Wall clock time and date at job start Tue Mar 31 2020 23:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33820 * 124.52200 * 2 1 4 4 C 1.37469 * 115.10032 * 179.97438 * 3 2 1 5 5 C 1.36652 * 113.29577 * 359.97438 * 4 3 2 6 6 C 1.46583 * 125.45487 * 180.26357 * 5 4 3 7 7 O 1.21704 * 120.00092 * 359.71670 * 6 5 4 8 8 N 1.34780 * 119.99734 * 179.72100 * 6 5 4 9 9 C 1.46498 * 120.00069 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47269 * 180.02562 * 9 8 6 11 11 O 1.21276 * 120.00200 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00230 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00225 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47279 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.46947 * 64.99584 * 14 13 12 16 16 C 1.53003 * 109.47471 * 184.99601 * 14 13 12 17 17 N 1.46497 * 109.47154 * 304.99659 * 14 13 12 18 18 C 1.46499 * 120.00039 * 300.00207 * 17 14 13 19 19 C 1.36938 * 119.99716 * 119.99862 * 17 14 13 20 20 H 1.07998 * 120.00856 * 21.94530 * 19 17 14 21 21 C 1.38817 * 119.99738 * 201.94212 * 19 17 14 22 22 N 1.31620 * 119.99896 * 12.69258 * 21 19 17 23 23 Si 1.86800 * 120.00215 * 192.68726 * 21 19 17 24 24 H 1.48504 * 109.47054 * 89.99845 * 23 21 19 25 25 H 1.48497 * 109.47494 * 210.00053 * 23 21 19 26 26 H 1.48495 * 109.47027 * 330.00350 * 23 21 19 27 27 S 1.70610 * 124.52131 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47233 * 300.02162 * 1 2 3 30 30 H 1.08997 * 109.46789 * 60.01509 * 1 2 3 31 31 H 1.08000 * 122.45095 * 359.93968 * 3 2 1 32 32 H 1.07997 * 123.35290 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00004 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.47188 * 300.00292 * 9 8 6 35 35 H 1.09000 * 109.46662 * 59.99843 * 9 8 6 36 36 H 0.97000 * 119.99481 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46970 * 299.99566 * 13 12 10 38 38 H 1.09000 * 109.47697 * 59.99616 * 13 12 10 39 39 H 1.09000 * 109.47127 * 180.02562 * 16 14 13 40 40 H 1.09006 * 109.46594 * 300.00372 * 16 14 13 41 41 H 1.09000 * 109.47049 * 60.00046 * 16 14 13 42 42 H 1.08996 * 109.47504 * 94.31568 * 18 17 14 43 43 H 1.09009 * 109.46788 * 214.31301 * 18 17 14 44 44 H 1.09001 * 109.46649 * 334.30809 * 18 17 14 45 45 H 0.97000 * 120.00005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0078 7 8 6.2659 -0.2320 0.0075 8 7 5.5096 -2.3216 0.0139 9 6 6.8718 -2.8605 0.0196 10 6 6.8163 -4.3664 0.0251 11 8 5.7444 -4.9337 0.0239 12 7 7.9578 -5.0829 0.0314 13 6 7.9038 -6.5468 0.0362 14 6 9.3265 -7.1096 0.0423 15 1 9.8214 -6.8362 0.9742 16 6 9.2726 -8.6339 -0.0783 17 7 10.0753 -6.5565 -1.0888 18 6 9.6094 -6.7868 -2.4585 19 6 11.2107 -5.8242 -0.8658 20 1 11.7533 -5.9376 0.0611 21 6 11.6645 -4.9359 -1.8312 22 7 10.8871 -4.6085 -2.8416 23 14 13.3783 -4.2050 -1.6963 24 1 14.3470 -5.0811 -2.4029 25 1 13.3905 -2.8545 -2.3136 26 1 13.7597 -4.0986 -0.2651 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.8430 2.0965 -0.0010 32 1 4.3550 1.6702 0.0002 33 1 4.7496 -2.9243 0.0138 34 1 7.4010 -2.5200 -0.8704 35 1 7.3964 -2.5126 0.9095 36 1 8.8151 -4.6291 0.0320 37 1 7.3740 -6.8879 0.9257 38 1 7.3799 -6.8941 -0.8543 39 1 10.2861 -9.0349 -0.0735 40 1 8.7153 -9.0454 0.7634 41 1 8.7777 -8.9074 -1.0102 42 1 8.9924 -5.9472 -2.7785 43 1 10.4682 -6.8807 -3.1234 44 1 9.0213 -7.7039 -2.4928 45 1 11.2043 -3.9881 -3.5164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485380260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:18 Heat of formation + Delta-G solvation = -41.213480 kcal Electronic energy + Delta-G solvation = -26630.321336 eV Core-core repulsion = 22774.377271 eV Total energy + Delta-G solvation = -3855.944065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33050 -40.38382 -38.75784 -38.38724 -35.76314 -35.34562 -33.81531 -33.05864 -31.20030 -30.02428 -27.99731 -27.93479 -26.35590 -24.87450 -24.43926 -22.53163 -21.59944 -21.03447 -20.39879 -19.17806 -18.82153 -17.89806 -17.51746 -17.21629 -16.97523 -16.75142 -16.51206 -16.10144 -15.69825 -15.65614 -14.89139 -14.87989 -14.66620 -14.57309 -14.18743 -14.09885 -13.99582 -13.69638 -13.50321 -13.33968 -13.14977 -12.93656 -12.83608 -12.74050 -12.60452 -12.47755 -12.25746 -12.07580 -11.88797 -11.72726 -11.46555 -11.39908 -11.09151 -10.59515 -10.49838 -9.98097 -9.66694 -9.58997 -8.76510 -7.76794 -5.24214 -0.56467 0.41695 0.85977 1.32333 1.48136 1.49401 1.52742 1.58884 1.69371 2.06363 2.44020 2.54226 3.37397 3.57266 3.67376 3.76519 3.86508 4.07999 4.20610 4.25003 4.30874 4.36961 4.42118 4.63607 4.67826 4.73038 4.75466 4.83230 4.86765 5.00987 5.05157 5.07982 5.11107 5.16711 5.29838 5.33287 5.40172 5.44664 5.59809 5.71518 5.77885 6.23039 6.36664 6.53143 6.91165 7.11849 7.20092 7.91917 8.36390 9.24434 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002474 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.325507 B =11313.965797 C =12627.917379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.181 4.181 3 C -0.168 4.168 4 C -0.045 4.045 5 C -0.309 4.309 6 C 0.590 3.410 7 O -0.569 6.569 8 N -0.708 5.708 9 C 0.106 3.894 10 C 0.511 3.489 11 O -0.578 6.578 12 N -0.694 5.694 13 C 0.114 3.886 14 C 0.155 3.845 15 H 0.075 0.925 16 C -0.149 4.149 17 N -0.603 5.603 18 C 0.181 3.819 19 C -0.255 4.255 20 H 0.075 0.925 21 C -0.044 4.044 22 N -0.929 5.929 23 Si 0.957 3.043 24 H -0.295 1.295 25 H -0.303 1.303 26 H -0.267 1.267 27 S 0.219 5.781 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.172 0.828 32 H 0.151 0.849 33 H 0.412 0.588 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.000 1.000 43 H 0.013 0.987 44 H 0.024 0.976 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 5.496 8.037 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.301 4.301 3 C -0.197 4.197 4 C -0.080 4.080 5 C -0.429 4.429 6 C 0.378 3.622 7 O -0.451 6.451 8 N -0.362 5.362 9 C -0.021 4.021 10 C 0.296 3.704 11 O -0.460 6.460 12 N -0.343 5.343 13 C -0.012 4.012 14 C 0.048 3.952 15 H 0.093 0.907 16 C -0.209 4.209 17 N -0.326 5.326 18 C 0.036 3.964 19 C -0.385 4.385 20 H 0.092 0.908 21 C -0.240 4.240 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.222 1.222 25 H -0.231 1.231 26 H -0.192 1.192 27 S 0.487 5.513 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.189 0.811 32 H 0.169 0.831 33 H 0.250 0.750 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.249 0.751 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.019 0.981 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.631 4.095 7.916 22.474 hybrid contribution 1.802 2.008 -0.603 2.764 sum -18.829 6.103 7.313 21.101 Atomic orbital electron populations 1.20574 0.84837 1.04295 1.04887 1.24796 1.03164 0.96998 1.05188 1.20143 0.91471 1.01141 1.06960 1.20983 0.97479 0.94546 0.94966 1.24350 0.96372 0.99273 1.22903 1.17280 0.87859 0.81519 0.75495 1.90816 1.43296 1.58717 1.52255 1.45516 1.08913 1.06602 1.75192 1.21014 0.85135 0.90468 1.05485 1.20440 0.84264 0.89558 0.76102 1.90610 1.29679 1.72724 1.52993 1.45806 1.08761 1.08055 1.71694 1.21940 0.99351 0.78995 1.00909 1.20863 0.89408 0.93549 0.91371 0.90652 1.22064 1.01814 0.95051 1.01923 1.44089 1.27288 1.60332 1.00875 1.20422 0.95966 0.94643 0.85349 1.19491 1.00735 1.15045 1.03207 0.90751 1.25580 1.00959 0.98728 0.98685 1.70226 1.35706 1.36842 1.14784 0.85425 0.81368 0.76703 0.77825 1.22224 1.23052 1.19210 1.83158 0.92969 1.07608 1.67565 0.90453 0.88472 0.88625 0.81108 0.83134 0.74988 0.88808 0.87007 0.75060 0.90526 0.93606 0.92866 0.90345 0.93303 0.98142 0.96843 0.95771 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.33 71.24 0.74 0.07 16 2 C -0.18 -2.67 6.28 24.68 0.15 -2.52 16 3 C -0.17 -2.66 10.00 21.08 0.21 -2.45 16 4 C -0.05 -1.00 10.01 21.72 0.22 -0.78 16 5 C -0.31 -7.88 6.45 24.08 0.16 -7.73 16 6 C 0.59 18.82 7.78 86.42 0.67 19.49 16 7 O -0.57 -21.88 16.84 -4.36 -0.07 -21.95 16 8 N -0.71 -21.59 5.52 -470.91 -2.60 -24.19 16 9 C 0.11 3.40 6.15 85.63 0.53 3.92 16 10 C 0.51 17.74 7.90 87.66 0.69 18.43 16 11 O -0.58 -21.85 15.67 -3.02 -0.05 -21.89 16 12 N -0.69 -24.63 5.39 -463.09 -2.49 -27.13 16 13 C 0.11 3.83 4.97 86.38 0.43 4.26 16 14 C 0.16 5.39 2.87 44.99 0.13 5.52 16 15 H 0.08 2.55 7.86 -2.39 -0.02 2.53 16 16 C -0.15 -4.33 9.18 71.98 0.66 -3.67 16 17 N -0.60 -26.63 2.29 -702.77 -1.61 -28.24 16 18 C 0.18 8.48 8.10 127.77 1.04 9.52 16 19 C -0.25 -12.49 9.33 84.03 0.78 -11.71 16 20 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 21 C -0.04 -2.27 5.10 84.86 0.43 -1.84 16 22 N -0.93 -51.78 10.63 21.65 0.23 -51.55 16 23 Si 0.96 43.29 29.57 68.60 2.03 45.32 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 S 0.22 4.15 22.08 -56.49 -1.25 2.90 16 28 H 0.08 0.51 8.11 -2.39 -0.02 0.49 16 29 H 0.10 0.48 8.14 -2.38 -0.02 0.47 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.41 11.83 6.55 -92.71 -0.61 11.22 16 34 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.41 15.75 7.89 -92.71 -0.73 15.02 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.68 7.84 -2.39 -0.02 1.66 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.05 1.45 6.66 -2.39 -0.02 1.43 16 42 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 43 H 0.01 0.67 7.20 -2.38 -0.02 0.66 16 44 H 0.02 0.98 6.43 -2.39 -0.02 0.97 16 45 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -65.61 388.97 0.71 -64.91 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -0.32 Total: 31.31 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 6.84 Total: 30.52 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -6.47 Total: -131.10 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.12 Total: -43.84 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.25 Total: 2.90 kcal Total: -65.61 0.71 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485380260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.692 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds