Wall clock time and date at job start Tue Mar 31 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48495 * 109.46899 * 274.98613 * 3 2 1 5 5 H 1.48498 * 109.46856 * 34.98647 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98426 * 3 2 1 7 7 C 1.38811 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99750 * 209.58418 * 7 2 1 9 9 N 1.36932 * 120.00228 * 29.58129 * 7 2 1 10 10 C 1.46933 * 120.62957 * 25.37634 * 9 7 2 11 11 C 1.53189 * 108.77643 * 126.36675 * 10 9 7 12 12 C 1.53046 * 109.31156 * 54.63474 * 11 10 9 13 13 C 1.53041 * 109.53898 * 298.63510 * 12 11 10 14 14 C 1.52999 * 109.52297 * 181.33242 * 13 12 11 15 15 O 1.42899 * 109.47048 * 174.60470 * 14 13 12 16 16 N 1.46495 * 109.49509 * 301.41084 * 13 12 11 17 17 C 1.34769 * 120.00337 * 302.01260 * 16 13 12 18 18 O 1.21284 * 120.00060 * 355.04487 * 17 16 13 19 19 C 1.50700 * 120.00012 * 175.04965 * 17 16 13 20 20 C 1.52998 * 109.47292 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47559 * 179.97438 * 20 19 17 22 22 C 1.33649 * 122.75174 * 124.72884 * 21 20 19 23 23 S 1.76194 * 107.92486 * 179.97438 * 22 21 20 24 24 C 1.70975 * 90.28201 * 0.27690 * 23 22 21 25 25 N 1.29020 * 110.17097 * 359.83964 * 24 23 22 26 26 C 1.46925 * 120.63439 * 205.35054 * 9 7 2 27 27 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58445 * 246.15698 * 10 9 7 29 29 H 1.08997 * 109.58528 * 6.43526 * 10 9 7 30 30 H 1.08997 * 109.49734 * 174.58569 * 11 10 9 31 31 H 1.08996 * 109.49764 * 294.65258 * 11 10 9 32 32 H 1.08997 * 109.45969 * 178.60946 * 12 11 10 33 33 H 1.09000 * 109.45643 * 58.65716 * 12 11 10 34 34 H 1.09001 * 109.47142 * 294.59962 * 14 13 12 35 35 H 1.08995 * 109.46915 * 54.60030 * 14 13 12 36 36 H 0.96701 * 114.00090 * 180.02562 * 15 14 13 37 37 H 0.97008 * 119.99788 * 122.00945 * 16 13 12 38 38 H 1.09000 * 109.47573 * 59.99978 * 19 17 16 39 39 H 1.09002 * 109.47336 * 299.99727 * 19 17 16 40 40 H 1.09007 * 109.47430 * 59.99298 * 20 19 17 41 41 H 1.09009 * 109.47029 * 299.99905 * 20 19 17 42 42 H 1.07997 * 126.03248 * 0.04507 * 22 21 20 43 43 H 1.08005 * 124.91501 * 179.83918 * 24 23 22 44 44 H 1.09004 * 109.58384 * 113.84025 * 26 9 7 45 45 H 1.08997 * 109.70182 * 353.49587 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 2.9847 -1.2629 0.4624 9 7 1.4595 -2.3110 -0.5844 10 6 0.4652 -2.1755 -1.6577 11 6 0.9305 -2.9927 -2.8669 12 6 1.1926 -4.4364 -2.4315 13 6 2.3016 -4.4597 -1.3772 14 6 2.5863 -5.9058 -0.9665 15 8 3.7047 -5.9370 -0.0775 16 7 3.5175 -3.8609 -1.9332 17 6 4.0725 -4.3750 -3.0486 18 8 3.6189 -5.3862 -3.5410 19 6 5.2570 -3.6933 -3.6838 20 6 5.6897 -4.4750 -4.9258 21 6 6.8737 -3.7931 -5.5614 22 6 8.0271 -4.4234 -5.8035 23 16 9.1303 -3.2688 -6.5478 24 6 7.9339 -2.0511 -6.4520 25 7 6.8590 -2.5246 -5.9182 26 6 1.8519 -3.6590 -0.1511 27 1 -0.4850 0.8400 -0.0004 28 1 -0.4985 -2.5499 -1.3124 29 1 0.3705 -1.1263 -1.9376 30 1 0.1569 -2.9790 -3.6346 31 1 1.8477 -2.5607 -3.2669 32 1 1.5001 -5.0260 -3.2952 33 1 0.2811 -4.8594 -2.0093 34 1 1.7118 -6.3199 -0.4647 35 1 2.8106 -6.4979 -1.8536 36 1 3.9427 -6.8244 0.2241 37 1 3.9231 -3.0943 -1.4987 38 1 6.0813 -3.6585 -2.9715 39 1 4.9815 -2.6784 -3.9705 40 1 4.8655 -4.5104 -5.6383 41 1 5.9654 -5.4898 -4.6386 42 1 8.2440 -5.4582 -5.5829 43 1 8.0598 -1.0329 -6.7895 44 1 1.0013 -4.1544 0.3171 45 1 2.6731 -3.5911 0.5624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484450803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:13 Heat of formation + Delta-G solvation = -43.696338 kcal Electronic energy + Delta-G solvation = -28203.581896 eV Core-core repulsion = 24347.530166 eV Total energy + Delta-G solvation = -3856.051730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48288 -40.75139 -38.97584 -37.37331 -35.47358 -34.45774 -33.81673 -32.37075 -31.65225 -30.43390 -27.29627 -26.61269 -26.55482 -25.07534 -23.94074 -22.55640 -21.43730 -20.48178 -20.08352 -18.80388 -18.66402 -18.18569 -17.98495 -16.91296 -16.82202 -16.50869 -16.35272 -15.91566 -15.72962 -15.19564 -15.13790 -14.76967 -14.68423 -14.42969 -14.26961 -14.12191 -14.00970 -13.66850 -13.45229 -13.21467 -13.00013 -12.87655 -12.81890 -12.45815 -12.41794 -12.18227 -11.98391 -11.94759 -11.78519 -11.50626 -11.20556 -11.00859 -10.56969 -10.53125 -10.38769 -10.32027 -9.76601 -9.71041 -8.76603 -7.91554 -5.25277 -0.17874 0.53321 0.81563 1.46456 1.50679 1.57837 1.81463 1.81619 2.40637 2.52090 3.20919 3.33053 3.34023 3.63856 3.78900 4.03041 4.03592 4.09356 4.18591 4.26380 4.32026 4.38036 4.45996 4.53999 4.58314 4.62837 4.68680 4.77672 4.88170 4.90260 4.98356 5.02101 5.05892 5.06716 5.18360 5.25183 5.27112 5.46219 5.61233 5.70921 5.78157 6.33812 6.78703 6.82777 6.96016 7.11404 7.41881 7.83520 8.37117 9.15256 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.003449 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.985685 B = 8115.702629 C = 9871.332142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.039 4.039 3 Si 0.950 3.050 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.598 5.598 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.170 3.830 14 C 0.077 3.923 15 O -0.578 6.578 16 N -0.691 5.691 17 C 0.518 3.482 18 O -0.574 6.574 19 C -0.123 4.123 20 C -0.017 4.017 21 C 0.047 3.953 22 C -0.257 4.257 23 S 0.158 5.842 24 C 0.014 3.986 25 N -0.504 5.504 26 C 0.152 3.848 27 H 0.249 0.751 28 H 0.000 1.000 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.391 0.609 37 H 0.403 0.597 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.197 0.803 43 H 0.223 0.777 44 H 0.026 0.974 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.925 -11.219 -11.435 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.236 4.236 3 Si 0.779 3.221 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.321 5.321 10 C 0.053 3.947 11 C -0.161 4.161 12 C -0.151 4.151 13 C 0.082 3.918 14 C -0.002 4.002 15 O -0.385 6.385 16 N -0.340 5.340 17 C 0.306 3.694 18 O -0.456 6.456 19 C -0.163 4.163 20 C -0.057 4.057 21 C -0.084 4.084 22 C -0.397 4.397 23 S 0.410 5.590 24 C -0.283 4.283 25 N -0.218 5.218 26 C 0.026 3.974 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.240 0.760 37 H 0.237 0.763 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.214 0.786 43 H 0.239 0.761 44 H 0.044 0.956 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.042 -10.789 -12.154 23.549 hybrid contribution -0.792 0.655 0.881 1.354 sum 16.249 -10.134 -11.273 22.222 Atomic orbital electron populations 1.70324 1.06885 1.26010 1.53485 1.25535 0.95427 1.01289 1.01365 0.85512 0.78902 0.80509 0.77177 1.21702 1.22652 1.19003 1.19392 0.98438 0.88125 1.33407 0.91251 1.44259 1.48463 1.00745 1.38596 1.20546 0.89639 0.97769 0.86774 1.21878 1.00479 0.95658 0.98061 1.21668 0.97419 0.97077 0.98926 1.20800 0.84872 0.91894 0.94248 1.22456 0.88943 0.95697 0.93099 1.86453 1.50514 1.35144 1.66373 1.45802 1.26995 1.33935 1.27261 1.20808 0.84618 0.84125 0.79848 1.90557 1.64976 1.25916 1.64120 1.21475 0.96224 1.00664 0.97971 1.19767 0.93326 0.97843 0.94766 1.20389 0.96803 0.89265 1.01962 1.27194 0.96597 1.06531 1.09336 1.83817 1.18046 1.01933 1.55192 1.28905 0.91557 1.06159 1.01713 1.66125 1.28063 1.13492 1.14169 1.21097 0.97470 0.85512 0.93289 0.94159 0.98179 0.93745 0.91716 0.93368 0.90686 0.91314 0.92370 0.92107 0.76002 0.76271 0.88206 0.89095 0.91067 0.88820 0.78584 0.76104 0.95603 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 11.88 21.65 0.26 -53.95 16 2 C -0.04 -2.15 4.57 84.86 0.39 -1.76 16 3 Si 0.95 44.29 29.64 68.60 2.03 46.32 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.26 -14.03 9.51 84.03 0.80 -13.23 16 8 H 0.07 3.60 7.97 -2.91 -0.02 3.58 16 9 N -0.60 -28.88 2.91 -699.09 -2.04 -30.92 16 10 C 0.18 8.51 5.45 86.36 0.47 8.98 16 11 C -0.12 -4.74 5.93 30.67 0.18 -4.56 16 12 C -0.11 -3.92 4.44 30.62 0.14 -3.78 16 13 C 0.17 5.84 0.45 3.68 0.00 5.85 16 14 C 0.08 2.25 5.66 71.98 0.41 2.66 16 15 O -0.58 -15.84 13.08 -148.98 -1.95 -17.79 16 16 N -0.69 -23.03 3.94 -422.59 -1.67 -24.69 16 17 C 0.52 16.15 7.19 87.66 0.63 16.78 16 18 O -0.57 -19.68 12.30 -3.04 -0.04 -19.72 16 19 C -0.12 -3.20 5.60 29.85 0.17 -3.03 16 20 C -0.02 -0.39 5.00 29.85 0.15 -0.24 16 21 C 0.05 1.04 6.08 41.52 0.25 1.29 16 22 C -0.26 -4.27 11.07 66.78 0.74 -3.53 16 23 S 0.16 2.05 23.22 -56.49 -1.31 0.74 16 24 C 0.01 0.24 12.23 130.66 1.60 1.83 16 25 N -0.50 -11.98 10.34 -191.55 -1.98 -13.97 16 26 C 0.15 6.23 5.06 86.36 0.44 6.66 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 28 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.04 2.39 6.26 -2.39 -0.01 2.38 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.95 7.48 -2.39 -0.02 1.93 16 32 H 0.07 2.62 6.24 -2.39 -0.01 2.60 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.84 6.33 -2.39 -0.02 1.82 16 36 H 0.39 6.82 9.12 -74.06 -0.68 6.15 16 37 H 0.40 14.02 8.48 -92.70 -0.79 13.23 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.09 2.57 8.08 -2.39 -0.02 2.55 16 40 H 0.07 1.89 8.10 -2.38 -0.02 1.87 16 41 H 0.09 2.00 7.99 -2.38 -0.02 1.98 16 42 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 2.52 7.78 -2.39 -0.02 2.51 16 Total: -1.00 -68.56 373.98 -0.77 -69.33 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.44 Total: 30.72 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.36 Total: 13.92 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.42 Total: -123.53 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.99 Total: -37.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.31 Total: 0.74 kcal Total: -68.56 -0.77 -69.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484450803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.634 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds