Wall clock time and date at job start Tue Mar 31 2020 23:15:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42899 * 114.00057 * 2 1
4 4 C 1.50701 * 109.46799 * 179.97438 * 3 2 1
5 5 N 1.30939 * 122.90388 * 269.95929 * 4 3 2
6 6 C 1.29435 * 117.35962 * 180.02562 * 5 4 3
7 7 S 1.70952 * 110.39516 * 359.72836 * 6 5 4
8 8 C 1.35662 * 122.90288 * 90.00324 * 4 3 2
9 9 C 1.46688 * 126.12992 * 359.96050 * 8 4 3
10 10 O 1.21687 * 120.00174 * 352.82469 * 9 8 4
11 11 N 1.34783 * 119.99747 * 172.82760 * 9 8 4
12 12 C 1.48139 * 127.83912 * 353.99437 * 11 9 8
13 13 C 1.54388 * 104.61740 * 219.58689 * 12 11 9
14 14 C 1.54283 * 104.95875 * 336.13736 * 13 12 11
15 15 C 1.53000 * 110.34677 * 118.97881 * 14 13 12
16 16 C 1.53005 * 110.33826 * 241.12735 * 14 13 12
17 17 N 1.46502 * 109.46965 * 179.97438 * 16 14 13
18 18 C 1.36937 * 119.99882 * 179.97438 * 17 16 14
19 19 H 1.08002 * 120.00063 * 0.02562 * 18 17 16
20 20 C 1.38817 * 119.99737 * 180.02562 * 18 17 16
21 21 N 1.31612 * 120.00150 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 119.99704 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47185 * 0.02562 * 22 20 18
24 24 H 1.48498 * 109.47235 * 120.00240 * 22 20 18
25 25 H 1.48498 * 109.47345 * 240.00120 * 22 20 18
26 26 C 1.48145 * 127.83515 * 173.99777 * 11 9 8
27 27 H 1.09007 * 109.46799 * 60.00359 * 1 2 3
28 28 H 1.09001 * 109.47517 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47087 * 300.00325 * 1 2 3
30 30 H 1.08998 * 109.46654 * 59.99790 * 3 2 1
31 31 H 1.08994 * 109.47046 * 299.99746 * 3 2 1
32 32 H 1.08001 * 124.80264 * 179.97438 * 6 5 4
33 33 H 1.08996 * 110.40544 * 100.80122 * 12 11 9
34 34 H 1.09001 * 110.40784 * 338.37041 * 12 11 9
35 35 H 1.09000 * 110.34395 * 95.00317 * 13 12 11
36 36 H 1.08999 * 110.34355 * 217.15449 * 13 12 11
37 37 H 1.08998 * 109.47442 * 59.99293 * 15 14 13
38 38 H 1.09003 * 109.47053 * 179.97438 * 15 14 13
39 39 H 1.09004 * 109.46675 * 299.99469 * 15 14 13
40 40 H 1.09001 * 109.47156 * 299.99913 * 16 14 13
41 41 H 1.08996 * 109.47068 * 60.00196 * 16 14 13
42 42 H 0.97001 * 120.00146 * 0.02562 * 17 16 14
43 43 H 0.97005 * 119.99987 * 179.97438 * 21 20 18
44 44 H 1.09006 * 110.40588 * 21.62772 * 26 11 9
45 45 H 1.08997 * 110.50341 * 259.25016 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 7 4.2212 1.1311 1.1003
6 6 5.5056 1.0297 0.9758
7 16 5.9424 0.9866 -0.6764
8 6 4.2477 1.1280 -1.1381
9 6 3.7249 1.1685 -2.5080
10 8 2.5243 1.1308 -2.7025
11 7 4.5745 1.2473 -3.5514
12 6 6.0447 1.4249 -3.5148
13 6 6.3492 2.3946 -4.6769
14 6 5.1656 2.2306 -5.6528
15 6 4.4217 3.5578 -5.8147
16 6 5.6617 1.7310 -7.0113
17 7 4.5239 1.5816 -7.9219
18 6 4.7257 1.1444 -9.2038
19 1 5.7236 0.9092 -9.5434
20 6 3.6476 1.0033 -10.0668
21 7 2.4315 1.2903 -9.6531
22 14 3.9228 0.4061 -11.8152
23 1 5.3702 0.1532 -12.0298
24 1 3.1633 -0.8510 -12.0343
25 1 3.4535 1.4409 -12.7714
26 6 4.2497 1.1761 -4.9951
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8899
30 1 1.6886 1.8463 0.8900
31 1 1.6887 1.8463 -0.8900
32 1 6.2024 0.9756 1.7992
33 1 6.5469 0.4707 -3.6745
34 1 6.3512 1.8623 -2.5646
35 1 6.3994 3.4202 -4.3113
36 1 7.2849 2.1204 -5.1639
37 1 5.1043 4.3115 -6.2072
38 1 3.5897 3.4260 -6.5065
39 1 4.0413 3.8815 -4.8458
40 1 6.3682 2.4497 -7.4268
41 1 6.1552 0.7673 -6.8858
42 1 3.6276 1.7931 -7.6170
43 1 1.6782 1.1921 -10.2563
44 1 3.2018 1.4259 -5.1617
45 1 4.4701 0.1834 -5.3875
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484116447.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:15:23
Heat of formation + Delta-G solvation = -31.916492 kcal
Electronic energy + Delta-G solvation = -27584.564862 eV
Core-core repulsion = 23729.023944 eV
Total energy + Delta-G solvation = -3855.540918 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.67951 -40.85139 -39.12295 -38.56153 -36.50253 -34.45897 -32.59213 -32.13773
-30.54856 -29.64363 -27.81118 -27.41424 -26.71289 -25.62637 -25.12995 -23.60633
-22.36472 -20.23313 -19.86781 -19.72745 -18.94394 -17.74240 -17.61571 -17.30463
-17.16294 -16.53331 -16.48637 -16.10924 -15.76801 -15.53655 -15.42409 -15.19996
-15.00643 -14.88165 -14.45928 -14.08670 -13.93774 -13.61144 -13.56685 -13.28498
-13.04485 -12.94427 -12.77499 -12.65806 -12.48070 -12.31942 -12.09436 -12.08396
-11.82160 -11.54488 -11.42560 -11.33709 -10.92655 -10.75559 -10.63861 -10.57463
-10.13683 -9.78739 -8.95207 -7.92034 -5.20057 -0.89764 0.07988 0.49169
1.24938 1.48429 1.49036 1.58959 1.69837 1.88866 2.57954 2.82557
3.19758 3.35031 3.42738 3.55805 3.65609 3.81962 3.85029 4.04665
4.17139 4.20614 4.29361 4.31704 4.37992 4.42699 4.48527 4.51584
4.56067 4.68120 4.76361 4.77413 4.77960 4.88355 4.93960 5.00034
5.03273 5.14990 5.29121 5.36432 5.44439 5.54135 6.07428 6.29918
6.31671 6.52267 6.86446 7.36617 8.14301 8.35159 9.31859
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015791 B = 0.002838 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1772.779466 B = 9863.889252 C =11118.647690
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.405 6.405
3 C 0.130 3.870
4 C 0.127 3.873
5 N -0.494 5.494
6 C 0.026 3.974
7 S 0.266 5.734
8 C -0.303 4.303
9 C 0.604 3.396
10 O -0.561 6.561
11 N -0.616 5.616
12 C 0.089 3.911
13 C -0.110 4.110
14 C -0.072 4.072
15 C -0.124 4.124
16 C 0.166 3.834
17 N -0.745 5.745
18 C -0.237 4.237
19 H 0.080 0.920
20 C -0.079 4.079
21 N -0.972 5.972
22 Si 0.971 3.029
23 H -0.262 1.262
24 H -0.298 1.298
25 H -0.296 1.296
26 C 0.127 3.873
27 H 0.038 0.962
28 H 0.098 0.902
29 H 0.061 0.939
30 H 0.078 0.922
31 H 0.069 0.931
32 H 0.249 0.751
33 H 0.101 0.899
34 H 0.099 0.901
35 H 0.093 0.907
36 H 0.111 0.889
37 H 0.070 0.930
38 H 0.032 0.968
39 H 0.052 0.948
40 H 0.034 0.966
41 H 0.031 0.969
42 H 0.373 0.627
43 H 0.249 0.751
44 H 0.051 0.949
45 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.913 2.016 24.798 27.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.324 6.324
3 C 0.052 3.948
4 C -0.013 4.013
5 N -0.208 5.208
6 C -0.268 4.268
7 S 0.524 5.476
8 C -0.428 4.428
9 C 0.393 3.607
10 O -0.442 6.442
11 N -0.349 5.349
12 C -0.033 4.033
13 C -0.149 4.149
14 C -0.073 4.073
15 C -0.181 4.181
16 C 0.040 3.960
17 N -0.388 5.388
18 C -0.369 4.369
19 H 0.098 0.902
20 C -0.271 4.271
21 N -0.623 5.623
22 Si 0.801 3.199
23 H -0.186 1.186
24 H -0.226 1.226
25 H -0.224 1.224
26 C 0.005 3.995
27 H 0.056 0.944
28 H 0.117 0.883
29 H 0.080 0.920
30 H 0.096 0.904
31 H 0.087 0.913
32 H 0.265 0.735
33 H 0.119 0.881
34 H 0.116 0.884
35 H 0.112 0.888
36 H 0.129 0.871
37 H 0.089 0.911
38 H 0.051 0.949
39 H 0.071 0.929
40 H 0.052 0.948
41 H 0.049 0.951
42 H 0.206 0.794
43 H 0.057 0.943
44 H 0.070 0.930
45 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 12.274 1.680 24.704 27.637
hybrid contribution -2.176 -0.039 -1.165 2.468
sum 10.099 1.640 23.539 25.667
Atomic orbital electron populations
1.22896 0.78972 1.03889 1.00748 1.87835 1.21804 1.27148 1.95601
1.20925 0.86041 0.85910 1.01955 1.20284 0.97276 0.97577 0.86175
1.66133 1.06628 1.17440 1.30595 1.29764 0.94800 0.98406 1.03798
1.83710 1.00752 1.62758 1.00413 1.25447 1.00174 1.19785 0.97369
1.16623 0.84989 0.76450 0.82669 1.90809 1.15874 1.52386 1.85124
1.48879 1.09390 1.70932 1.05700 1.22966 0.78326 1.01714 1.00286
1.22612 0.97883 1.00700 0.93685 1.21576 0.96015 0.94741 0.94993
1.21699 0.99951 0.96059 1.00431 1.20924 0.89801 0.97634 0.87647
1.42670 1.05787 1.80156 1.10235 1.19692 0.93495 1.34431 0.89248
0.90184 1.25553 0.95262 1.03878 1.02419 1.69837 0.98739 1.57204
1.36546 0.85100 0.77801 0.76802 0.80237 1.18635 1.22552 1.22365
1.22268 0.99506 0.99384 0.78359 0.94358 0.88348 0.91999 0.90440
0.91271 0.73467 0.88093 0.88395 0.88815 0.87070 0.91148 0.94918
0.92928 0.94771 0.95146 0.79437 0.94265 0.93047 0.91266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.70 11.01 113.37 1.25 1.95 16
2 O -0.40 -12.30 10.69 -148.98 -1.59 -13.89 16
3 C 0.13 3.65 5.66 71.24 0.40 4.05 16
4 C 0.13 3.37 6.42 42.10 0.27 3.64 16
5 N -0.49 -10.92 10.50 -190.40 -2.00 -12.92 16
6 C 0.03 0.34 12.22 130.60 1.60 1.93 16
7 S 0.27 3.54 19.08 -56.49 -1.08 2.46 16
8 C -0.30 -7.71 6.37 23.88 0.15 -7.56 16
9 C 0.60 19.40 7.84 86.45 0.68 20.08 16
10 O -0.56 -22.70 14.63 -4.31 -0.06 -22.76 16
11 N -0.62 -17.30 3.32 -812.66 -2.69 -19.99 16
12 C 0.09 1.60 5.99 86.54 0.52 2.11 16
13 C -0.11 -2.04 6.30 31.50 0.20 -1.84 16
14 C -0.07 -2.11 0.73 -51.28 -0.04 -2.14 16
15 C -0.12 -3.90 8.07 71.98 0.58 -3.32 16
16 C 0.17 5.99 4.87 86.38 0.42 6.41 16
17 N -0.75 -36.64 5.12 -343.44 -1.76 -38.39 16
18 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16
19 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16
20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16
21 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16
22 Si 0.97 46.26 29.55 68.60 2.03 48.29 16
23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16
25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16
26 C 0.13 4.29 5.73 86.53 0.50 4.79 16
27 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16
28 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16
29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
31 H 0.07 2.17 6.20 -2.39 -0.01 2.15 16
32 H 0.25 0.72 8.06 -2.91 -0.02 0.69 16
33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
34 H 0.10 1.28 4.85 -15.80 -0.08 1.20 16
35 H 0.09 1.46 7.71 -2.39 -0.02 1.44 16
36 H 0.11 1.59 7.72 -2.39 -0.02 1.57 16
37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
38 H 0.03 1.27 6.74 -2.39 -0.02 1.25 16
39 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16
40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16
41 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16
42 H 0.37 20.08 6.18 -92.71 -0.57 19.51 16
43 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16
44 H 0.05 2.11 7.56 -2.38 -0.02 2.09 16
45 H 0.07 2.48 7.83 -2.39 -0.02 2.46 16
Total: -1.00 -79.18 376.19 1.33 -77.85
By element:
Atomic # 1 Polarization: 25.24 SS G_CDS: 0.37 Total: 25.62 kcal
Atomic # 6 Polarization: 6.10 SS G_CDS: 7.83 Total: 13.93 kcal
Atomic # 7 Polarization: -125.33 SS G_CDS: -6.17 Total: -131.50 kcal
Atomic # 8 Polarization: -35.00 SS G_CDS: -1.66 Total: -36.65 kcal
Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal
Atomic # 16 Polarization: 3.54 SS G_CDS: -1.08 Total: 2.46 kcal
Total: -79.18 1.33 -77.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484116447.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.935 kcal
(2) G-P(sol) polarization free energy of solvation -79.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds