Wall clock time and date at job start Tue Mar 31 2020 23:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00046 * 2 1 4 4 C 1.50703 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.30945 * 122.90156 * 270.19219 * 4 3 2 6 6 C 1.29426 * 117.35944 * 180.34393 * 5 4 3 7 7 S 1.70948 * 110.39559 * 359.71175 * 6 5 4 8 8 C 1.35656 * 122.90314 * 89.99519 * 4 3 2 9 9 C 1.46684 * 126.13451 * 359.96920 * 8 4 3 10 10 O 1.21687 * 119.99613 * 359.70927 * 9 8 4 11 11 N 1.34775 * 120.00254 * 179.71112 * 9 8 4 12 12 C 1.47026 * 125.64519 * 0.02562 * 11 9 8 13 13 C 1.54330 * 107.26840 * 178.90227 * 12 11 9 14 14 C 1.55155 * 102.94292 * 337.81024 * 13 12 11 15 15 C 1.53001 * 111.03361 * 277.41024 * 14 13 12 16 16 C 1.52998 * 111.00688 * 153.57723 * 14 13 12 17 17 N 1.46501 * 109.47426 * 186.34979 * 16 14 13 18 18 C 1.36930 * 120.00164 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99674 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99956 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47003 * 60.00043 * 22 20 18 24 24 H 1.48500 * 109.47175 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47332 * 299.99959 * 22 20 18 26 26 C 1.47420 * 125.65051 * 179.97438 * 11 9 8 27 27 H 1.09003 * 109.47455 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47247 * 300.00484 * 1 2 3 29 29 H 1.09008 * 109.47119 * 60.00231 * 1 2 3 30 30 H 1.08996 * 109.47264 * 59.99681 * 3 2 1 31 31 H 1.08998 * 109.46881 * 300.00072 * 3 2 1 32 32 H 1.08005 * 124.80085 * 179.72701 * 6 5 4 33 33 H 1.08998 * 109.88351 * 298.31826 * 12 11 9 34 34 H 1.08998 * 109.88379 * 59.48616 * 12 11 9 35 35 H 1.08998 * 110.71700 * 96.16950 * 13 12 11 36 36 H 1.08991 * 110.72004 * 219.44241 * 13 12 11 37 37 H 1.09001 * 109.46965 * 173.66697 * 15 14 13 38 38 H 1.08997 * 109.47448 * 293.67183 * 15 14 13 39 39 H 1.09005 * 109.46962 * 53.67224 * 15 14 13 40 40 H 1.09004 * 109.46972 * 306.34484 * 16 14 13 41 41 H 1.08998 * 109.47042 * 66.34116 * 16 14 13 42 42 H 0.97000 * 119.99512 * 359.97438 * 17 16 14 43 43 H 0.96994 * 120.00400 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.36858 * 323.00625 * 26 11 9 45 45 H 1.08997 * 110.36396 * 85.21612 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2218 1.1264 1.0985 6 6 5.5065 1.0320 0.9730 7 16 5.9431 1.0028 -0.6796 8 6 4.2467 1.1284 -1.1399 9 6 3.7229 1.1693 -2.5094 10 8 2.5244 1.2583 -2.7000 11 7 4.5691 1.1083 -3.5567 12 6 6.0328 0.9993 -3.4703 13 6 6.5732 0.9335 -4.9144 14 6 5.3447 0.4395 -5.7231 15 6 5.2108 -1.0826 -5.6434 16 6 5.4230 0.9046 -7.1785 17 7 4.1812 0.5523 -7.8714 18 6 4.0208 0.8704 -9.1935 19 1 4.8097 1.3815 -9.7254 20 6 2.8444 0.5360 -9.8501 21 7 1.8832 -0.0873 -9.2020 22 14 2.6253 0.9707 -11.6536 23 1 3.6846 0.3067 -12.4549 24 1 1.2922 0.5078 -12.1159 25 1 2.7252 2.4424 -11.8237 26 6 4.1803 1.1388 -4.9784 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.2040 0.9789 1.7959 33 1 6.4402 1.8729 -2.9615 34 1 6.3058 0.0925 -2.9307 35 1 6.8868 1.9206 -5.2541 36 1 7.3945 0.2207 -4.9867 37 1 4.2819 -1.3912 -6.1230 38 1 6.0547 -1.5487 -6.1520 39 1 5.2004 -1.3922 -4.5983 40 1 5.5610 1.9855 -7.2075 41 1 6.2646 0.4176 -7.6709 42 1 3.4729 0.0929 -7.3936 43 1 1.0611 -0.3206 -9.6606 44 1 3.2502 0.5910 -5.1291 45 1 4.0732 2.1682 -5.3203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484116448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:27 Heat of formation + Delta-G solvation = -36.359184 kcal Electronic energy + Delta-G solvation = -27639.953938 eV Core-core repulsion = 23784.220371 eV Total energy + Delta-G solvation = -3855.733567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72418 -40.88486 -39.11492 -38.56740 -36.52666 -34.45745 -32.59886 -32.19478 -30.47346 -29.62155 -27.91873 -27.43221 -26.77528 -25.62369 -25.10329 -23.52989 -22.32588 -20.29248 -19.84580 -19.72586 -18.95837 -17.79063 -17.58669 -17.32574 -17.09767 -16.59612 -16.52447 -16.14126 -15.77009 -15.54842 -15.38981 -15.20811 -15.08534 -14.81967 -14.41987 -14.06243 -13.97445 -13.63417 -13.50648 -13.32264 -13.04921 -12.97919 -12.82379 -12.67162 -12.55175 -12.32297 -12.22171 -12.04433 -11.77604 -11.55099 -11.46979 -11.36283 -10.91387 -10.74285 -10.64278 -10.58033 -10.18321 -9.69267 -8.96347 -7.92274 -5.20802 -0.89046 0.09775 0.51533 1.25099 1.47502 1.50647 1.56690 1.72748 1.89571 2.57464 2.82858 3.18276 3.33531 3.41754 3.50449 3.62588 3.83647 3.85900 4.05333 4.12317 4.18194 4.29436 4.32195 4.35923 4.42870 4.48135 4.49580 4.55959 4.69397 4.75977 4.77007 4.83851 4.89609 4.97176 5.04471 5.06262 5.14355 5.21689 5.28968 5.45973 5.52308 6.06574 6.27354 6.29054 6.52926 6.87281 7.35647 8.13237 8.34223 9.31148 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.002945 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.522513 B = 9505.425553 C =10963.905124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.127 3.873 4 C 0.125 3.875 5 N -0.494 5.494 6 C 0.024 3.976 7 S 0.272 5.728 8 C -0.303 4.303 9 C 0.597 3.403 10 O -0.564 6.564 11 N -0.607 5.607 12 C 0.082 3.918 13 C -0.103 4.103 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.168 3.832 17 N -0.745 5.745 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.300 1.300 25 H -0.278 1.278 26 C 0.129 3.871 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.249 0.751 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.037 0.963 42 H 0.372 0.628 43 H 0.249 0.751 44 H 0.043 0.957 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.464 2.666 23.292 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.048 3.952 4 C -0.015 4.015 5 N -0.209 5.209 6 C -0.270 4.270 7 S 0.530 5.470 8 C -0.428 4.428 9 C 0.385 3.615 10 O -0.445 6.445 11 N -0.340 5.340 12 C -0.041 4.041 13 C -0.141 4.141 14 C -0.073 4.073 15 C -0.180 4.180 16 C 0.042 3.958 17 N -0.388 5.388 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.201 1.201 24 H -0.227 1.227 25 H -0.204 1.204 26 C 0.007 3.993 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.794 2.564 23.145 27.588 hybrid contribution -2.442 0.231 -0.988 2.644 sum 12.352 2.795 22.157 25.520 Atomic orbital electron populations 1.22897 0.78988 1.03894 1.00748 1.87828 1.21800 1.27230 1.95620 1.20989 0.86149 0.85893 1.02121 1.20273 0.97242 0.97728 0.86225 1.66127 1.06671 1.17384 1.30678 1.29714 0.94817 0.98649 1.03799 1.83710 1.00455 1.62621 1.00202 1.25446 1.00286 1.19736 0.97348 1.16698 0.85085 0.76757 0.82929 1.90798 1.16106 1.52265 1.85327 1.48383 1.08590 1.71392 1.05607 1.22537 0.77940 1.03598 0.99985 1.22722 0.96502 1.04332 0.90497 1.21858 0.95046 0.95958 0.94439 1.21603 1.01745 0.93488 1.01172 1.20784 0.88720 0.96996 0.89333 1.42610 1.16687 1.70598 1.08880 1.19626 0.99849 1.29779 0.88072 0.90222 1.25572 0.96790 1.02258 1.02411 1.69828 1.07261 1.47786 1.37412 0.85221 0.76361 0.77922 0.80315 1.20136 1.22657 1.20439 1.22110 0.98217 1.00128 0.78866 0.88331 0.91945 0.94436 0.90495 0.91012 0.73469 0.88313 0.89006 0.88482 0.86258 0.95279 0.90677 0.92153 0.95527 0.94500 0.79540 0.94234 0.93815 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -12.67 10.69 -148.98 -1.59 -14.26 16 3 C 0.13 3.68 5.74 71.24 0.41 4.09 16 4 C 0.13 3.42 6.42 42.09 0.27 3.69 16 5 N -0.49 -11.16 10.50 -190.40 -2.00 -13.16 16 6 C 0.02 0.31 12.22 130.60 1.60 1.91 16 7 S 0.27 3.58 18.70 -56.49 -1.06 2.53 16 8 C -0.30 -7.85 6.40 23.88 0.15 -7.70 16 9 C 0.60 19.61 7.81 86.45 0.68 20.28 16 10 O -0.56 -23.45 14.53 -4.31 -0.06 -23.51 16 11 N -0.61 -17.31 3.31 -816.51 -2.71 -20.02 16 12 C 0.08 1.44 4.81 86.73 0.42 1.85 16 13 C -0.10 -1.80 5.92 31.78 0.19 -1.61 16 14 C -0.07 -2.09 0.62 -50.79 -0.03 -2.12 16 15 C -0.12 -3.66 8.42 71.98 0.61 -3.05 16 16 C 0.17 6.15 5.23 86.38 0.45 6.61 16 17 N -0.74 -37.19 5.17 -343.45 -1.78 -38.96 16 18 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 21 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 22 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 C 0.13 4.47 5.32 86.85 0.46 4.93 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.34 6.01 -2.39 -0.01 2.33 16 32 H 0.25 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.10 1.26 7.03 -2.39 -0.02 1.24 16 34 H 0.09 1.29 6.87 -2.39 -0.02 1.27 16 35 H 0.10 1.50 8.01 -2.39 -0.02 1.48 16 36 H 0.12 1.42 8.05 -2.39 -0.02 1.40 16 37 H 0.03 1.09 7.19 -2.39 -0.02 1.07 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.59 7.82 -2.38 -0.02 1.57 16 40 H 0.03 0.97 8.11 -2.38 -0.02 0.95 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.37 20.38 6.31 -92.71 -0.58 19.80 16 43 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.04 1.88 7.77 -2.39 -0.02 1.86 16 45 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 Total: -1.00 -80.80 376.49 1.29 -79.51 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.42 Total: 25.78 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 7.75 Total: 14.24 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -6.20 Total: -132.92 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.65 Total: -37.77 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.06 Total: 2.53 kcal Total: -80.80 1.29 -79.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484116448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.152 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds