Wall clock time and date at job start Tue Mar 31 2020 23:15:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42899 * 114.00057 * 2 1
4 4 C 1.50701 * 109.46799 * 179.97438 * 3 2 1
5 5 N 1.30939 * 122.90388 * 269.95929 * 4 3 2
6 6 C 1.29435 * 117.35962 * 180.02562 * 5 4 3
7 7 S 1.70952 * 110.39516 * 359.72836 * 6 5 4
8 8 C 1.35662 * 122.90288 * 90.00324 * 4 3 2
9 9 C 1.46688 * 126.12992 * 359.96050 * 8 4 3
10 10 O 1.21687 * 120.00174 * 352.82469 * 9 8 4
11 11 N 1.34783 * 119.99747 * 172.82760 * 9 8 4
12 12 C 1.48139 * 127.83912 * 353.99437 * 11 9 8
13 13 C 1.54388 * 104.61740 * 219.58689 * 12 11 9
14 14 C 1.54283 * 104.95875 * 336.13736 * 13 12 11
15 15 C 1.53000 * 110.34677 * 118.97881 * 14 13 12
16 16 C 1.53005 * 110.33826 * 241.12735 * 14 13 12
17 17 N 1.46502 * 109.46965 * 179.97438 * 16 14 13
18 18 C 1.36937 * 119.99882 * 179.97438 * 17 16 14
19 19 H 1.08002 * 120.00063 * 0.02562 * 18 17 16
20 20 C 1.38817 * 119.99737 * 180.02562 * 18 17 16
21 21 N 1.31612 * 120.00150 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 119.99704 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47185 * 0.02562 * 22 20 18
24 24 H 1.48498 * 109.47235 * 120.00240 * 22 20 18
25 25 H 1.48498 * 109.47345 * 240.00120 * 22 20 18
26 26 C 1.48145 * 127.83515 * 173.99777 * 11 9 8
27 27 H 1.09007 * 109.46799 * 60.00359 * 1 2 3
28 28 H 1.09001 * 109.47517 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47087 * 300.00325 * 1 2 3
30 30 H 1.08998 * 109.46654 * 59.99790 * 3 2 1
31 31 H 1.08994 * 109.47046 * 299.99746 * 3 2 1
32 32 H 1.08001 * 124.80264 * 179.97438 * 6 5 4
33 33 H 1.08996 * 110.40544 * 100.80122 * 12 11 9
34 34 H 1.09001 * 110.40784 * 338.37041 * 12 11 9
35 35 H 1.09000 * 110.34395 * 95.00317 * 13 12 11
36 36 H 1.08999 * 110.34355 * 217.15449 * 13 12 11
37 37 H 1.08998 * 109.47442 * 59.99293 * 15 14 13
38 38 H 1.09003 * 109.47053 * 179.97438 * 15 14 13
39 39 H 1.09004 * 109.46675 * 299.99469 * 15 14 13
40 40 H 1.09001 * 109.47156 * 299.99913 * 16 14 13
41 41 H 1.08996 * 109.47068 * 60.00196 * 16 14 13
42 42 H 0.97001 * 120.00146 * 0.02562 * 17 16 14
43 43 H 0.97005 * 119.99987 * 179.97438 * 21 20 18
44 44 H 1.09006 * 110.40588 * 21.62772 * 26 11 9
45 45 H 1.08997 * 110.50341 * 259.25016 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 7 4.2212 1.1311 1.1003
6 6 5.5056 1.0297 0.9758
7 16 5.9424 0.9866 -0.6764
8 6 4.2477 1.1280 -1.1381
9 6 3.7249 1.1685 -2.5080
10 8 2.5243 1.1308 -2.7025
11 7 4.5745 1.2473 -3.5514
12 6 6.0447 1.4249 -3.5148
13 6 6.3492 2.3946 -4.6769
14 6 5.1656 2.2306 -5.6528
15 6 4.4217 3.5578 -5.8147
16 6 5.6617 1.7310 -7.0113
17 7 4.5239 1.5816 -7.9219
18 6 4.7257 1.1444 -9.2038
19 1 5.7236 0.9092 -9.5434
20 6 3.6476 1.0033 -10.0668
21 7 2.4315 1.2903 -9.6531
22 14 3.9228 0.4061 -11.8152
23 1 5.3702 0.1532 -12.0298
24 1 3.1633 -0.8510 -12.0343
25 1 3.4535 1.4409 -12.7714
26 6 4.2497 1.1761 -4.9951
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8899
30 1 1.6886 1.8463 0.8900
31 1 1.6887 1.8463 -0.8900
32 1 6.2024 0.9756 1.7992
33 1 6.5469 0.4707 -3.6745
34 1 6.3512 1.8623 -2.5646
35 1 6.3994 3.4202 -4.3113
36 1 7.2849 2.1204 -5.1639
37 1 5.1043 4.3115 -6.2072
38 1 3.5897 3.4260 -6.5065
39 1 4.0413 3.8815 -4.8458
40 1 6.3682 2.4497 -7.4268
41 1 6.1552 0.7673 -6.8858
42 1 3.6276 1.7931 -7.6170
43 1 1.6782 1.1921 -10.2563
44 1 3.2018 1.4259 -5.1617
45 1 4.4701 0.1834 -5.3875
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484116447.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:15:24
Heat of formation + Delta-G solvation = -6.748276 kcal
Electronic energy + Delta-G solvation = -27583.473486 eV
Core-core repulsion = 23729.023944 eV
Total energy + Delta-G solvation = -3854.449542 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.66774 -39.81861 -37.91142 -37.55638 -34.88794 -32.82960 -31.58444 -30.50238
-29.35978 -28.60951 -26.65489 -26.13670 -25.33870 -24.75619 -23.69752 -22.13769
-21.35220 -19.08497 -18.88429 -18.56970 -17.18653 -16.72165 -16.52460 -16.27476
-15.94730 -15.56891 -15.18208 -14.80903 -14.65823 -14.39520 -14.22353 -13.86715
-13.63885 -13.47171 -13.18338 -12.96455 -12.55999 -12.52995 -12.36601 -12.14702
-11.75968 -11.59579 -11.53205 -11.41087 -11.02738 -10.86186 -10.63895 -10.57360
-10.30074 -10.22590 -9.99853 -9.89259 -9.75915 -9.64508 -9.57459 -9.30604
-8.89719 -8.68777 -6.93339 -5.76918 -3.05986 -0.05390 0.86856 1.25685
2.12559 2.80463 2.97895 3.43197 3.48622 3.51103 3.66006 4.09695
4.31677 4.54433 4.58983 4.68414 4.76873 4.84976 4.93124 5.17634
5.24136 5.29716 5.31455 5.37850 5.40356 5.47017 5.58117 5.62708
5.68986 5.74925 5.78911 5.92098 5.98366 6.06421 6.11351 6.18720
6.36857 6.49767 6.62966 6.73142 6.80291 7.02615 7.27955 7.46139
7.69740 8.01186 8.41459 9.53041 10.09838 10.44125 11.45752
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015791 B = 0.002838 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1772.779466 B = 9863.889252 C =11118.647690
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.378 6.378
3 C 0.132 3.868
4 C 0.135 3.865
5 N -0.464 5.464
6 C 0.011 3.989
7 S 0.189 5.811
8 C -0.262 4.262
9 C 0.611 3.389
10 O -0.513 6.513
11 N -0.617 5.617
12 C 0.092 3.908
13 C -0.120 4.120
14 C -0.080 4.080
15 C -0.131 4.131
16 C 0.168 3.832
17 N -0.731 5.731
18 C -0.241 4.241
19 H 0.070 0.930
20 C -0.013 4.013
21 N -0.931 5.931
22 Si 0.906 3.094
23 H -0.281 1.281
24 H -0.292 1.292
25 H -0.292 1.292
26 C 0.123 3.877
27 H 0.047 0.953
28 H 0.086 0.914
29 H 0.039 0.961
30 H 0.063 0.937
31 H 0.089 0.911
32 H 0.204 0.796
33 H 0.081 0.919
34 H 0.075 0.925
35 H 0.075 0.925
36 H 0.086 0.914
37 H 0.055 0.945
38 H 0.071 0.929
39 H 0.044 0.956
40 H 0.024 0.976
41 H 0.021 0.979
42 H 0.385 0.615
43 H 0.255 0.745
44 H 0.089 0.911
45 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.888 1.990 22.955 24.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.297 6.297
3 C 0.053 3.947
4 C -0.003 4.003
5 N -0.177 5.177
6 C -0.284 4.284
7 S 0.445 5.555
8 C -0.386 4.386
9 C 0.397 3.603
10 O -0.390 6.390
11 N -0.351 5.351
12 C -0.032 4.032
13 C -0.159 4.159
14 C -0.081 4.081
15 C -0.188 4.188
16 C 0.040 3.960
17 N -0.376 5.376
18 C -0.372 4.372
19 H 0.088 0.912
20 C -0.209 4.209
21 N -0.579 5.579
22 Si 0.737 3.263
23 H -0.206 1.206
24 H -0.219 1.219
25 H -0.219 1.219
26 C 0.001 3.999
27 H 0.066 0.934
28 H 0.104 0.896
29 H 0.058 0.942
30 H 0.081 0.919
31 H 0.107 0.893
32 H 0.221 0.779
33 H 0.099 0.901
34 H 0.093 0.907
35 H 0.093 0.907
36 H 0.104 0.896
37 H 0.074 0.926
38 H 0.090 0.910
39 H 0.063 0.937
40 H 0.042 0.958
41 H 0.039 0.961
42 H 0.220 0.780
43 H 0.065 0.935
44 H 0.108 0.892
45 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 8.145 1.649 22.843 24.307
hybrid contribution -1.024 -0.025 -0.700 1.241
sum 7.120 1.624 22.143 23.317
Atomic orbital electron populations
1.22731 0.80381 1.02848 1.00138 1.87889 1.20043 1.26268 1.95485
1.20943 0.85109 0.86330 1.02298 1.20217 0.97195 0.97533 0.85363
1.66082 1.05135 1.15367 1.31161 1.28942 0.95319 1.01908 1.02231
1.84176 1.05402 1.64498 1.01401 1.25633 0.96604 1.17325 0.99079
1.16178 0.85367 0.77278 0.81430 1.90844 1.13717 1.50308 1.84143
1.48857 1.07685 1.71443 1.07093 1.22674 0.80838 1.00506 0.99164
1.22603 0.99167 0.99295 0.94862 1.21701 0.94580 0.96024 0.95809
1.21787 1.00888 0.95170 1.00995 1.20721 0.91377 0.96956 0.86957
1.42418 1.04650 1.80436 1.10124 1.19242 0.93323 1.36469 0.88136
0.91160 1.24737 0.95345 1.02379 0.98408 1.69663 0.97970 1.54890
1.35416 0.86137 0.77194 0.78032 0.84922 1.20598 1.21895 1.21912
1.22546 1.01267 0.99689 0.76355 0.93391 0.89561 0.94230 0.91892
0.89292 0.77914 0.90066 0.90733 0.90679 0.89575 0.92592 0.91024
0.93689 0.95825 0.96083 0.78028 0.93517 0.89208 0.89938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.39 11.01 101.05 1.11 1.50 16
2 O -0.38 -5.52 10.69 -35.23 -0.38 -5.89 16
3 C 0.13 1.77 5.66 36.01 0.20 1.97 16
4 C 0.14 1.83 6.42 -83.89 -0.54 1.29 16
5 N -0.46 -5.61 10.50 -11.53 -0.12 -5.73 16
6 C 0.01 0.09 12.22 51.75 0.63 0.73 16
7 S 0.19 1.62 19.08 -107.50 -2.05 -0.43 16
8 C -0.26 -3.44 6.37 -37.09 -0.24 -3.67 16
9 C 0.61 9.55 7.84 -12.85 -0.10 9.45 16
10 O -0.51 -9.60 14.63 5.20 0.08 -9.52 16
11 N -0.62 -8.75 3.32 -170.85 -0.57 -9.32 16
12 C 0.09 0.97 5.99 -2.41 -0.01 0.96 16
13 C -0.12 -1.33 6.30 -25.33 -0.16 -1.49 16
14 C -0.08 -1.20 0.73 -153.11 -0.11 -1.31 16
15 C -0.13 -2.05 8.07 37.16 0.30 -1.75 16
16 C 0.17 3.11 4.87 -4.04 -0.02 3.09 16
17 N -0.73 -17.66 5.12 -59.90 -0.31 -17.96 16
18 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16
19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
21 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16
22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16
23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
26 C 0.12 2.00 5.73 -2.41 -0.01 1.98 16
27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16
30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.09 1.27 6.20 -51.93 -0.32 0.95 16
32 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16
33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.08 0.65 4.85 -30.83 -0.15 0.50 16
35 H 0.07 0.75 7.71 -51.93 -0.40 0.35 16
36 H 0.09 0.84 7.72 -51.93 -0.40 0.44 16
37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
38 H 0.07 1.32 6.74 -51.93 -0.35 0.97 16
39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16
42 H 0.39 9.86 6.18 -40.82 -0.25 9.61 16
43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
44 H 0.09 1.68 7.56 -51.93 -0.39 1.29 16
45 H 0.08 1.42 7.83 -51.93 -0.41 1.01 16
LS Contribution 376.19 15.07 5.67 5.67
Total: -1.00 -34.09 376.19 -7.61 -41.71
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -6.45 Total: 5.90 kcal
Atomic # 6 Polarization: 4.78 SS G_CDS: 0.81 Total: 5.59 kcal
Atomic # 7 Polarization: -59.93 SS G_CDS: -0.27 Total: -60.20 kcal
Atomic # 8 Polarization: -15.12 SS G_CDS: -0.30 Total: -15.42 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal
Atomic # 16 Polarization: 1.62 SS G_CDS: -2.05 Total: -0.43 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -34.09 -7.61 -41.71 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484116447.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.959 kcal
(2) G-P(sol) polarization free energy of solvation -34.094 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds