Wall clock time and date at job start Tue Mar 31 2020 23:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 124.52023 * 2 1 4 4 C 1.37476 * 115.10156 * 180.02562 * 3 2 1 5 5 C 1.36655 * 113.29394 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45546 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00292 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99952 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47434 * 324.99896 * 9 8 6 11 11 C 1.53002 * 109.47141 * 85.00350 * 9 8 6 12 12 C 1.53001 * 109.46953 * 205.00156 * 9 8 6 13 13 H 1.09002 * 109.47287 * 299.99827 * 12 9 8 14 14 C 1.52992 * 109.47365 * 60.00272 * 12 9 8 15 15 N 1.46903 * 109.47001 * 180.02562 * 12 9 8 16 16 C 1.46900 * 111.00411 * 154.99975 * 15 12 9 17 17 C 1.50697 * 109.47223 * 179.97438 * 16 15 12 18 18 O 1.21289 * 120.00212 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99888 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99966 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00144 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00018 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00064 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00060 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47550 * 89.99322 * 24 22 20 26 26 H 1.48495 * 109.47272 * 209.99793 * 24 22 20 27 27 H 1.48509 * 109.46950 * 329.99758 * 24 22 20 28 28 S 1.70618 * 124.52386 * 179.69971 * 2 1 3 29 29 H 1.09002 * 109.47152 * 89.99992 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00092 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00073 * 1 2 3 32 32 H 1.08000 * 122.45199 * 359.97438 * 3 2 1 33 33 H 1.07992 * 123.35651 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00016 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47032 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.46697 * 300.00083 * 11 9 8 37 37 H 1.09001 * 109.47328 * 59.99481 * 11 9 8 38 38 H 1.09004 * 109.47255 * 299.99528 * 14 12 9 39 39 H 1.09002 * 109.47282 * 59.99552 * 14 12 9 40 40 H 1.09001 * 109.47630 * 180.02562 * 14 12 9 41 41 H 1.00903 * 110.99722 * 278.95024 * 15 12 9 42 42 H 1.09001 * 109.47113 * 299.99890 * 16 15 12 43 43 H 1.09005 * 109.46905 * 59.99337 * 16 15 12 44 44 H 0.97000 * 120.00058 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3123 -0.9882 -0.0004 7 8 6.2659 -0.2320 -0.0010 8 7 5.5097 -2.3215 0.0002 9 6 6.8719 -2.8603 -0.0003 10 1 7.5191 -2.2116 -0.5905 11 6 7.3933 -2.9303 1.4364 12 6 6.8649 -4.2640 -0.6092 13 1 6.2178 -4.9128 -0.0190 14 6 6.3436 -4.1941 -2.0459 15 7 8.2308 -4.8046 -0.6092 16 6 8.2158 -6.2735 -0.6084 17 6 9.6313 -6.7904 -0.6090 18 8 10.5613 -6.0118 -0.6096 19 7 9.8639 -8.1179 -0.6079 20 6 11.1517 -8.5882 -0.6091 21 1 11.9798 -7.8949 -0.6104 22 6 11.3915 -9.9569 -0.6074 23 7 12.6259 -10.4077 -0.6080 24 14 9.9593 -11.1561 -0.6044 25 1 9.5783 -11.4757 -2.0036 26 1 10.3588 -12.4025 0.0969 27 1 8.8021 -10.5432 0.0960 28 16 2.4740 -1.4057 0.0074 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.8429 2.0965 -0.0004 33 1 4.3550 1.6702 -0.0002 34 1 4.7497 -2.9243 0.0010 35 1 8.4071 -3.3308 1.4360 36 1 7.3982 -1.9303 1.8702 37 1 6.7461 -3.5791 2.0266 38 1 5.3300 -3.7932 -2.0456 39 1 6.9908 -3.5452 -2.6361 40 1 6.3382 -5.1941 -2.4796 41 1 8.7605 -4.4489 -1.3909 42 1 7.6984 -6.6310 0.2819 43 1 7.6979 -6.6320 -1.4981 44 1 9.1202 -8.7407 -0.6071 45 1 12.7934 -11.3631 -0.6072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485116251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:30 Heat of formation + Delta-G solvation = -40.879389 kcal Electronic energy + Delta-G solvation = -26104.219948 eV Core-core repulsion = 22248.290370 eV Total energy + Delta-G solvation = -3855.929578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19085 -38.72337 -38.22191 -37.17895 -34.60947 -33.87636 -32.60042 -31.68936 -30.92701 -29.70278 -27.59130 -26.47628 -24.34414 -24.01351 -23.27224 -21.66555 -20.85271 -19.59639 -19.32961 -18.40131 -18.28103 -16.68107 -16.25580 -15.94340 -15.48232 -15.33564 -15.19004 -14.84061 -14.46712 -14.30945 -14.01843 -13.96005 -13.71696 -13.52547 -13.34641 -13.06863 -12.84259 -12.59522 -12.55255 -12.36953 -12.30885 -12.12791 -12.03965 -11.65105 -11.62583 -11.39079 -11.34360 -11.17135 -10.75910 -10.60720 -10.25778 -9.98097 -9.58000 -9.39222 -9.04653 -9.01791 -8.60558 -8.20888 -8.15282 -6.31452 -3.82946 0.09486 1.00618 1.42156 1.99568 2.81517 2.96403 3.01369 3.05343 3.14102 3.73155 4.08512 4.12971 4.26115 4.44216 4.62939 4.67409 4.77026 4.89257 4.94411 4.94935 5.06841 5.13392 5.21096 5.36783 5.38652 5.42921 5.54288 5.56223 5.59895 5.68875 5.72388 5.79872 5.88079 5.91864 5.93798 5.97542 6.05006 6.30489 6.51516 7.02758 7.20861 7.51684 7.57542 7.93183 8.14146 8.59078 8.94654 9.41840 9.81954 10.81671 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025802 B = 0.001890 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.937947 B =14813.238565 C =15543.481127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.195 4.195 3 C -0.156 4.156 4 C -0.051 4.051 5 C -0.267 4.267 6 C 0.592 3.408 7 O -0.526 6.526 8 N -0.720 5.720 9 C 0.154 3.846 10 H 0.093 0.907 11 C -0.153 4.153 12 C 0.077 3.923 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.449 3.551 18 O -0.563 6.563 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 S 0.196 5.804 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.355 0.645 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.204 17.411 0.451 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C -0.187 4.187 4 C -0.084 4.084 5 C -0.387 4.387 6 C 0.377 3.623 7 O -0.403 6.403 8 N -0.371 5.371 9 C 0.050 3.950 10 H 0.111 0.889 11 C -0.212 4.212 12 C -0.034 4.034 13 H 0.100 0.900 14 C -0.244 4.244 15 N -0.289 5.289 16 C -0.083 4.083 17 C 0.235 3.765 18 O -0.444 6.444 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 S 0.463 5.537 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.228 0.772 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.175 0.825 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.919 16.763 1.142 32.585 hybrid contribution -1.505 -0.076 -0.918 1.764 sum -29.424 16.687 0.224 33.827 Atomic orbital electron populations 1.20415 0.87321 1.03598 1.03190 1.24248 1.01591 0.97721 1.07880 1.19990 0.92642 0.99662 1.06381 1.20781 0.96204 0.95276 0.96156 1.24631 0.96849 0.98097 1.19148 1.16892 0.86671 0.82308 0.76407 1.90854 1.41720 1.57942 1.49817 1.45949 1.09561 1.06099 1.75499 1.20932 0.81656 0.94114 0.98300 0.88934 1.22053 1.03216 1.01350 0.94535 1.21757 0.91244 0.95151 0.95282 0.90026 1.22550 1.01843 1.02332 0.97707 1.59985 1.11083 1.06237 1.51635 1.21729 0.96765 0.88525 1.01280 1.19688 0.89936 0.82802 0.84066 1.90578 1.44786 1.55506 1.53574 1.42200 1.08168 1.05501 1.67143 1.19436 0.83320 0.92562 1.48053 0.86261 1.25042 0.96599 0.96860 0.97684 1.69618 1.18462 1.14665 1.49344 0.86670 0.82135 0.81744 0.78813 1.19693 1.20180 1.19495 1.82953 0.94433 1.07810 1.68519 0.90288 0.90192 0.91004 0.83771 0.82873 0.77225 0.89277 0.92947 0.93140 0.92258 0.91960 0.92153 0.82463 0.89437 0.93644 0.79733 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 10.31 36.01 0.37 0.06 16 2 C -0.19 -1.22 6.28 -35.86 -0.23 -1.45 16 3 C -0.16 -1.08 9.99 -41.41 -0.41 -1.49 16 4 C -0.05 -0.45 10.01 -40.43 -0.40 -0.86 16 5 C -0.27 -2.57 6.45 -36.79 -0.24 -2.80 16 6 C 0.59 7.04 7.75 -12.90 -0.10 6.94 16 7 O -0.53 -8.21 16.50 5.19 0.09 -8.12 16 8 N -0.72 -7.13 4.38 -55.15 -0.24 -7.38 16 9 C 0.15 1.78 2.34 -67.93 -0.16 1.62 16 10 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 11 C -0.15 -1.91 9.33 37.16 0.35 -1.57 16 12 C 0.08 0.83 2.22 -67.71 -0.15 0.68 16 13 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 14 C -0.19 -1.76 9.00 37.15 0.33 -1.43 16 15 N -0.66 -9.48 5.11 -107.99 -0.55 -10.03 16 16 C 0.05 0.77 5.97 -4.98 -0.03 0.74 16 17 C 0.45 9.95 7.82 -10.99 -0.09 9.86 16 18 O -0.56 -14.89 15.78 5.55 0.09 -14.81 16 19 N -0.59 -13.84 5.09 -10.96 -0.06 -13.89 16 20 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 24 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 S 0.20 1.30 22.10 -107.50 -2.38 -1.07 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.39 2.97 7.50 -40.82 -0.31 2.66 16 35 H 0.09 1.28 7.60 -51.93 -0.39 0.88 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 39 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.06 0.57 7.46 -51.93 -0.39 0.18 16 41 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 42 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 43 H 0.05 0.61 7.44 -51.93 -0.39 0.22 16 44 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -34.34 389.98 -8.69 -43.02 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.57 Total: 14.25 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.00 Total: 2.60 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.07 Total: -56.20 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.38 Total: -1.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.34 -8.69 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485116251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.145 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds