Wall clock time and date at job start Tue Mar 31 2020 23:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00057 * 2 1 4 4 C 1.50701 * 109.46799 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90388 * 269.95929 * 4 3 2 6 6 C 1.29435 * 117.35962 * 180.02562 * 5 4 3 7 7 S 1.70952 * 110.39516 * 359.72836 * 6 5 4 8 8 C 1.35662 * 122.90288 * 90.00324 * 4 3 2 9 9 C 1.46688 * 126.12992 * 359.96050 * 8 4 3 10 10 O 1.21687 * 120.00174 * 352.82469 * 9 8 4 11 11 N 1.34783 * 119.99747 * 172.82760 * 9 8 4 12 12 C 1.48139 * 127.83912 * 353.99437 * 11 9 8 13 13 C 1.54388 * 104.61740 * 219.58689 * 12 11 9 14 14 C 1.54283 * 104.95875 * 336.13736 * 13 12 11 15 15 C 1.53000 * 110.34677 * 118.97881 * 14 13 12 16 16 C 1.53005 * 110.33826 * 241.12735 * 14 13 12 17 17 N 1.46502 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.36937 * 119.99882 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00063 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31612 * 120.00150 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99704 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47235 * 120.00240 * 22 20 18 25 25 H 1.48498 * 109.47345 * 240.00120 * 22 20 18 26 26 C 1.48145 * 127.83515 * 173.99777 * 11 9 8 27 27 H 1.09007 * 109.46799 * 60.00359 * 1 2 3 28 28 H 1.09001 * 109.47517 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47087 * 300.00325 * 1 2 3 30 30 H 1.08998 * 109.46654 * 59.99790 * 3 2 1 31 31 H 1.08994 * 109.47046 * 299.99746 * 3 2 1 32 32 H 1.08001 * 124.80264 * 179.97438 * 6 5 4 33 33 H 1.08996 * 110.40544 * 100.80122 * 12 11 9 34 34 H 1.09001 * 110.40784 * 338.37041 * 12 11 9 35 35 H 1.09000 * 110.34395 * 95.00317 * 13 12 11 36 36 H 1.08999 * 110.34355 * 217.15449 * 13 12 11 37 37 H 1.08998 * 109.47442 * 59.99293 * 15 14 13 38 38 H 1.09003 * 109.47053 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46675 * 299.99469 * 15 14 13 40 40 H 1.09001 * 109.47156 * 299.99913 * 16 14 13 41 41 H 1.08996 * 109.47068 * 60.00196 * 16 14 13 42 42 H 0.97001 * 120.00146 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99987 * 179.97438 * 21 20 18 44 44 H 1.09006 * 110.40588 * 21.62772 * 26 11 9 45 45 H 1.08997 * 110.50341 * 259.25016 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2212 1.1311 1.1003 6 6 5.5056 1.0297 0.9758 7 16 5.9424 0.9866 -0.6764 8 6 4.2477 1.1280 -1.1381 9 6 3.7249 1.1685 -2.5080 10 8 2.5243 1.1308 -2.7025 11 7 4.5745 1.2473 -3.5514 12 6 6.0447 1.4249 -3.5148 13 6 6.3492 2.3946 -4.6769 14 6 5.1656 2.2306 -5.6528 15 6 4.4217 3.5578 -5.8147 16 6 5.6617 1.7310 -7.0113 17 7 4.5239 1.5816 -7.9219 18 6 4.7257 1.1444 -9.2038 19 1 5.7236 0.9092 -9.5434 20 6 3.6476 1.0033 -10.0668 21 7 2.4315 1.2903 -9.6531 22 14 3.9228 0.4061 -11.8152 23 1 5.3702 0.1532 -12.0298 24 1 3.1633 -0.8510 -12.0343 25 1 3.4535 1.4409 -12.7714 26 6 4.2497 1.1761 -4.9951 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 6.2024 0.9756 1.7992 33 1 6.5469 0.4707 -3.6745 34 1 6.3512 1.8623 -2.5646 35 1 6.3994 3.4202 -4.3113 36 1 7.2849 2.1204 -5.1639 37 1 5.1043 4.3115 -6.2072 38 1 3.5897 3.4260 -6.5065 39 1 4.0413 3.8815 -4.8458 40 1 6.3682 2.4497 -7.4268 41 1 6.1552 0.7673 -6.8858 42 1 3.6276 1.7931 -7.6170 43 1 1.6782 1.1921 -10.2563 44 1 3.2018 1.4259 -5.1617 45 1 4.4701 0.1834 -5.3875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484116447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:23 Heat of formation + Delta-G solvation = -31.916492 kcal Electronic energy + Delta-G solvation = -27584.564862 eV Core-core repulsion = 23729.023944 eV Total energy + Delta-G solvation = -3855.540918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67951 -40.85139 -39.12295 -38.56153 -36.50253 -34.45897 -32.59213 -32.13773 -30.54856 -29.64363 -27.81118 -27.41424 -26.71289 -25.62637 -25.12995 -23.60633 -22.36472 -20.23313 -19.86781 -19.72745 -18.94394 -17.74240 -17.61571 -17.30463 -17.16294 -16.53331 -16.48637 -16.10924 -15.76801 -15.53655 -15.42409 -15.19996 -15.00643 -14.88165 -14.45928 -14.08670 -13.93774 -13.61144 -13.56685 -13.28498 -13.04485 -12.94427 -12.77499 -12.65806 -12.48070 -12.31942 -12.09436 -12.08396 -11.82160 -11.54488 -11.42560 -11.33709 -10.92655 -10.75559 -10.63861 -10.57463 -10.13683 -9.78739 -8.95207 -7.92034 -5.20057 -0.89764 0.07988 0.49169 1.24938 1.48429 1.49036 1.58959 1.69837 1.88866 2.57954 2.82557 3.19758 3.35031 3.42738 3.55805 3.65609 3.81962 3.85029 4.04665 4.17139 4.20614 4.29361 4.31704 4.37992 4.42699 4.48527 4.51584 4.56067 4.68120 4.76361 4.77413 4.77960 4.88355 4.93960 5.00034 5.03273 5.14990 5.29121 5.36432 5.44439 5.54135 6.07428 6.29918 6.31671 6.52267 6.86446 7.36617 8.14301 8.35159 9.31859 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002838 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.779466 B = 9863.889252 C =11118.647690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.405 6.405 3 C 0.130 3.870 4 C 0.127 3.873 5 N -0.494 5.494 6 C 0.026 3.974 7 S 0.266 5.734 8 C -0.303 4.303 9 C 0.604 3.396 10 O -0.561 6.561 11 N -0.616 5.616 12 C 0.089 3.911 13 C -0.110 4.110 14 C -0.072 4.072 15 C -0.124 4.124 16 C 0.166 3.834 17 N -0.745 5.745 18 C -0.237 4.237 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.298 1.298 25 H -0.296 1.296 26 C 0.127 3.873 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.249 0.751 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.051 0.949 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 2.016 24.798 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.324 6.324 3 C 0.052 3.948 4 C -0.013 4.013 5 N -0.208 5.208 6 C -0.268 4.268 7 S 0.524 5.476 8 C -0.428 4.428 9 C 0.393 3.607 10 O -0.442 6.442 11 N -0.349 5.349 12 C -0.033 4.033 13 C -0.149 4.149 14 C -0.073 4.073 15 C -0.181 4.181 16 C 0.040 3.960 17 N -0.388 5.388 18 C -0.369 4.369 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.801 3.199 23 H -0.186 1.186 24 H -0.226 1.226 25 H -0.224 1.224 26 C 0.005 3.995 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.265 0.735 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.206 0.794 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.274 1.680 24.704 27.637 hybrid contribution -2.176 -0.039 -1.165 2.468 sum 10.099 1.640 23.539 25.667 Atomic orbital electron populations 1.22896 0.78972 1.03889 1.00748 1.87835 1.21804 1.27148 1.95601 1.20925 0.86041 0.85910 1.01955 1.20284 0.97276 0.97577 0.86175 1.66133 1.06628 1.17440 1.30595 1.29764 0.94800 0.98406 1.03798 1.83710 1.00752 1.62758 1.00413 1.25447 1.00174 1.19785 0.97369 1.16623 0.84989 0.76450 0.82669 1.90809 1.15874 1.52386 1.85124 1.48879 1.09390 1.70932 1.05700 1.22966 0.78326 1.01714 1.00286 1.22612 0.97883 1.00700 0.93685 1.21576 0.96015 0.94741 0.94993 1.21699 0.99951 0.96059 1.00431 1.20924 0.89801 0.97634 0.87647 1.42670 1.05787 1.80156 1.10235 1.19692 0.93495 1.34431 0.89248 0.90184 1.25553 0.95262 1.03878 1.02419 1.69837 0.98739 1.57204 1.36546 0.85100 0.77801 0.76802 0.80237 1.18635 1.22552 1.22365 1.22268 0.99506 0.99384 0.78359 0.94358 0.88348 0.91999 0.90440 0.91271 0.73467 0.88093 0.88395 0.88815 0.87070 0.91148 0.94918 0.92928 0.94771 0.95146 0.79437 0.94265 0.93047 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -12.30 10.69 -148.98 -1.59 -13.89 16 3 C 0.13 3.65 5.66 71.24 0.40 4.05 16 4 C 0.13 3.37 6.42 42.10 0.27 3.64 16 5 N -0.49 -10.92 10.50 -190.40 -2.00 -12.92 16 6 C 0.03 0.34 12.22 130.60 1.60 1.93 16 7 S 0.27 3.54 19.08 -56.49 -1.08 2.46 16 8 C -0.30 -7.71 6.37 23.88 0.15 -7.56 16 9 C 0.60 19.40 7.84 86.45 0.68 20.08 16 10 O -0.56 -22.70 14.63 -4.31 -0.06 -22.76 16 11 N -0.62 -17.30 3.32 -812.66 -2.69 -19.99 16 12 C 0.09 1.60 5.99 86.54 0.52 2.11 16 13 C -0.11 -2.04 6.30 31.50 0.20 -1.84 16 14 C -0.07 -2.11 0.73 -51.28 -0.04 -2.14 16 15 C -0.12 -3.90 8.07 71.98 0.58 -3.32 16 16 C 0.17 5.99 4.87 86.38 0.42 6.41 16 17 N -0.75 -36.64 5.12 -343.44 -1.76 -38.39 16 18 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 21 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 22 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 C 0.13 4.29 5.73 86.53 0.50 4.79 16 27 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 2.17 6.20 -2.39 -0.01 2.15 16 32 H 0.25 0.72 8.06 -2.91 -0.02 0.69 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.28 4.85 -15.80 -0.08 1.20 16 35 H 0.09 1.46 7.71 -2.39 -0.02 1.44 16 36 H 0.11 1.59 7.72 -2.39 -0.02 1.57 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.27 6.74 -2.39 -0.02 1.25 16 39 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 42 H 0.37 20.08 6.18 -92.71 -0.57 19.51 16 43 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 44 H 0.05 2.11 7.56 -2.38 -0.02 2.09 16 45 H 0.07 2.48 7.83 -2.39 -0.02 2.46 16 Total: -1.00 -79.18 376.19 1.33 -77.85 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.37 Total: 25.62 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 7.83 Total: 13.93 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -6.17 Total: -131.50 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.66 Total: -36.65 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.08 Total: 2.46 kcal Total: -79.18 1.33 -77.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484116447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.935 kcal (2) G-P(sol) polarization free energy of solvation -79.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds