Wall clock time and date at job start Tue Mar 31 2020 23:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00057 * 2 1 4 4 C 1.50701 * 109.46799 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90388 * 269.95929 * 4 3 2 6 6 C 1.29435 * 117.35962 * 180.02562 * 5 4 3 7 7 S 1.70952 * 110.39516 * 359.72836 * 6 5 4 8 8 C 1.35662 * 122.90288 * 90.00324 * 4 3 2 9 9 C 1.46688 * 126.12992 * 359.96050 * 8 4 3 10 10 O 1.21687 * 120.00174 * 352.82469 * 9 8 4 11 11 N 1.34783 * 119.99747 * 172.82760 * 9 8 4 12 12 C 1.48139 * 127.83912 * 353.99437 * 11 9 8 13 13 C 1.54388 * 104.61740 * 219.58689 * 12 11 9 14 14 C 1.54283 * 104.95875 * 336.13736 * 13 12 11 15 15 C 1.53000 * 110.34677 * 118.97881 * 14 13 12 16 16 C 1.53005 * 110.33826 * 241.12735 * 14 13 12 17 17 N 1.46502 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.36937 * 119.99882 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00063 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31612 * 120.00150 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99704 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47235 * 120.00240 * 22 20 18 25 25 H 1.48498 * 109.47345 * 240.00120 * 22 20 18 26 26 C 1.48145 * 127.83515 * 173.99777 * 11 9 8 27 27 H 1.09007 * 109.46799 * 60.00359 * 1 2 3 28 28 H 1.09001 * 109.47517 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47087 * 300.00325 * 1 2 3 30 30 H 1.08998 * 109.46654 * 59.99790 * 3 2 1 31 31 H 1.08994 * 109.47046 * 299.99746 * 3 2 1 32 32 H 1.08001 * 124.80264 * 179.97438 * 6 5 4 33 33 H 1.08996 * 110.40544 * 100.80122 * 12 11 9 34 34 H 1.09001 * 110.40784 * 338.37041 * 12 11 9 35 35 H 1.09000 * 110.34395 * 95.00317 * 13 12 11 36 36 H 1.08999 * 110.34355 * 217.15449 * 13 12 11 37 37 H 1.08998 * 109.47442 * 59.99293 * 15 14 13 38 38 H 1.09003 * 109.47053 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46675 * 299.99469 * 15 14 13 40 40 H 1.09001 * 109.47156 * 299.99913 * 16 14 13 41 41 H 1.08996 * 109.47068 * 60.00196 * 16 14 13 42 42 H 0.97001 * 120.00146 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99987 * 179.97438 * 21 20 18 44 44 H 1.09006 * 110.40588 * 21.62772 * 26 11 9 45 45 H 1.08997 * 110.50341 * 259.25016 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2212 1.1311 1.1003 6 6 5.5056 1.0297 0.9758 7 16 5.9424 0.9866 -0.6764 8 6 4.2477 1.1280 -1.1381 9 6 3.7249 1.1685 -2.5080 10 8 2.5243 1.1308 -2.7025 11 7 4.5745 1.2473 -3.5514 12 6 6.0447 1.4249 -3.5148 13 6 6.3492 2.3946 -4.6769 14 6 5.1656 2.2306 -5.6528 15 6 4.4217 3.5578 -5.8147 16 6 5.6617 1.7310 -7.0113 17 7 4.5239 1.5816 -7.9219 18 6 4.7257 1.1444 -9.2038 19 1 5.7236 0.9092 -9.5434 20 6 3.6476 1.0033 -10.0668 21 7 2.4315 1.2903 -9.6531 22 14 3.9228 0.4061 -11.8152 23 1 5.3702 0.1532 -12.0298 24 1 3.1633 -0.8510 -12.0343 25 1 3.4535 1.4409 -12.7714 26 6 4.2497 1.1761 -4.9951 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 6.2024 0.9756 1.7992 33 1 6.5469 0.4707 -3.6745 34 1 6.3512 1.8623 -2.5646 35 1 6.3994 3.4202 -4.3113 36 1 7.2849 2.1204 -5.1639 37 1 5.1043 4.3115 -6.2072 38 1 3.5897 3.4260 -6.5065 39 1 4.0413 3.8815 -4.8458 40 1 6.3682 2.4497 -7.4268 41 1 6.1552 0.7673 -6.8858 42 1 3.6276 1.7931 -7.6170 43 1 1.6782 1.1921 -10.2563 44 1 3.2018 1.4259 -5.1617 45 1 4.4701 0.1834 -5.3875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484116447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:24 Heat of formation + Delta-G solvation = -6.748276 kcal Electronic energy + Delta-G solvation = -27583.473486 eV Core-core repulsion = 23729.023944 eV Total energy + Delta-G solvation = -3854.449542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66774 -39.81861 -37.91142 -37.55638 -34.88794 -32.82960 -31.58444 -30.50238 -29.35978 -28.60951 -26.65489 -26.13670 -25.33870 -24.75619 -23.69752 -22.13769 -21.35220 -19.08497 -18.88429 -18.56970 -17.18653 -16.72165 -16.52460 -16.27476 -15.94730 -15.56891 -15.18208 -14.80903 -14.65823 -14.39520 -14.22353 -13.86715 -13.63885 -13.47171 -13.18338 -12.96455 -12.55999 -12.52995 -12.36601 -12.14702 -11.75968 -11.59579 -11.53205 -11.41087 -11.02738 -10.86186 -10.63895 -10.57360 -10.30074 -10.22590 -9.99853 -9.89259 -9.75915 -9.64508 -9.57459 -9.30604 -8.89719 -8.68777 -6.93339 -5.76918 -3.05986 -0.05390 0.86856 1.25685 2.12559 2.80463 2.97895 3.43197 3.48622 3.51103 3.66006 4.09695 4.31677 4.54433 4.58983 4.68414 4.76873 4.84976 4.93124 5.17634 5.24136 5.29716 5.31455 5.37850 5.40356 5.47017 5.58117 5.62708 5.68986 5.74925 5.78911 5.92098 5.98366 6.06421 6.11351 6.18720 6.36857 6.49767 6.62966 6.73142 6.80291 7.02615 7.27955 7.46139 7.69740 8.01186 8.41459 9.53041 10.09838 10.44125 11.45752 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002838 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.779466 B = 9863.889252 C =11118.647690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.132 3.868 4 C 0.135 3.865 5 N -0.464 5.464 6 C 0.011 3.989 7 S 0.189 5.811 8 C -0.262 4.262 9 C 0.611 3.389 10 O -0.513 6.513 11 N -0.617 5.617 12 C 0.092 3.908 13 C -0.120 4.120 14 C -0.080 4.080 15 C -0.131 4.131 16 C 0.168 3.832 17 N -0.731 5.731 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.123 3.877 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.204 0.796 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.089 0.911 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.888 1.990 22.955 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.053 3.947 4 C -0.003 4.003 5 N -0.177 5.177 6 C -0.284 4.284 7 S 0.445 5.555 8 C -0.386 4.386 9 C 0.397 3.603 10 O -0.390 6.390 11 N -0.351 5.351 12 C -0.032 4.032 13 C -0.159 4.159 14 C -0.081 4.081 15 C -0.188 4.188 16 C 0.040 3.960 17 N -0.376 5.376 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.001 3.999 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.145 1.649 22.843 24.307 hybrid contribution -1.024 -0.025 -0.700 1.241 sum 7.120 1.624 22.143 23.317 Atomic orbital electron populations 1.22731 0.80381 1.02848 1.00138 1.87889 1.20043 1.26268 1.95485 1.20943 0.85109 0.86330 1.02298 1.20217 0.97195 0.97533 0.85363 1.66082 1.05135 1.15367 1.31161 1.28942 0.95319 1.01908 1.02231 1.84176 1.05402 1.64498 1.01401 1.25633 0.96604 1.17325 0.99079 1.16178 0.85367 0.77278 0.81430 1.90844 1.13717 1.50308 1.84143 1.48857 1.07685 1.71443 1.07093 1.22674 0.80838 1.00506 0.99164 1.22603 0.99167 0.99295 0.94862 1.21701 0.94580 0.96024 0.95809 1.21787 1.00888 0.95170 1.00995 1.20721 0.91377 0.96956 0.86957 1.42418 1.04650 1.80436 1.10124 1.19242 0.93323 1.36469 0.88136 0.91160 1.24737 0.95345 1.02379 0.98408 1.69663 0.97970 1.54890 1.35416 0.86137 0.77194 0.78032 0.84922 1.20598 1.21895 1.21912 1.22546 1.01267 0.99689 0.76355 0.93391 0.89561 0.94230 0.91892 0.89292 0.77914 0.90066 0.90733 0.90679 0.89575 0.92592 0.91024 0.93689 0.95825 0.96083 0.78028 0.93517 0.89208 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.52 10.69 -35.23 -0.38 -5.89 16 3 C 0.13 1.77 5.66 36.01 0.20 1.97 16 4 C 0.14 1.83 6.42 -83.89 -0.54 1.29 16 5 N -0.46 -5.61 10.50 -11.53 -0.12 -5.73 16 6 C 0.01 0.09 12.22 51.75 0.63 0.73 16 7 S 0.19 1.62 19.08 -107.50 -2.05 -0.43 16 8 C -0.26 -3.44 6.37 -37.09 -0.24 -3.67 16 9 C 0.61 9.55 7.84 -12.85 -0.10 9.45 16 10 O -0.51 -9.60 14.63 5.20 0.08 -9.52 16 11 N -0.62 -8.75 3.32 -170.85 -0.57 -9.32 16 12 C 0.09 0.97 5.99 -2.41 -0.01 0.96 16 13 C -0.12 -1.33 6.30 -25.33 -0.16 -1.49 16 14 C -0.08 -1.20 0.73 -153.11 -0.11 -1.31 16 15 C -0.13 -2.05 8.07 37.16 0.30 -1.75 16 16 C 0.17 3.11 4.87 -4.04 -0.02 3.09 16 17 N -0.73 -17.66 5.12 -59.90 -0.31 -17.96 16 18 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.12 2.00 5.73 -2.41 -0.01 1.98 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.27 6.20 -51.93 -0.32 0.95 16 32 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.65 4.85 -30.83 -0.15 0.50 16 35 H 0.07 0.75 7.71 -51.93 -0.40 0.35 16 36 H 0.09 0.84 7.72 -51.93 -0.40 0.44 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.32 6.74 -51.93 -0.35 0.97 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 42 H 0.39 9.86 6.18 -40.82 -0.25 9.61 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 1.68 7.56 -51.93 -0.39 1.29 16 45 H 0.08 1.42 7.83 -51.93 -0.41 1.01 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -34.09 376.19 -7.61 -41.71 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.45 Total: 5.90 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 0.81 Total: 5.59 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.27 Total: -60.20 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.30 Total: -15.42 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.05 Total: -0.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.09 -7.61 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484116447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.959 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds