Wall clock time and date at job start Tue Mar 31 2020 23:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00046 * 2 1 4 4 C 1.50703 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.30945 * 122.90156 * 270.19219 * 4 3 2 6 6 C 1.29426 * 117.35944 * 180.34393 * 5 4 3 7 7 S 1.70948 * 110.39559 * 359.71175 * 6 5 4 8 8 C 1.35656 * 122.90314 * 89.99519 * 4 3 2 9 9 C 1.46684 * 126.13451 * 359.96920 * 8 4 3 10 10 O 1.21687 * 119.99613 * 359.70927 * 9 8 4 11 11 N 1.34775 * 120.00254 * 179.71112 * 9 8 4 12 12 C 1.47026 * 125.64519 * 0.02562 * 11 9 8 13 13 C 1.54330 * 107.26840 * 178.90227 * 12 11 9 14 14 C 1.55155 * 102.94292 * 337.81024 * 13 12 11 15 15 C 1.53001 * 111.03361 * 277.41024 * 14 13 12 16 16 C 1.52998 * 111.00688 * 153.57723 * 14 13 12 17 17 N 1.46501 * 109.47426 * 186.34979 * 16 14 13 18 18 C 1.36930 * 120.00164 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99674 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99956 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47003 * 60.00043 * 22 20 18 24 24 H 1.48500 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47332 * 299.99959 * 22 20 18 26 26 C 1.47420 * 125.65051 * 179.97438 * 11 9 8 27 27 H 1.09003 * 109.47455 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47247 * 300.00484 * 1 2 3 29 29 H 1.09008 * 109.47119 * 60.00231 * 1 2 3 30 30 H 1.08996 * 109.47264 * 59.99681 * 3 2 1 31 31 H 1.08998 * 109.46881 * 300.00072 * 3 2 1 32 32 H 1.08005 * 124.80085 * 179.72701 * 6 5 4 33 33 H 1.08998 * 109.88351 * 298.31826 * 12 11 9 34 34 H 1.08998 * 109.88379 * 59.48616 * 12 11 9 35 35 H 1.08998 * 110.71700 * 96.16950 * 13 12 11 36 36 H 1.08991 * 110.72004 * 219.44241 * 13 12 11 37 37 H 1.09001 * 109.46965 * 173.66697 * 15 14 13 38 38 H 1.08997 * 109.47448 * 293.67183 * 15 14 13 39 39 H 1.09005 * 109.46962 * 53.67224 * 15 14 13 40 40 H 1.09004 * 109.46972 * 306.34484 * 16 14 13 41 41 H 1.08998 * 109.47042 * 66.34116 * 16 14 13 42 42 H 0.97000 * 119.99512 * 359.97438 * 17 16 14 43 43 H 0.96994 * 120.00400 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36858 * 323.00625 * 26 11 9 45 45 H 1.08997 * 110.36396 * 85.21612 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2218 1.1264 1.0985 6 6 5.5065 1.0320 0.9730 7 16 5.9431 1.0028 -0.6796 8 6 4.2467 1.1284 -1.1399 9 6 3.7229 1.1693 -2.5094 10 8 2.5244 1.2583 -2.7000 11 7 4.5691 1.1083 -3.5567 12 6 6.0328 0.9993 -3.4703 13 6 6.5732 0.9335 -4.9144 14 6 5.3447 0.4395 -5.7231 15 6 5.2108 -1.0826 -5.6434 16 6 5.4230 0.9046 -7.1785 17 7 4.1812 0.5523 -7.8714 18 6 4.0208 0.8704 -9.1935 19 1 4.8097 1.3815 -9.7254 20 6 2.8444 0.5360 -9.8501 21 7 1.8832 -0.0873 -9.2020 22 14 2.6253 0.9707 -11.6536 23 1 3.6846 0.3067 -12.4549 24 1 1.2922 0.5078 -12.1159 25 1 2.7252 2.4424 -11.8237 26 6 4.1803 1.1388 -4.9784 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.2040 0.9789 1.7959 33 1 6.4402 1.8729 -2.9615 34 1 6.3058 0.0925 -2.9307 35 1 6.8868 1.9206 -5.2541 36 1 7.3945 0.2207 -4.9867 37 1 4.2819 -1.3912 -6.1230 38 1 6.0547 -1.5487 -6.1520 39 1 5.2004 -1.3922 -4.5983 40 1 5.5610 1.9855 -7.2075 41 1 6.2646 0.4176 -7.6709 42 1 3.4729 0.0929 -7.3936 43 1 1.0611 -0.3206 -9.6606 44 1 3.2502 0.5910 -5.1291 45 1 4.0732 2.1682 -5.3203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484116448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:28 Heat of formation + Delta-G solvation = -10.890291 kcal Electronic energy + Delta-G solvation = -27638.849524 eV Core-core repulsion = 23784.220371 eV Total energy + Delta-G solvation = -3854.629153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68545 -39.86484 -37.89686 -37.53405 -34.88710 -32.82939 -31.56654 -30.57484 -29.27448 -28.55755 -26.72123 -26.23921 -25.35395 -24.73415 -23.62083 -22.08799 -21.30890 -19.06591 -18.90916 -18.56835 -17.19827 -16.76207 -16.45549 -16.22623 -15.99236 -15.54045 -15.17538 -14.78717 -14.69971 -14.40157 -14.16488 -13.98726 -13.66467 -13.26719 -13.17328 -12.92120 -12.76188 -12.51578 -12.22877 -12.12819 -11.81044 -11.70828 -11.65161 -11.38394 -11.04918 -10.83052 -10.63296 -10.50410 -10.38937 -10.23181 -10.06075 -9.86396 -9.78332 -9.64042 -9.52605 -9.32122 -8.87706 -8.60260 -6.92711 -5.75409 -3.04820 -0.03597 0.89440 1.28300 2.14129 2.84664 3.00262 3.44656 3.49046 3.50373 3.68242 4.11789 4.31336 4.51290 4.57826 4.69894 4.76508 4.83451 4.89970 5.19845 5.20684 5.26643 5.32936 5.39446 5.40921 5.49936 5.58096 5.64241 5.65662 5.78448 5.79160 5.92637 6.04884 6.05383 6.13939 6.19469 6.34731 6.44085 6.59935 6.69721 6.78827 7.04983 7.28924 7.43785 7.69585 8.03432 8.42675 9.54073 10.10621 10.45016 11.47054 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.002945 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.522513 B = 9505.425553 C =10963.905124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.129 3.871 4 C 0.135 3.865 5 N -0.464 5.464 6 C 0.011 3.989 7 S 0.188 5.812 8 C -0.261 4.261 9 C 0.604 3.396 10 O -0.513 6.513 11 N -0.609 5.609 12 C 0.088 3.912 13 C -0.116 4.116 14 C -0.078 4.078 15 C -0.130 4.130 16 C 0.171 3.829 17 N -0.730 5.730 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.124 3.876 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.204 0.796 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 2.307 21.749 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.050 3.950 4 C -0.003 4.003 5 N -0.177 5.177 6 C -0.284 4.284 7 S 0.444 5.556 8 C -0.386 4.386 9 C 0.391 3.609 10 O -0.391 6.391 11 N -0.342 5.342 12 C -0.036 4.036 13 C -0.154 4.154 14 C -0.080 4.080 15 C -0.187 4.187 16 C 0.043 3.957 17 N -0.375 5.375 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.003 3.997 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.221 0.779 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.474 2.186 21.594 24.099 hybrid contribution -1.247 0.324 -0.601 1.422 sum 9.227 2.511 20.993 23.068 Atomic orbital electron populations 1.22735 0.80349 1.02864 1.00169 1.87882 1.20083 1.26349 1.95511 1.21018 0.85094 0.86332 1.02550 1.20225 0.97218 0.97555 0.85348 1.66079 1.05130 1.15272 1.31252 1.28880 0.95353 1.02130 1.02073 1.84207 1.05402 1.64549 1.01435 1.25632 0.96532 1.17280 0.99145 1.16228 0.85466 0.77585 0.81608 1.90834 1.13841 1.50082 1.84309 1.48363 1.06809 1.71975 1.07058 1.22201 0.80656 1.01362 0.99368 1.22682 0.98053 1.02822 0.91876 1.21989 0.93283 0.96351 0.96332 1.21684 1.03253 0.93257 1.00520 1.20584 0.90980 0.96719 0.87459 1.42359 1.14978 1.70796 1.09396 1.19149 1.00021 1.31462 0.86749 0.91253 1.24735 0.96657 1.01224 0.98151 1.69641 1.06834 1.45581 1.35864 0.86280 0.76853 0.77956 0.85134 1.21319 1.21718 1.21296 1.22401 0.99055 1.01564 0.76698 0.89546 0.94227 0.93354 0.91918 0.88890 0.77929 0.91038 0.91003 0.89919 0.89543 0.91151 0.92338 0.93649 0.96060 0.95698 0.78063 0.93403 0.89370 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.65 10.69 -35.23 -0.38 -6.03 16 3 C 0.13 1.77 5.74 36.01 0.21 1.98 16 4 C 0.14 1.86 6.42 -83.89 -0.54 1.32 16 5 N -0.46 -5.69 10.50 -11.53 -0.12 -5.81 16 6 C 0.01 0.09 12.22 51.75 0.63 0.72 16 7 S 0.19 1.61 18.70 -107.50 -2.01 -0.40 16 8 C -0.26 -3.48 6.40 -37.10 -0.24 -3.71 16 9 C 0.60 9.60 7.81 -12.85 -0.10 9.50 16 10 O -0.51 -9.78 14.53 5.20 0.08 -9.71 16 11 N -0.61 -8.73 3.31 -172.06 -0.57 -9.30 16 12 C 0.09 0.93 4.81 -3.06 -0.01 0.91 16 13 C -0.12 -1.25 5.92 -24.89 -0.15 -1.39 16 14 C -0.08 -1.17 0.62 -152.37 -0.09 -1.27 16 15 C -0.13 -1.97 8.42 37.16 0.31 -1.65 16 16 C 0.17 3.19 5.23 -4.04 -0.02 3.16 16 17 N -0.73 -17.78 5.17 -59.91 -0.31 -18.09 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.42 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.12 2.05 5.32 -2.54 -0.01 2.03 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.37 6.01 -51.93 -0.31 1.05 16 32 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.07 0.63 7.03 -51.93 -0.36 0.26 16 34 H 0.07 0.67 6.87 -51.93 -0.36 0.32 16 35 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 36 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.07 1.27 7.19 -51.93 -0.37 0.90 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.62 7.82 -51.93 -0.41 0.22 16 40 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.38 9.96 6.31 -40.82 -0.26 9.70 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 1.71 7.77 -51.93 -0.40 1.31 16 45 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -34.25 376.49 -7.74 -41.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.65 Total: 5.85 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 0.85 Total: 5.88 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.28 Total: -60.55 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.30 Total: -15.74 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.01 Total: -0.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.25 -7.74 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484116448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.103 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds