Wall clock time and date at job start Tue Mar 31 2020 23:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33820 * 124.52200 * 2 1 4 4 C 1.37469 * 115.10032 * 179.97438 * 3 2 1 5 5 C 1.36652 * 113.29577 * 359.97438 * 4 3 2 6 6 C 1.46583 * 125.45487 * 180.26357 * 5 4 3 7 7 O 1.21704 * 120.00092 * 359.71670 * 6 5 4 8 8 N 1.34780 * 119.99734 * 179.72100 * 6 5 4 9 9 C 1.46498 * 120.00069 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47269 * 180.02562 * 9 8 6 11 11 O 1.21276 * 120.00200 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00230 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00225 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47279 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.46947 * 64.99584 * 14 13 12 16 16 C 1.53003 * 109.47471 * 184.99601 * 14 13 12 17 17 N 1.46497 * 109.47154 * 304.99659 * 14 13 12 18 18 C 1.46499 * 120.00039 * 300.00207 * 17 14 13 19 19 C 1.36938 * 119.99716 * 119.99862 * 17 14 13 20 20 H 1.07998 * 120.00856 * 21.94530 * 19 17 14 21 21 C 1.38817 * 119.99738 * 201.94212 * 19 17 14 22 22 N 1.31620 * 119.99896 * 12.69258 * 21 19 17 23 23 Si 1.86800 * 120.00215 * 192.68726 * 21 19 17 24 24 H 1.48504 * 109.47054 * 89.99845 * 23 21 19 25 25 H 1.48497 * 109.47494 * 210.00053 * 23 21 19 26 26 H 1.48495 * 109.47027 * 330.00350 * 23 21 19 27 27 S 1.70610 * 124.52131 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47233 * 300.02162 * 1 2 3 30 30 H 1.08997 * 109.46789 * 60.01509 * 1 2 3 31 31 H 1.08000 * 122.45095 * 359.93968 * 3 2 1 32 32 H 1.07997 * 123.35290 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00004 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.47188 * 300.00292 * 9 8 6 35 35 H 1.09000 * 109.46662 * 59.99843 * 9 8 6 36 36 H 0.97000 * 119.99481 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46970 * 299.99566 * 13 12 10 38 38 H 1.09000 * 109.47697 * 59.99616 * 13 12 10 39 39 H 1.09000 * 109.47127 * 180.02562 * 16 14 13 40 40 H 1.09006 * 109.46594 * 300.00372 * 16 14 13 41 41 H 1.09000 * 109.47049 * 60.00046 * 16 14 13 42 42 H 1.08996 * 109.47504 * 94.31568 * 18 17 14 43 43 H 1.09009 * 109.46788 * 214.31301 * 18 17 14 44 44 H 1.09001 * 109.46649 * 334.30809 * 18 17 14 45 45 H 0.97000 * 120.00005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0078 7 8 6.2659 -0.2320 0.0075 8 7 5.5096 -2.3216 0.0139 9 6 6.8718 -2.8605 0.0196 10 6 6.8163 -4.3664 0.0251 11 8 5.7444 -4.9337 0.0239 12 7 7.9578 -5.0829 0.0314 13 6 7.9038 -6.5468 0.0362 14 6 9.3265 -7.1096 0.0423 15 1 9.8214 -6.8362 0.9742 16 6 9.2726 -8.6339 -0.0783 17 7 10.0753 -6.5565 -1.0888 18 6 9.6094 -6.7868 -2.4585 19 6 11.2107 -5.8242 -0.8658 20 1 11.7533 -5.9376 0.0611 21 6 11.6645 -4.9359 -1.8312 22 7 10.8871 -4.6085 -2.8416 23 14 13.3783 -4.2050 -1.6963 24 1 14.3470 -5.0811 -2.4029 25 1 13.3905 -2.8545 -2.3136 26 1 13.7597 -4.0986 -0.2651 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.8430 2.0965 -0.0010 32 1 4.3550 1.6702 0.0002 33 1 4.7496 -2.9243 0.0138 34 1 7.4010 -2.5200 -0.8704 35 1 7.3964 -2.5126 0.9095 36 1 8.8151 -4.6291 0.0320 37 1 7.3740 -6.8879 0.9257 38 1 7.3799 -6.8941 -0.8543 39 1 10.2861 -9.0349 -0.0735 40 1 8.7153 -9.0454 0.7634 41 1 8.7777 -8.9074 -1.0102 42 1 8.9924 -5.9472 -2.7785 43 1 10.4682 -6.8807 -3.1234 44 1 9.0213 -7.7039 -2.4928 45 1 11.2043 -3.9881 -3.5164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485380260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:19 Heat of formation + Delta-G solvation = -21.815504 kcal Electronic energy + Delta-G solvation = -26629.480177 eV Core-core repulsion = 22774.377271 eV Total energy + Delta-G solvation = -3855.102906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.04459 -39.07996 -37.88550 -36.79222 -34.43287 -33.75087 -32.37838 -32.10730 -29.51775 -28.83958 -26.97892 -26.07184 -25.09869 -23.71225 -23.04184 -21.47783 -20.24540 -19.59582 -19.17933 -18.21119 -16.97747 -16.74836 -16.20320 -15.82018 -15.80067 -15.29492 -15.21243 -14.73461 -14.55246 -14.23477 -13.96155 -13.80157 -13.38174 -13.11419 -12.97510 -12.70647 -12.63669 -12.61957 -12.28293 -12.18399 -12.09130 -11.96528 -11.62954 -11.14396 -11.13236 -10.83764 -10.74609 -10.44509 -10.33288 -10.17162 -9.90683 -9.83257 -9.63481 -9.24795 -8.85991 -8.81645 -8.63486 -8.51170 -6.87407 -5.80052 -3.27547 0.28780 1.21921 1.63542 2.17086 2.88094 2.93211 3.13907 3.34264 3.41406 3.43100 3.78213 4.42059 4.43772 4.72351 4.83294 5.06363 5.09620 5.10742 5.30701 5.32777 5.33933 5.46680 5.52962 5.54690 5.61700 5.74505 5.89575 5.92404 6.03253 6.08129 6.12272 6.20956 6.29871 6.33890 6.64511 6.75205 6.83815 6.98655 7.35479 7.40658 7.68080 7.75096 7.97657 8.11937 8.30387 8.58100 9.15279 9.78115 10.27111 11.23054 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002474 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.325507 B =11313.965797 C =12627.917379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.199 4.199 3 C -0.158 4.158 4 C -0.051 4.051 5 C -0.267 4.267 6 C 0.591 3.409 7 O -0.529 6.529 8 N -0.711 5.711 9 C 0.100 3.900 10 C 0.506 3.494 11 O -0.563 6.563 12 N -0.691 5.691 13 C 0.108 3.892 14 C 0.158 3.842 15 H 0.069 0.931 16 C -0.158 4.158 17 N -0.594 5.594 18 C 0.163 3.837 19 C -0.263 4.263 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 S 0.210 5.790 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.408 0.592 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.418 0.582 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.042 0.958 44 H -0.002 1.002 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.390 5.773 6.579 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.319 4.319 3 C -0.189 4.189 4 C -0.084 4.084 5 C -0.387 4.387 6 C 0.377 3.623 7 O -0.407 6.407 8 N -0.366 5.366 9 C -0.027 4.027 10 C 0.291 3.709 11 O -0.444 6.444 12 N -0.341 5.341 13 C -0.019 4.019 14 C 0.049 3.951 15 H 0.087 0.913 16 C -0.218 4.218 17 N -0.317 5.317 18 C 0.019 3.981 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.205 1.205 27 S 0.478 5.522 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.680 4.419 6.418 20.240 hybrid contribution 1.334 1.957 -0.198 2.376 sum -17.347 6.376 6.220 19.500 Atomic orbital electron populations 1.20390 0.87401 1.03221 1.03337 1.24305 1.01615 0.98000 1.07942 1.19927 0.92599 0.99630 1.06768 1.20750 0.96197 0.95117 0.96351 1.24528 0.96755 0.98136 1.19307 1.16883 0.86950 0.81888 0.76612 1.90855 1.41701 1.57998 1.50153 1.45540 1.09230 1.06479 1.75320 1.21115 0.84453 0.91593 1.05501 1.20288 0.84718 0.89073 0.76784 1.90625 1.29251 1.72250 1.52224 1.45748 1.08934 1.07744 1.71672 1.21996 0.99953 0.79297 1.00615 1.20651 0.89605 0.92080 0.92792 0.91258 1.22173 1.01568 0.97356 1.00681 1.43956 1.27184 1.60488 1.00109 1.20759 0.97504 0.94657 0.85215 1.19215 1.00268 1.16166 1.03607 0.91377 1.24995 0.98385 0.97568 0.98358 1.70073 1.34576 1.35856 1.14022 0.86291 0.84532 0.78264 0.77614 1.21611 1.21750 1.20518 1.83228 0.94141 1.07153 1.67677 0.91210 0.90240 0.90219 0.83835 0.82868 0.75448 0.87552 0.88227 0.74420 0.92673 0.92222 0.92378 0.93563 0.92945 0.95319 0.93902 0.98341 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.33 36.01 0.37 -0.10 16 2 C -0.20 -1.71 6.28 -35.86 -0.23 -1.93 16 3 C -0.16 -1.42 10.00 -41.41 -0.41 -1.84 16 4 C -0.05 -0.57 10.01 -40.43 -0.40 -0.97 16 5 C -0.27 -3.39 6.45 -36.79 -0.24 -3.62 16 6 C 0.59 9.11 7.78 -12.89 -0.10 9.01 16 7 O -0.53 -9.73 16.84 5.19 0.09 -9.64 16 8 N -0.71 -10.59 5.52 -62.83 -0.35 -10.94 16 9 C 0.10 1.57 6.15 -5.20 -0.03 1.53 16 10 C 0.51 8.80 7.90 -10.99 -0.09 8.71 16 11 O -0.56 -10.76 15.67 5.56 0.09 -10.67 16 12 N -0.69 -12.37 5.39 -60.30 -0.32 -12.69 16 13 C 0.11 1.89 4.97 -4.05 -0.02 1.87 16 14 C 0.16 2.88 2.87 -67.93 -0.19 2.68 16 15 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 16 C -0.16 -2.51 9.18 37.16 0.34 -2.17 16 17 N -0.59 -13.29 2.29 -173.48 -0.40 -13.69 16 18 C 0.16 3.78 8.10 59.85 0.48 4.27 16 19 C -0.26 -6.52 9.33 -15.06 -0.14 -6.66 16 20 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 22 N -0.90 -24.44 10.63 55.49 0.59 -23.85 16 23 Si 0.90 20.84 29.57 -169.99 -5.03 15.81 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 S 0.21 2.10 22.08 -107.50 -2.37 -0.27 16 28 H 0.07 0.35 8.11 -51.93 -0.42 -0.08 16 29 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.41 5.79 6.55 -40.82 -0.27 5.52 16 34 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.42 7.96 7.89 -40.82 -0.32 7.63 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.13 7.84 -51.93 -0.41 0.72 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.84 6.66 -51.93 -0.35 0.50 16 42 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 43 H 0.04 1.09 7.20 -51.92 -0.37 0.71 16 44 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 45 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -30.10 388.97 -9.20 -39.31 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.61 Total: 9.93 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -0.75 Total: 10.85 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.48 Total: -61.17 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.17 Total: -20.32 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.37 Total: -0.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.10 -9.20 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485380260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.491 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds