Wall clock time and date at job start Tue Mar 31 2020 23:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 124.52023 * 2 1 4 4 C 1.37476 * 115.10156 * 180.02562 * 3 2 1 5 5 C 1.36655 * 113.29394 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45546 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00292 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99952 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47434 * 324.99896 * 9 8 6 11 11 C 1.53002 * 109.47141 * 85.00350 * 9 8 6 12 12 C 1.53001 * 109.46953 * 205.00156 * 9 8 6 13 13 H 1.09002 * 109.47287 * 299.99827 * 12 9 8 14 14 C 1.52992 * 109.47365 * 60.00272 * 12 9 8 15 15 N 1.46903 * 109.47001 * 180.02562 * 12 9 8 16 16 C 1.46900 * 111.00411 * 154.99975 * 15 12 9 17 17 C 1.50697 * 109.47223 * 179.97438 * 16 15 12 18 18 O 1.21289 * 120.00212 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99888 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99966 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00144 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00018 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00064 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00060 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47550 * 89.99322 * 24 22 20 26 26 H 1.48495 * 109.47272 * 209.99793 * 24 22 20 27 27 H 1.48509 * 109.46950 * 329.99758 * 24 22 20 28 28 S 1.70618 * 124.52386 * 179.69971 * 2 1 3 29 29 H 1.09002 * 109.47152 * 89.99992 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00092 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00073 * 1 2 3 32 32 H 1.08000 * 122.45199 * 359.97438 * 3 2 1 33 33 H 1.07992 * 123.35651 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00016 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47032 * 180.02562 * 11 9 8 36 36 H 1.09003 * 109.46697 * 300.00083 * 11 9 8 37 37 H 1.09001 * 109.47328 * 59.99481 * 11 9 8 38 38 H 1.09004 * 109.47255 * 299.99528 * 14 12 9 39 39 H 1.09002 * 109.47282 * 59.99552 * 14 12 9 40 40 H 1.09001 * 109.47630 * 180.02562 * 14 12 9 41 41 H 1.00903 * 110.99722 * 278.95024 * 15 12 9 42 42 H 1.09001 * 109.47113 * 299.99890 * 16 15 12 43 43 H 1.09005 * 109.46905 * 59.99337 * 16 15 12 44 44 H 0.97000 * 120.00058 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3123 -0.9882 -0.0004 7 8 6.2659 -0.2320 -0.0010 8 7 5.5097 -2.3215 0.0002 9 6 6.8719 -2.8603 -0.0003 10 1 7.5191 -2.2116 -0.5905 11 6 7.3933 -2.9303 1.4364 12 6 6.8649 -4.2640 -0.6092 13 1 6.2178 -4.9128 -0.0190 14 6 6.3436 -4.1941 -2.0459 15 7 8.2308 -4.8046 -0.6092 16 6 8.2158 -6.2735 -0.6084 17 6 9.6313 -6.7904 -0.6090 18 8 10.5613 -6.0118 -0.6096 19 7 9.8639 -8.1179 -0.6079 20 6 11.1517 -8.5882 -0.6091 21 1 11.9798 -7.8949 -0.6104 22 6 11.3915 -9.9569 -0.6074 23 7 12.6259 -10.4077 -0.6080 24 14 9.9593 -11.1561 -0.6044 25 1 9.5783 -11.4757 -2.0036 26 1 10.3588 -12.4025 0.0969 27 1 8.8021 -10.5432 0.0960 28 16 2.4740 -1.4057 0.0074 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.8429 2.0965 -0.0004 33 1 4.3550 1.6702 -0.0002 34 1 4.7497 -2.9243 0.0010 35 1 8.4071 -3.3308 1.4360 36 1 7.3982 -1.9303 1.8702 37 1 6.7461 -3.5791 2.0266 38 1 5.3300 -3.7932 -2.0456 39 1 6.9908 -3.5452 -2.6361 40 1 6.3382 -5.1941 -2.4796 41 1 8.7605 -4.4489 -1.3909 42 1 7.6984 -6.6310 0.2819 43 1 7.6979 -6.6320 -1.4981 44 1 9.1202 -8.7407 -0.6071 45 1 12.7934 -11.3631 -0.6072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485116251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:29 Heat of formation + Delta-G solvation = -67.251888 kcal Electronic energy + Delta-G solvation = -26105.363546 eV Core-core repulsion = 22248.290370 eV Total energy + Delta-G solvation = -3857.073175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10654 -40.30750 -38.99945 -38.22003 -36.08531 -35.46310 -33.73835 -33.16720 -31.90450 -30.65464 -28.31372 -27.89089 -25.67212 -24.93903 -24.12996 -22.47195 -21.82180 -21.25508 -20.39105 -20.09797 -19.01682 -17.75202 -17.48294 -16.88861 -16.85893 -16.47230 -16.26510 -16.03096 -15.53786 -15.24274 -15.07023 -14.86882 -14.80979 -14.62452 -14.36357 -14.27375 -13.96894 -13.89647 -13.46528 -13.33871 -13.18951 -13.02305 -12.92186 -12.73456 -12.73032 -12.56616 -12.39698 -12.25228 -11.96796 -11.91166 -11.69096 -11.49278 -11.22220 -10.44853 -10.29713 -10.23190 -9.62584 -9.53437 -9.29561 -8.39625 -6.00725 -0.52910 0.45101 0.86760 1.31501 1.37252 1.37332 1.46428 1.93824 1.98674 2.14651 2.24886 2.80313 3.17048 3.45250 3.59593 3.80461 3.89470 4.00391 4.17089 4.21030 4.26889 4.39687 4.44764 4.46535 4.54690 4.60278 4.69174 4.74576 4.78283 4.83045 4.94862 4.99644 5.08495 5.10263 5.21587 5.22351 5.32823 5.40952 5.46347 5.54860 5.92099 6.05460 6.33017 6.40894 6.61494 6.90278 7.08518 7.41942 7.99446 8.78147 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025802 B = 0.001890 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.937947 B =14813.238565 C =15543.481127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.188 4.188 3 C -0.169 4.169 4 C -0.056 4.056 5 C -0.305 4.305 6 C 0.589 3.411 7 O -0.576 6.576 8 N -0.705 5.705 9 C 0.160 3.840 10 H 0.065 0.935 11 C -0.147 4.147 12 C 0.086 3.914 13 H 0.108 0.892 14 C -0.181 4.181 15 N -0.676 5.676 16 C 0.066 3.934 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.053 0.947 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.228 1.228 28 S 0.241 5.759 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.346 0.654 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.082 15.933 0.429 38.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.308 4.308 3 C -0.199 4.199 4 C -0.091 4.091 5 C -0.425 4.425 6 C 0.377 3.623 7 O -0.457 6.457 8 N -0.356 5.356 9 C 0.055 3.945 10 H 0.083 0.917 11 C -0.205 4.205 12 C -0.025 4.025 13 H 0.126 0.874 14 C -0.240 4.240 15 N -0.308 5.308 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.151 1.151 28 S 0.509 5.491 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.161 0.839 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.165 0.835 42 H 0.137 0.863 43 H 0.100 0.900 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -33.861 15.275 1.124 37.164 hybrid contribution 0.344 0.536 -0.901 1.103 sum -33.517 15.811 0.223 37.060 Atomic orbital electron populations 1.20574 0.85104 1.04802 1.04304 1.24728 1.03100 0.97372 1.05566 1.20131 0.91686 1.01016 1.07034 1.20929 0.97233 0.95044 0.95848 1.24498 0.97034 0.99131 1.21847 1.17265 0.87239 0.82417 0.75382 1.90822 1.43570 1.59104 1.52243 1.45720 1.09354 1.05819 1.74721 1.20727 0.82110 0.94432 0.97263 0.91709 1.21956 1.02407 1.00651 0.95475 1.21749 0.89648 0.94431 0.96646 0.87354 1.22498 1.02449 1.02749 0.96255 1.59930 1.13357 1.05841 1.51696 1.21657 0.91714 0.88942 1.04343 1.21050 0.92479 0.81907 0.81016 1.90561 1.47566 1.56806 1.55027 1.42010 1.06819 1.06533 1.67884 1.19001 0.84111 0.92386 1.50338 0.92904 1.26158 1.00574 0.98765 0.96079 1.69811 1.21896 1.15578 1.50381 0.85340 0.78319 0.77754 0.79933 1.18112 1.20230 1.15110 1.82680 0.92078 1.06921 1.67443 0.89066 0.88955 0.89893 0.81901 0.83924 0.75412 0.91486 0.94470 0.91296 0.90383 0.93369 0.91166 0.83527 0.86349 0.90023 0.77394 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 10.31 71.24 0.73 0.42 16 2 C -0.19 -1.82 6.28 24.68 0.15 -1.66 16 3 C -0.17 -2.03 9.99 21.08 0.21 -1.82 16 4 C -0.06 -0.99 10.01 21.72 0.22 -0.77 16 5 C -0.31 -5.67 6.45 24.08 0.16 -5.51 16 6 C 0.59 14.17 7.75 86.42 0.67 14.84 16 7 O -0.58 -19.09 16.50 -4.35 -0.07 -19.16 16 8 N -0.70 -13.14 4.38 -446.60 -1.96 -15.10 16 9 C 0.16 3.61 2.34 44.99 0.11 3.72 16 10 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 11 C -0.15 -3.66 9.33 71.98 0.67 -2.99 16 12 C 0.09 1.63 2.22 44.91 0.10 1.73 16 13 H 0.11 1.56 7.80 -2.39 -0.02 1.54 16 14 C -0.18 -2.92 9.00 71.98 0.65 -2.27 16 15 N -0.68 -18.60 5.11 -495.58 -2.53 -21.13 16 16 C 0.07 1.83 5.97 85.56 0.51 2.34 16 17 C 0.45 19.67 7.82 87.66 0.69 20.35 16 18 O -0.62 -33.97 15.78 -3.06 -0.05 -34.01 16 19 N -0.59 -27.25 5.09 -306.99 -1.56 -28.81 16 20 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 21 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 23 N -0.94 -56.55 13.96 21.66 0.30 -56.25 16 24 Si 0.97 38.12 27.74 68.60 1.90 40.02 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 28 S 0.24 2.55 22.10 -56.49 -1.25 1.30 16 29 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.08 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.41 5.03 7.50 -92.71 -0.70 4.34 16 35 H 0.07 1.98 7.60 -2.39 -0.02 1.96 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 0.97 7.45 -2.38 -0.02 0.96 16 39 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 40 H 0.07 1.03 7.46 -2.39 -0.02 1.01 16 41 H 0.35 10.68 8.17 -89.69 -0.73 9.95 16 42 H 0.12 2.67 8.05 -2.39 -0.02 2.65 16 43 H 0.08 1.77 7.44 -2.38 -0.02 1.76 16 44 H 0.39 14.64 5.76 -92.71 -0.53 14.10 16 45 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -83.49 389.98 -0.01 -83.50 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.98 Total: 40.14 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.18 Total: 9.50 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.75 Total: -121.29 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.12 Total: -53.17 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.25 Total: 1.30 kcal Total: -83.49 -0.01 -83.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485116251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.246 kcal (2) G-P(sol) polarization free energy of solvation -83.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds