Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48495 * 109.46899 * 274.98613 * 3 2 1 5 5 H 1.48498 * 109.46856 * 34.98647 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98426 * 3 2 1 7 7 C 1.38811 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99750 * 209.58418 * 7 2 1 9 9 N 1.36932 * 120.00228 * 29.58129 * 7 2 1 10 10 C 1.46933 * 120.62957 * 25.37634 * 9 7 2 11 11 C 1.53189 * 108.77643 * 126.36675 * 10 9 7 12 12 C 1.53046 * 109.31156 * 54.63474 * 11 10 9 13 13 C 1.53041 * 109.53898 * 298.63510 * 12 11 10 14 14 C 1.52999 * 109.52297 * 181.33242 * 13 12 11 15 15 O 1.42899 * 109.47048 * 174.60470 * 14 13 12 16 16 N 1.46495 * 109.49509 * 301.41084 * 13 12 11 17 17 C 1.34769 * 120.00337 * 302.01260 * 16 13 12 18 18 O 1.21284 * 120.00060 * 355.04487 * 17 16 13 19 19 C 1.50700 * 120.00012 * 175.04965 * 17 16 13 20 20 C 1.52998 * 109.47292 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47559 * 179.97438 * 20 19 17 22 22 C 1.33649 * 122.75174 * 124.72884 * 21 20 19 23 23 S 1.76194 * 107.92486 * 179.97438 * 22 21 20 24 24 C 1.70975 * 90.28201 * 0.27690 * 23 22 21 25 25 N 1.29020 * 110.17097 * 359.83964 * 24 23 22 26 26 C 1.46925 * 120.63439 * 205.35054 * 9 7 2 27 27 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58445 * 246.15698 * 10 9 7 29 29 H 1.08997 * 109.58528 * 6.43526 * 10 9 7 30 30 H 1.08997 * 109.49734 * 174.58569 * 11 10 9 31 31 H 1.08996 * 109.49764 * 294.65258 * 11 10 9 32 32 H 1.08997 * 109.45969 * 178.60946 * 12 11 10 33 33 H 1.09000 * 109.45643 * 58.65716 * 12 11 10 34 34 H 1.09001 * 109.47142 * 294.59962 * 14 13 12 35 35 H 1.08995 * 109.46915 * 54.60030 * 14 13 12 36 36 H 0.96701 * 114.00090 * 180.02562 * 15 14 13 37 37 H 0.97008 * 119.99788 * 122.00945 * 16 13 12 38 38 H 1.09000 * 109.47573 * 59.99978 * 19 17 16 39 39 H 1.09002 * 109.47336 * 299.99727 * 19 17 16 40 40 H 1.09007 * 109.47430 * 59.99298 * 20 19 17 41 41 H 1.09009 * 109.47029 * 299.99905 * 20 19 17 42 42 H 1.07997 * 126.03248 * 0.04507 * 22 21 20 43 43 H 1.08005 * 124.91501 * 179.83918 * 24 23 22 44 44 H 1.09004 * 109.58384 * 113.84025 * 26 9 7 45 45 H 1.08997 * 109.70182 * 353.49587 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 2.9847 -1.2629 0.4624 9 7 1.4595 -2.3110 -0.5844 10 6 0.4652 -2.1755 -1.6577 11 6 0.9305 -2.9927 -2.8669 12 6 1.1926 -4.4364 -2.4315 13 6 2.3016 -4.4597 -1.3772 14 6 2.5863 -5.9058 -0.9665 15 8 3.7047 -5.9370 -0.0775 16 7 3.5175 -3.8609 -1.9332 17 6 4.0725 -4.3750 -3.0486 18 8 3.6189 -5.3862 -3.5410 19 6 5.2570 -3.6933 -3.6838 20 6 5.6897 -4.4750 -4.9258 21 6 6.8737 -3.7931 -5.5614 22 6 8.0271 -4.4234 -5.8035 23 16 9.1303 -3.2688 -6.5478 24 6 7.9339 -2.0511 -6.4520 25 7 6.8590 -2.5246 -5.9182 26 6 1.8519 -3.6590 -0.1511 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4985 -2.5499 -1.3124 29 1 0.3705 -1.1263 -1.9376 30 1 0.1569 -2.9790 -3.6346 31 1 1.8477 -2.5607 -3.2669 32 1 1.5001 -5.0260 -3.2952 33 1 0.2811 -4.8594 -2.0093 34 1 1.7118 -6.3199 -0.4647 35 1 2.8106 -6.4979 -1.8536 36 1 3.9427 -6.8244 0.2241 37 1 3.9231 -3.0943 -1.4987 38 1 6.0813 -3.6585 -2.9715 39 1 4.9815 -2.6784 -3.9705 40 1 4.8655 -4.5104 -5.6383 41 1 5.9654 -5.4898 -4.6386 42 1 8.2440 -5.4582 -5.5829 43 1 8.0598 -1.0329 -6.7895 44 1 1.0013 -4.1544 0.3171 45 1 2.6731 -3.5911 0.5624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484450803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = -20.716234 kcal Electronic energy + Delta-G solvation = -28202.585404 eV Core-core repulsion = 24347.530166 eV Total energy + Delta-G solvation = -3855.055238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27510 -39.80374 -37.52352 -36.02398 -33.86516 -33.43048 -32.19870 -30.52513 -30.36883 -29.36315 -25.74347 -25.43444 -25.05353 -24.15516 -22.18041 -21.02355 -20.00161 -19.70658 -18.66717 -18.05223 -17.01753 -16.78131 -16.68291 -15.97031 -15.34772 -15.18142 -14.79141 -14.76540 -14.16782 -13.99296 -13.73084 -13.58431 -13.47155 -13.19396 -13.01678 -12.81466 -12.50581 -12.29337 -11.96722 -11.91367 -11.66502 -11.42810 -11.18758 -11.09330 -11.00887 -10.72171 -10.36677 -10.17929 -10.09398 -9.84963 -9.77843 -9.70049 -9.68970 -9.51974 -9.11014 -8.93037 -8.41842 -8.39583 -6.78382 -5.85990 -3.17874 0.50764 1.17643 1.50371 2.60157 3.09112 3.37832 3.47000 3.47047 3.67863 4.03774 4.48267 4.53684 4.81037 4.93654 5.06899 5.11270 5.21169 5.28657 5.36532 5.43775 5.53621 5.59977 5.69637 5.73510 5.79743 5.90367 5.97026 6.03324 6.05969 6.16036 6.29983 6.40404 6.48649 6.64369 6.69281 6.80916 6.87235 7.15528 7.30488 7.53040 7.53303 7.80084 7.88302 8.13742 8.36345 8.73159 9.14390 9.81059 10.37994 11.22293 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.003449 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.985685 B = 8115.702629 C = 9871.332142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.011 3.989 3 Si 0.889 3.111 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.170 3.830 11 C -0.135 4.135 12 C -0.119 4.119 13 C 0.167 3.833 14 C 0.067 3.933 15 O -0.565 6.565 16 N -0.687 5.687 17 C 0.518 3.482 18 O -0.559 6.559 19 C -0.134 4.134 20 C -0.025 4.025 21 C 0.072 3.928 22 C -0.255 4.255 23 S 0.102 5.898 24 C 0.026 3.974 25 N -0.462 5.462 26 C 0.148 3.852 27 H 0.254 0.746 28 H 0.018 0.982 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.369 0.631 37 H 0.406 0.594 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.178 0.822 43 H 0.199 0.801 44 H 0.030 0.970 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.563 -10.190 -10.695 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.044 3.956 11 C -0.174 4.174 12 C -0.158 4.158 13 C 0.079 3.921 14 C -0.012 4.012 15 O -0.369 6.369 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.440 6.440 19 C -0.174 4.174 20 C -0.065 4.065 21 C -0.060 4.060 22 C -0.393 4.393 23 S 0.354 5.646 24 C -0.272 4.272 25 N -0.176 5.176 26 C 0.021 3.979 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.214 0.786 37 H 0.242 0.758 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.195 0.805 43 H 0.216 0.784 44 H 0.047 0.953 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.639 -9.721 -11.411 20.952 hybrid contribution -0.140 0.391 0.650 0.771 sum 14.498 -9.330 -10.761 20.323 Atomic orbital electron populations 1.70222 1.05519 1.25764 1.51303 1.24860 0.94816 0.98555 1.00693 0.86491 0.79747 0.84299 0.77663 1.21445 1.21994 1.20284 1.19097 0.98526 0.87197 1.34435 0.91458 1.44098 1.48534 0.99881 1.38365 1.20738 0.90224 0.99149 0.85492 1.22056 1.00582 0.95205 0.99543 1.21732 0.96860 0.98508 0.98677 1.20939 0.84553 0.90886 0.95749 1.22663 0.88016 0.97754 0.92785 1.86509 1.50855 1.32901 1.66606 1.45771 1.27143 1.33960 1.26774 1.20417 0.84304 0.84399 0.80462 1.90570 1.64371 1.25158 1.63875 1.21553 0.97124 1.01448 0.97315 1.19904 0.93275 0.97525 0.95820 1.20487 0.96297 0.88932 1.00278 1.26877 0.96796 1.05272 1.10401 1.84008 1.19985 1.03793 1.56863 1.28457 0.91638 1.04644 1.02502 1.66140 1.26222 1.12753 1.12478 1.21077 0.97971 0.86856 0.91998 0.93661 0.96379 0.90544 0.93254 0.92585 0.91044 0.92120 0.93805 0.91876 0.78581 0.75838 0.89471 0.88109 0.89327 0.89603 0.80511 0.78392 0.95263 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 11.88 55.49 0.66 -24.72 16 2 C 0.01 0.30 4.57 -17.43 -0.08 0.22 16 3 Si 0.89 21.24 29.64 -169.99 -5.04 16.20 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.95 9.51 -15.06 -0.14 -7.10 16 8 H 0.07 1.75 7.97 -52.48 -0.42 1.33 16 9 N -0.59 -14.03 2.91 -172.32 -0.50 -14.53 16 10 C 0.17 3.96 5.45 -3.71 -0.02 3.94 16 11 C -0.13 -2.64 5.93 -26.61 -0.16 -2.79 16 12 C -0.12 -2.14 4.44 -26.69 -0.12 -2.26 16 13 C 0.17 2.95 0.45 -131.70 -0.06 2.90 16 14 C 0.07 1.04 5.66 37.16 0.21 1.25 16 15 O -0.56 -8.35 13.08 -35.23 -0.46 -8.81 16 16 N -0.69 -11.72 3.94 -47.50 -0.19 -11.90 16 17 C 0.52 8.30 7.19 -10.99 -0.08 8.22 16 18 O -0.56 -9.92 12.30 5.55 0.07 -9.85 16 19 C -0.13 -1.78 5.60 -27.88 -0.16 -1.94 16 20 C -0.02 -0.30 5.00 -27.89 -0.14 -0.44 16 21 C 0.07 0.83 6.08 -84.22 -0.51 0.32 16 22 C -0.25 -2.38 11.07 29.12 0.32 -2.06 16 23 S 0.10 0.79 23.22 -107.50 -2.50 -1.70 16 24 C 0.03 0.24 12.23 51.58 0.63 0.87 16 25 N -0.46 -5.70 10.34 -11.90 -0.12 -5.82 16 26 C 0.15 3.05 5.06 -3.71 -0.02 3.03 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 2.00 6.26 -51.93 -0.33 1.67 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.14 7.48 -51.93 -0.39 0.75 16 32 H 0.07 1.30 6.24 -51.93 -0.32 0.98 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 36 H 0.37 3.70 9.12 45.56 0.42 4.11 16 37 H 0.41 7.16 8.48 -40.82 -0.35 6.82 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.42 8.08 -51.93 -0.42 1.00 16 40 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 41 H 0.09 0.97 7.99 -51.92 -0.41 0.56 16 42 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.41 7.78 -51.93 -0.40 1.01 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -31.84 373.98 -8.66 -40.50 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.89 Total: 10.85 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.32 Total: 4.16 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.15 Total: -56.98 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.39 Total: -18.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.04 Total: 16.20 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.84 -8.66 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484450803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.779 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds