Wall clock time and date at job start Tue Mar 31 2020 23:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33823 * 124.51697 * 2 1 4 4 C 1.37475 * 115.09701 * 180.02562 * 3 2 1 5 5 C 1.36646 * 113.29989 * 0.02562 * 4 3 2 6 6 C 1.46576 * 125.46009 * 180.02562 * 5 4 3 7 7 O 1.21709 * 119.99710 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00266 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00114 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46764 * 35.00505 * 9 8 6 11 11 C 1.53000 * 109.47214 * 275.00487 * 9 8 6 12 12 C 1.52995 * 109.47136 * 155.00115 * 9 8 6 13 13 H 1.08999 * 109.47138 * 59.99751 * 12 9 8 14 14 C 1.53000 * 109.47013 * 300.00163 * 12 9 8 15 15 N 1.46894 * 109.47347 * 180.02562 * 12 9 8 16 16 C 1.46899 * 111.00347 * 205.00298 * 15 12 9 17 17 C 1.50692 * 109.47455 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99773 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00056 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99978 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00039 * 180.02562 * 20 19 17 23 23 N 1.31420 * 119.99909 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46949 * 59.99955 * 24 22 20 26 26 H 1.48504 * 109.47188 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47467 * 299.99844 * 24 22 20 28 28 S 1.70609 * 124.52648 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46955 * 90.00037 * 1 2 3 30 30 H 1.09005 * 109.46651 * 209.99637 * 1 2 3 31 31 H 1.08998 * 109.47220 * 329.99544 * 1 2 3 32 32 H 1.07995 * 122.45105 * 0.29519 * 3 2 1 33 33 H 1.07999 * 123.34447 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99880 * 359.97438 * 8 6 5 35 35 H 1.09005 * 109.46983 * 300.00085 * 11 9 8 36 36 H 1.08995 * 109.47273 * 59.99523 * 11 9 8 37 37 H 1.09002 * 109.46837 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.47489 * 60.00118 * 14 12 9 39 39 H 1.09003 * 109.46963 * 179.97438 * 14 12 9 40 40 H 1.09000 * 109.47540 * 300.00011 * 14 12 9 41 41 H 1.00897 * 111.00369 * 81.04564 * 15 12 9 42 42 H 1.09002 * 109.46691 * 299.99765 * 16 15 12 43 43 H 1.08998 * 109.47417 * 59.99088 * 16 15 12 44 44 H 0.97001 * 120.00212 * 0.02562 * 19 17 16 45 45 H 0.96996 * 119.99792 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 -0.0006 5 6 3.9493 -0.4489 -0.0016 6 6 5.3123 -0.9880 -0.0018 7 8 6.2659 -0.2317 -0.0016 8 7 5.5098 -2.3213 -0.0023 9 6 6.8721 -2.8601 -0.0031 10 1 7.5198 -2.2111 0.5863 11 6 7.3920 -2.9302 -1.4404 12 6 6.8658 -4.2635 0.6060 13 1 6.2181 -4.9125 0.0167 14 6 6.3460 -4.1933 2.0432 15 7 8.2319 -4.8036 0.6058 16 6 8.2174 -6.2725 0.6052 17 6 9.6330 -6.7889 0.6056 18 8 10.5628 -6.0099 0.6058 19 7 9.8661 -8.1164 0.6057 20 6 11.1541 -8.5862 0.6056 21 1 11.9820 -7.8926 0.6049 22 6 11.3945 -9.9547 0.6052 23 7 10.3871 -10.7988 0.6044 24 14 13.1493 -10.5949 0.6057 25 1 13.8537 -10.1073 1.8187 26 1 13.1346 -12.0798 0.6045 27 1 13.8548 -10.1065 -0.6063 28 16 2.4740 -1.4056 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.8428 2.0965 0.0047 33 1 4.3548 1.6705 -0.0010 34 1 4.7498 -2.9241 -0.0022 35 1 6.7442 -3.5791 -2.0298 36 1 7.3964 -1.9303 -1.8744 37 1 8.4055 -3.3315 -1.4410 38 1 5.3324 -3.7925 2.0439 39 1 6.3411 -5.1933 2.4771 40 1 6.9936 -3.5444 2.6327 41 1 8.7617 -4.4475 1.3872 42 1 7.7000 -6.6310 1.4951 43 1 7.6998 -6.6304 -0.2848 44 1 9.1226 -8.7394 0.6052 45 1 10.5549 -11.7541 0.6038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485116253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:38 Heat of formation + Delta-G solvation = -48.180114 kcal Electronic energy + Delta-G solvation = -26040.986979 eV Core-core repulsion = 22184.740818 eV Total energy + Delta-G solvation = -3856.246161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14704 -38.59470 -38.13353 -37.08371 -34.54021 -33.81208 -32.56664 -31.28698 -30.79958 -29.61892 -27.55102 -26.29600 -24.33202 -24.09772 -23.28867 -21.62710 -20.79912 -19.54756 -19.19132 -18.28138 -17.90453 -16.65423 -16.19660 -15.94389 -15.39425 -15.24276 -15.13903 -14.56971 -14.41715 -14.30313 -13.92902 -13.86693 -13.77371 -13.52146 -13.47631 -13.06767 -12.81762 -12.51524 -12.34886 -12.27267 -12.18890 -12.07884 -11.59218 -11.54948 -11.46143 -11.35501 -11.27849 -11.01436 -10.69511 -10.44009 -10.23010 -10.20240 -9.49912 -9.34943 -9.01540 -8.98533 -8.47112 -8.06972 -7.95883 -6.41738 -3.82525 0.12577 1.03777 1.45408 2.02464 2.86190 2.99793 3.20570 3.26177 3.30866 3.90680 4.11227 4.28554 4.35654 4.49103 4.67903 4.71492 4.91191 4.92191 4.97199 5.11934 5.16014 5.17766 5.26470 5.39568 5.44222 5.49648 5.59056 5.64911 5.68575 5.75377 5.82381 5.88811 5.96649 5.99146 6.04790 6.09352 6.24104 6.36606 6.55948 7.15070 7.25887 7.55227 7.61509 7.96918 8.06093 8.61136 9.17911 9.54096 10.05588 10.75902 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.001772 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.533570 B =15794.140237 C =16339.064190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.195 4.195 3 C -0.156 4.156 4 C -0.052 4.052 5 C -0.267 4.267 6 C 0.591 3.409 7 O -0.526 6.526 8 N -0.719 5.719 9 C 0.154 3.846 10 H 0.092 0.908 11 C -0.153 4.153 12 C 0.077 3.923 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.657 5.657 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 S 0.197 5.803 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.394 0.606 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.353 0.647 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.885 17.915 -0.484 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.315 4.315 3 C -0.187 4.187 4 C -0.085 4.085 5 C -0.387 4.387 6 C 0.377 3.623 7 O -0.404 6.404 8 N -0.371 5.371 9 C 0.050 3.950 10 H 0.110 0.890 11 C -0.211 4.211 12 C -0.034 4.034 13 H 0.100 0.900 14 C -0.244 4.244 15 N -0.289 5.289 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 S 0.464 5.536 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.228 0.772 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.174 0.826 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.765 17.226 -1.162 28.571 hybrid contribution -0.134 0.265 0.918 0.965 sum -22.899 17.490 -0.244 28.815 Atomic orbital electron populations 1.20413 0.87330 1.03586 1.03186 1.24250 1.01594 0.97746 1.07899 1.19986 0.92642 0.99644 1.06423 1.20772 0.96193 0.95272 0.96227 1.24635 0.96874 0.98097 1.19096 1.16895 0.86663 0.82324 0.76417 1.90852 1.41734 1.57946 1.49894 1.45957 1.09606 1.06080 1.75409 1.20937 0.81597 0.94195 0.98266 0.88999 1.22047 1.03234 1.01271 0.94566 1.21750 0.91405 0.95050 0.95227 0.90026 1.22549 1.01747 1.02351 0.97757 1.59986 1.10898 1.06543 1.51507 1.21690 0.97025 0.88097 1.01191 1.19792 0.89813 0.83278 0.84544 1.90535 1.44872 1.55886 1.55300 1.41852 1.08901 1.04864 1.64406 1.19661 0.84448 0.91159 1.47654 0.87955 1.25258 0.99579 0.95778 0.97310 1.69605 1.31008 1.03164 1.50597 0.85915 0.81905 0.77289 0.79091 1.19922 1.20998 1.19878 1.82971 0.94408 1.07752 1.68453 0.90292 0.90999 0.90213 0.83798 0.82899 0.77207 0.93125 0.93006 0.89305 0.92327 0.92098 0.92060 0.82649 0.93769 0.89570 0.77488 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.31 36.01 0.37 0.03 16 2 C -0.20 -1.28 6.28 -35.86 -0.23 -1.50 16 3 C -0.16 -1.12 10.00 -41.41 -0.41 -1.53 16 4 C -0.05 -0.47 10.01 -40.43 -0.40 -0.88 16 5 C -0.27 -2.65 6.45 -36.80 -0.24 -2.89 16 6 C 0.59 7.26 7.75 -12.90 -0.10 7.16 16 7 O -0.53 -8.39 16.50 5.18 0.09 -8.30 16 8 N -0.72 -7.47 4.38 -55.14 -0.24 -7.72 16 9 C 0.15 1.86 2.34 -67.93 -0.16 1.70 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 C -0.15 -1.98 9.33 37.16 0.35 -1.64 16 12 C 0.08 0.89 2.22 -67.72 -0.15 0.74 16 13 H 0.08 0.87 7.80 -51.93 -0.41 0.46 16 14 C -0.19 -1.90 9.00 37.16 0.33 -1.57 16 15 N -0.66 -10.03 5.11 -108.00 -0.55 -10.58 16 16 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 17 C 0.44 10.20 7.82 -10.99 -0.09 10.12 16 18 O -0.58 -15.64 15.78 5.54 0.09 -15.55 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 S 0.20 1.38 22.10 -107.50 -2.38 -1.00 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.39 3.18 7.50 -40.82 -0.31 2.87 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.32 7.60 -51.93 -0.39 0.92 16 38 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 39 H 0.06 0.63 7.45 -51.93 -0.39 0.25 16 40 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.35 5.73 8.17 -39.29 -0.32 5.41 16 42 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 43 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 393.09 15.07 5.92 5.92 Total: -1.00 -32.97 393.09 -9.04 -42.01 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -6.61 Total: 14.42 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.99 Total: 2.62 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.13 Total: -56.16 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.38 Total: -1.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.97 -9.04 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485116253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.170 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds