Wall clock time and date at job start Tue Mar 31 2020 22:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48504 * 109.47043 * 269.99996 * 3 2 1 5 5 H 1.48501 * 109.47457 * 29.99700 * 3 2 1 6 6 H 1.48496 * 109.47490 * 149.99607 * 3 2 1 7 7 C 1.38812 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99958 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99881 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46673 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46895 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47414 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00340 * 179.97438 * 13 12 11 15 15 C 1.53039 * 109.45992 * 209.99590 * 14 13 12 16 16 C 1.53198 * 109.31240 * 178.61290 * 15 14 13 17 17 N 1.46924 * 108.77276 * 54.63620 * 16 15 14 18 18 C 1.34778 * 120.62670 * 126.36790 * 17 16 15 19 19 O 1.21628 * 120.00077 * 353.51764 * 18 17 16 20 20 C 1.47103 * 119.99741 * 173.51563 * 18 17 16 21 21 C 1.38389 * 127.99863 * 155.29310 * 20 18 17 22 22 C 1.37574 * 111.26119 * 179.88682 * 21 20 18 23 23 N 1.29556 * 117.95086 * 0.43458 * 22 21 20 24 24 S 1.56304 * 110.37980 * 359.75040 * 23 22 21 25 25 C 1.46926 * 118.73942 * 306.64045 * 17 16 15 26 26 C 1.52761 * 109.00502 * 53.31487 * 25 17 16 27 27 H 0.97001 * 120.00495 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99610 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46744 * 60.00223 * 10 9 7 30 30 H 1.08991 * 109.47130 * 299.99691 * 10 9 7 31 31 H 1.08998 * 109.47105 * 60.00748 * 11 10 9 32 32 H 1.08998 * 109.47653 * 299.99727 * 11 10 9 33 33 H 1.08999 * 109.47394 * 60.00199 * 12 11 10 34 34 H 1.09005 * 109.46910 * 300.00046 * 12 11 10 35 35 H 1.09000 * 109.46143 * 329.97209 * 14 13 12 36 36 H 1.09003 * 109.49559 * 58.66606 * 15 14 13 37 37 H 1.08996 * 109.52636 * 298.58267 * 15 14 13 38 38 H 1.09001 * 109.58587 * 294.85164 * 16 15 14 39 39 H 1.08995 * 109.69938 * 174.49782 * 16 15 14 40 40 H 1.08002 * 124.36323 * 0.02958 * 21 20 18 41 41 H 1.08004 * 121.02097 * 180.19058 * 22 21 20 42 42 H 1.09002 * 109.58364 * 173.13959 * 25 17 16 43 43 H 1.08993 * 109.58820 * 293.57311 * 25 17 16 44 44 H 1.09004 * 109.56109 * 185.54962 * 26 25 17 45 45 H 1.08997 * 109.36844 * 65.49469 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8196 0.0012 12 6 1.8289 -6.1447 0.0018 13 8 0.9003 -7.2309 0.0018 14 6 1.5149 -8.5210 0.0018 15 6 0.6059 -9.5187 -0.7196 16 6 1.2834 -10.8925 -0.7480 17 7 1.6303 -11.2771 0.6269 18 6 1.2260 -12.4594 1.1320 19 8 0.4705 -13.1671 0.4933 20 6 1.6984 -12.8940 2.4555 21 6 1.0880 -13.7749 3.3311 22 6 1.8335 -13.9374 4.4758 23 7 2.9413 -13.2736 4.5784 24 16 3.1758 -12.4051 3.3002 25 6 2.4213 -10.3457 1.4428 26 6 1.7357 -8.9805 1.4448 27 1 -0.4851 0.8400 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.6847 -3.7144 0.8905 30 1 2.6847 -3.7145 -0.8894 31 1 0.4370 -4.7622 -0.8886 32 1 0.4375 -4.7618 0.8914 33 1 2.4556 -6.2020 0.8918 34 1 2.4555 -6.2028 -0.8882 35 1 2.4743 -8.4662 -0.5125 36 1 0.4301 -9.1786 -1.7402 37 1 -0.3449 -9.5928 -0.1919 38 1 2.1889 -10.8409 -1.3525 39 1 0.6019 -11.6295 -1.1728 40 1 0.1488 -14.2724 3.1393 41 1 1.5034 -14.5952 5.2664 42 1 2.4882 -10.7208 2.4641 43 1 3.4214 -10.2487 1.0205 44 1 2.3641 -8.2574 1.9648 45 1 0.7745 -9.0595 1.9526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485443496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:21 Heat of formation + Delta-G solvation = -22.904376 kcal Electronic energy + Delta-G solvation = -26072.228033 eV Core-core repulsion = 22217.077910 eV Total energy + Delta-G solvation = -3855.150123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81762 -39.64392 -38.67553 -36.86896 -35.15796 -33.14939 -32.38833 -31.67323 -31.32326 -29.58667 -26.98623 -25.47193 -24.66844 -23.99733 -22.61917 -22.29170 -21.17927 -20.66501 -19.71368 -19.00919 -17.34228 -17.06669 -16.95754 -16.56848 -16.05674 -15.76316 -15.50502 -14.97147 -14.84314 -14.60269 -14.49511 -14.22599 -14.00106 -13.74953 -13.37781 -13.25438 -13.14030 -12.89127 -12.62800 -12.38533 -11.86805 -11.77506 -11.56197 -11.30860 -11.12806 -10.99323 -10.89195 -10.74137 -10.63844 -10.62294 -10.50571 -10.22614 -10.06219 -9.71868 -9.58407 -9.27250 -9.19566 -8.88166 -6.93418 -5.76687 -3.06013 -0.22431 0.68695 1.34047 1.70884 2.26105 2.54983 3.43390 3.45835 3.49602 3.50814 3.79611 4.15751 4.40721 4.45663 4.50274 4.53179 4.59731 4.72549 4.76297 4.93921 5.00082 5.04231 5.10608 5.22892 5.26493 5.29221 5.36307 5.41787 5.54837 5.56658 5.58621 5.73180 5.84500 5.95951 5.97682 5.98855 6.07772 6.25937 6.35199 6.71755 6.81139 6.85182 7.21748 7.50853 7.68928 8.41997 9.52933 10.10876 10.45522 11.46218 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.001698 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.540566 B =16481.280830 C =17260.859492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.067 3.933 13 O -0.378 6.378 14 C 0.091 3.909 15 C -0.133 4.133 16 C 0.117 3.883 17 N -0.606 5.606 18 C 0.600 3.400 19 O -0.521 6.521 20 C -0.274 4.274 21 C -0.109 4.109 22 C 0.061 3.939 23 N -0.530 5.530 24 S 0.434 5.566 25 C 0.100 3.900 26 C -0.157 4.157 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -31.638 4.577 32.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.297 6.297 14 C 0.033 3.967 15 C -0.171 4.171 16 C -0.004 4.004 17 N -0.340 5.340 18 C 0.387 3.613 19 O -0.398 6.398 20 C -0.408 4.408 21 C -0.144 4.144 22 C -0.131 4.131 23 N -0.359 5.359 24 S 0.590 5.410 25 C -0.025 4.025 26 C -0.196 4.196 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.193 0.807 41 H 0.200 0.800 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.129 -30.957 4.813 32.130 hybrid contribution -1.178 0.005 0.077 1.181 sum 5.951 -30.952 4.890 31.896 Atomic orbital electron populations 1.69663 1.05133 1.25700 1.57635 1.24767 0.95561 0.97772 1.02983 0.86163 0.78610 0.83725 0.77522 1.21689 1.21736 1.20755 1.19234 0.91047 0.84128 1.42842 0.91136 1.42343 1.05970 0.99914 1.89527 1.20509 0.93302 0.85482 0.97802 1.21672 0.99429 0.91833 1.03345 1.22553 0.91890 0.86603 0.99896 1.87962 1.33813 1.13043 1.94929 1.21972 0.96282 0.84185 0.94309 1.22002 0.99767 0.92938 1.02390 1.21701 1.00971 0.96616 0.81152 1.47970 1.54158 1.17015 1.14850 1.16758 0.80090 0.81124 0.83342 1.90833 1.34716 1.54308 1.59946 1.26825 1.04845 1.07632 1.01491 1.22138 1.02380 0.97723 0.92181 1.22290 0.90347 1.00954 0.99512 1.72168 1.22677 1.14759 1.26260 1.81917 1.19291 1.37194 1.02643 1.22036 0.95288 0.89716 0.95465 1.22369 1.02638 0.95572 0.98984 0.93468 0.78173 0.96361 0.96342 0.91156 0.91195 0.93371 0.93282 0.91793 0.89357 0.90349 0.90574 0.87970 0.80735 0.79977 0.90004 0.89795 0.89551 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.95 5.60 -59.91 -0.34 -19.29 16 10 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 11 C -0.12 -2.05 5.70 -26.73 -0.15 -2.21 16 12 C 0.07 0.86 5.75 37.16 0.21 1.07 16 13 O -0.38 -4.74 9.99 -35.23 -0.35 -5.09 16 14 C 0.09 0.80 2.57 -26.69 -0.07 0.74 16 15 C -0.13 -1.07 5.73 -26.61 -0.15 -1.22 16 16 C 0.12 0.84 6.45 -3.71 -0.02 0.81 16 17 N -0.61 -4.72 2.98 -174.42 -0.52 -5.24 16 18 C 0.60 5.77 7.65 -12.66 -0.10 5.67 16 19 O -0.52 -6.60 16.45 5.25 0.09 -6.51 16 20 C -0.27 -2.18 6.14 -35.93 -0.22 -2.40 16 21 C -0.11 -0.73 10.48 -39.77 -0.42 -1.15 16 22 C 0.06 0.39 11.14 -18.75 -0.21 0.18 16 23 N -0.53 -4.30 11.29 21.63 0.24 -4.06 16 24 S 0.43 2.85 19.69 -107.50 -2.12 0.73 16 25 C 0.10 0.60 5.64 -3.93 -0.02 0.58 16 26 C -0.16 -1.19 5.68 -26.83 -0.15 -1.34 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.55 7.84 -51.93 -0.41 0.15 16 34 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.82 7.00 -51.93 -0.36 0.46 16 40 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.18 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.08 0.46 3.75 -24.69 -0.09 0.37 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.61 7.84 -51.93 -0.41 0.20 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -34.75 380.11 -9.74 -44.49 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.60 Total: 3.29 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.57 Total: -3.68 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.11 Total: -56.38 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.27 Total: -11.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.12 Total: 0.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.75 -9.74 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485443496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.585 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds