82187 5.96092 6.19783 6.34244 6.48769 6.88324 7.05091 7.06859 7.23717 8.74524 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033248 B = 0.001460 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.943670 B =19170.124650 C =19334.533647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.182 4.182 4 C 0.086 3.914 5 N -0.523 5.523 6 C 0.093 3.907 7 C -0.143 4.143 8 C 0.107 3.893 9 N -0.675 5.675 10 C 0.035 3.965 11 C 0.117 3.883 12 H 0.107 0.893 13 O -0.557 6.557 14 C 0.089 3.911 15 N -0.708 5.708 16 C 0.534 3.466 17 O -0.567 6.567 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.550 4.550 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.262 1.262 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.344 0.656 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.386 0.614 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 27.006 15.959 34.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.034 4.034 3 C -0.201 4.201 4 C -0.070 4.070 5 N -0.232 5.232 6 C -0.064 4.064 7 C -0.145 4.145 8 C -0.022 4.022 9 N -0.307 5.307 10 C -0.095 4.095 11 C 0.057 3.943 12 H 0.125 0.875 13 O -0.364 6.364 14 C -0.036 4.036 15 N -0.362 5.362 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.187 1.187 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.162 0.838 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.235 0.765 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.162 26.070 17.094 34.240 hybrid contribution -0.248 -0.096 -1.623 1.645 sum 13.914 25.974 15.471 33.281 Atomic orbital electron populations 1.20911 0.88893 1.04580 1.03126 1.20531 0.97942 0.92291 0.92660 1.22362 0.95454 0.99740 1.02573 1.23137 0.92626 0.96497 0.94723 1.67684 1.42280 0.99396 1.13870 1.22950 0.91722 0.96507 0.95261 1.20778 0.94464 0.96228 1.03076 1.20747 0.98560 0.91767 0.91078 1.60340 1.31315 1.32130 1.06874 1.22524 0.99870 0.90583 0.96527 1.21943 0.92756 0.83850 0.95765 0.87509 1.86590 1.36645 1.54631 1.58493 1.22129 1.00649 0.98139 0.82639 1.45636 1.58468 1.21942 1.10108 1.20028 0.77028 0.81183 0.89826 1.90690 1.53966 1.51098 1.48780 1.23376 1.05073 1.02817 0.96942 1.85522 1.73111 1.22550 1.11079 1.23189 1.43776 1.10674 0.92093 0.89963 1.26114 0.94109 0.94137 1.04645 1.70175 1.36872 1.10175 1.37474 0.85011 0.78909 0.77977 0.76144 1.18710 1.20333 1.18687 0.90013 0.90680 0.89509 0.82791 0.81115 0.82057 0.89249 0.93212 0.83840 0.89343 0.93045 0.76499 0.91144 0.91393 0.74717 0.87382 0.87337 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.36 71.24 0.67 -0.34 16 2 C -0.03 -0.31 5.92 -19.67 -0.12 -0.42 16 3 C -0.18 -2.06 9.82 22.36 0.22 -1.84 16 4 C 0.09 1.17 11.18 84.67 0.95 2.12 16 5 N -0.52 -9.22 10.36 -195.84 -2.03 -11.25 16 6 C 0.09 1.33 10.83 84.69 0.92 2.25 16 7 C -0.14 -1.73 5.41 -19.77 -0.11 -1.84 16 8 C 0.11 0.94 4.98 85.56 0.43 1.37 16 9 N -0.68 -6.34 5.80 -517.91 -3.00 -9.34 16 10 C 0.03 0.30 5.35 86.30 0.46 0.76 16 11 C 0.12 1.37 3.21 30.59 0.10 1.47 16 12 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 13 O -0.56 -7.69 13.15 -148.98 -1.96 -9.65 16 14 C 0.09 1.63 5.31 86.38 0.46 2.09 16 15 N -0.71 -16.82 5.50 -463.05 -2.55 -19.37 16 16 C 0.53 19.19 7.85 87.66 0.69 19.88 16 17 O -0.57 -25.60 15.86 -3.05 -0.05 -25.65 16 18 C -0.13 -5.16 6.16 71.23 0.44 -4.72 16 19 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 20 C -0.55 -31.42 9.50 67.96 0.65 -30.78 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.84 5.49 84.86 0.47 1.31 16 23 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.51 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.55 8.10 -2.39 -0.02 0.54 16 30 H 0.09 0.85 6.54 -2.39 -0.02 0.83 16 31 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.16 1.72 8.04 -2.91 -0.02 1.70 16 34 H 0.09 0.71 7.38 -2.39 -0.02 0.70 16 35 H 0.05 0.37 8.02 -2.39 -0.02 0.35 16 36 H 0.34 3.48 8.72 -89.69 -0.78 2.70 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.39 3.60 9.04 -74.06 -0.67 2.93 16 40 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.42 7.85 8.47 -92.71 -0.79 7.07 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -80.02 397.39 -3.43 -83.45 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -1.21 Total: 20.00 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.21 Total: -8.69 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -7.29 Total: -95.51 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -2.01 Total: -35.30 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -80.02 -3.43 -83.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482708646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.994 kcal (2) G-P(sol) polarization free energy of solvation -80.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds