Wall clock time and date at job start Tue Mar 31 2020 22:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99493 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00153 * 3 2 1 6 6 H 1.48500 * 109.47148 * 59.99944 * 3 2 1 7 7 C 1.38795 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99630 * 180.27659 * 7 2 1 9 9 S 1.76199 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47042 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99776 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99565 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47032 * 179.97438 * 14 13 11 16 16 H 1.09005 * 115.51477 * 29.42372 * 15 14 13 17 17 C 1.52991 * 117.44805 * 243.99812 * 15 14 13 18 18 H 1.09002 * 119.52511 * 4.09236 * 17 15 14 19 19 C 1.57646 * 116.14096 * 161.43725 * 17 15 14 20 20 N 1.48554 * 104.59365 * 87.43927 * 19 17 15 21 21 C 1.46902 * 111.00012 * 200.32482 * 20 19 17 22 22 H 1.08998 * 110.43492 * 56.11401 * 21 20 19 23 23 C 1.54633 * 110.48441 * 293.57576 * 21 20 19 24 24 C 1.54831 * 101.60355 * 266.08163 * 23 21 20 25 25 N 1.46766 * 105.49373 * 334.56404 * 24 23 21 26 26 C 1.34418 * 111.29840 * 17.04150 * 25 24 23 27 27 O 1.21287 * 124.94072 * 179.62916 * 26 25 24 28 28 C 1.48567 * 104.22188 * 319.87784 * 20 19 17 29 29 C 1.52996 * 117.44531 * 174.83456 * 15 14 13 30 30 H 1.09007 * 119.52408 * 355.91958 * 29 15 14 31 31 H 0.96991 * 120.00676 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 33 33 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 34 34 H 0.96993 * 120.00370 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47377 * 299.99327 * 14 13 11 36 36 H 1.09001 * 109.47256 * 60.00369 * 14 13 11 37 37 H 1.08993 * 110.94851 * 328.38403 * 19 17 15 38 38 H 1.09009 * 109.96841 * 205.99299 * 19 17 15 39 39 H 1.08998 * 110.96882 * 24.23626 * 23 21 20 40 40 H 1.08993 * 110.96881 * 147.99826 * 23 21 20 41 41 H 1.09000 * 110.21629 * 215.57190 * 24 23 21 42 42 H 1.08996 * 110.33322 * 93.62420 * 24 23 21 43 43 H 0.96999 * 124.34979 * 197.01597 * 25 24 23 44 44 H 1.08994 * 110.41126 * 280.70759 * 28 20 19 45 45 H 1.09002 * 110.50884 * 158.31493 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 0.0040 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7915 -5.5023 -0.0011 13 7 2.8446 -6.3429 -0.0008 14 6 2.3309 -7.7150 -0.0008 15 6 3.5031 -8.6984 -0.0009 16 1 4.4135 -8.3438 0.4823 17 6 3.6607 -9.6076 -1.2213 18 1 2.9890 -9.4870 -2.0713 19 6 5.0788 -10.2677 -1.4171 20 7 5.0203 -11.5226 -0.6242 21 6 6.3699 -12.0069 -0.3048 22 1 6.9374 -11.2361 0.2165 23 6 7.1067 -12.4440 -1.5921 24 6 6.7956 -13.9603 -1.6295 25 7 6.5442 -14.3434 -0.2352 26 6 6.2966 -13.2664 0.5301 27 8 6.0510 -13.2994 1.7173 28 6 4.2859 -11.1408 0.6096 29 6 3.1741 -10.1876 0.1212 30 1 2.1402 -10.4988 0.2707 31 1 -0.4851 0.8399 0.0004 32 1 3.1247 -3.7312 -0.8905 33 1 3.1247 -3.7311 0.8895 34 1 3.8013 -6.1833 -0.0004 35 1 1.7221 -7.8750 0.8890 36 1 1.7227 -7.8752 -0.8910 37 1 5.8672 -9.6163 -1.0402 38 1 5.2429 -10.4914 -2.4713 39 1 6.6974 -11.9382 -2.4666 40 1 8.1788 -12.2669 -1.5071 41 1 7.6500 -14.5105 -2.0236 42 1 5.9118 -14.1507 -2.2382 43 1 6.5550 -15.2565 0.0920 44 1 4.9503 -10.6261 1.3036 45 1 3.8510 -12.0211 1.0830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485593978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:31 Heat of formation + Delta-G solvation = -26.546475 kcal Electronic energy + Delta-G solvation = -25803.943003 eV Core-core repulsion = 21948.634947 eV Total energy + Delta-G solvation = -3855.308056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29074 -39.87441 -38.92367 -36.91553 -35.44823 -33.71812 -32.42621 -30.89675 -29.67073 -28.77923 -27.87579 -26.15077 -25.41359 -23.18882 -22.22344 -21.08892 -20.62797 -20.33772 -20.06523 -17.90330 -17.86396 -17.42539 -16.44731 -16.12871 -15.95177 -15.26780 -15.21742 -14.90927 -14.80309 -14.58322 -14.24219 -14.02800 -13.90274 -13.68239 -13.63287 -13.19598 -13.09391 -12.87795 -12.56074 -12.45830 -12.19416 -11.97334 -11.83490 -11.61912 -11.43111 -11.07036 -11.01725 -10.76326 -10.41303 -10.30042 -10.27338 -9.80455 -9.63033 -9.40158 -9.07627 -9.05325 -8.86922 -8.22731 -6.49637 -6.21569 -3.92038 1.99308 2.81184 2.94674 3.09613 3.18970 3.21650 3.28959 3.33278 3.45063 3.68375 3.72212 3.88005 4.02447 4.20478 4.30669 4.34106 4.49442 4.63346 4.68835 4.79400 4.85055 4.90405 4.96492 5.02458 5.13647 5.13848 5.15561 5.19490 5.30475 5.36948 5.53320 5.61107 5.65844 5.75376 5.79550 5.89978 5.96445 6.08512 6.14286 6.29457 6.33690 6.47629 6.61139 7.60035 7.70611 7.74071 8.35603 8.61319 9.23865 10.85942 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.001596 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.195890 B =17538.003696 C =17878.234508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.154 3.846 15 C -0.133 4.133 16 H 0.107 0.893 17 C -0.152 4.152 18 H 0.128 0.872 19 C 0.061 3.939 20 N -0.492 5.492 21 C 0.036 3.964 22 H 0.080 0.920 23 C -0.129 4.129 24 C 0.107 3.893 25 N -0.726 5.726 26 C 0.532 3.468 27 O -0.528 6.528 28 C 0.064 3.936 29 C -0.153 4.153 30 H 0.122 0.878 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.411 0.589 44 H 0.054 0.946 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.408 -29.292 -5.313 34.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.392 5.392 14 C 0.030 3.970 15 C -0.152 4.152 16 H 0.125 0.875 17 C -0.171 4.171 18 H 0.146 0.854 19 C -0.066 4.066 20 N -0.218 5.218 21 C -0.076 4.076 22 H 0.097 0.903 23 C -0.167 4.167 24 C -0.017 4.017 25 N -0.382 5.382 26 C 0.316 3.684 27 O -0.403 6.403 28 C -0.063 4.063 29 C -0.172 4.172 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.232 0.768 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.250 0.750 44 H 0.072 0.928 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.859 -29.889 -5.010 33.752 hybrid contribution 2.892 1.487 0.509 3.292 sum 17.751 -28.401 -4.501 33.794 Atomic orbital electron populations 1.70026 1.05948 1.27352 1.46952 1.24995 0.95027 0.99037 0.94550 0.86114 0.79571 0.81887 0.77900 1.19631 1.20566 1.20569 1.22913 0.94950 0.91652 1.58822 0.90869 1.85408 1.04952 0.96343 1.96710 1.23529 1.06562 0.95350 1.04931 1.20305 0.86498 0.86270 0.75144 1.90705 1.15388 1.85613 1.47512 1.45964 1.09969 1.05250 1.77969 1.20726 0.93792 0.79902 1.02614 1.22717 1.00372 0.91159 1.00927 0.87483 1.24260 0.97481 1.02831 0.92521 0.85406 1.23245 0.95007 0.89019 0.99289 1.65577 1.11947 1.28452 1.15844 1.22555 0.92010 0.96324 0.96745 0.90251 1.22778 1.00675 0.95329 0.97880 1.22087 1.01701 0.95398 0.82557 1.46122 1.72257 1.09357 1.10447 1.20548 0.75005 0.86261 0.86557 1.90781 1.48414 1.86656 1.14450 1.22644 0.94289 0.98385 0.90995 1.23384 1.00178 0.92605 1.01062 0.86001 0.92232 0.89205 0.89219 0.76789 0.90890 0.91208 0.92908 0.89159 0.88309 0.89485 0.90281 0.90403 0.74996 0.92821 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 12 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 13 N -0.74 -9.64 5.56 -60.29 -0.33 -9.98 16 14 C 0.15 1.75 5.95 -4.04 -0.02 1.72 16 15 C -0.13 -1.11 5.34 -90.62 -0.48 -1.59 16 16 H 0.11 0.84 8.04 -51.93 -0.42 0.42 16 17 C -0.15 -1.12 7.01 -87.50 -0.61 -1.74 16 18 H 0.13 0.94 8.12 -51.93 -0.42 0.52 16 19 C 0.06 0.37 5.66 -0.37 0.00 0.37 16 20 N -0.49 -3.53 5.21 -219.84 -1.15 -4.67 16 21 C 0.04 0.23 2.39 -67.72 -0.16 0.07 16 22 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 23 C -0.13 -0.41 6.71 -24.91 -0.17 -0.58 16 24 C 0.11 0.31 7.79 -2.93 -0.02 0.28 16 25 N -0.73 -3.91 6.24 -59.01 -0.37 -4.28 16 26 C 0.53 4.60 7.49 -10.86 -0.08 4.52 16 27 O -0.53 -6.75 17.30 5.55 0.10 -6.65 16 28 C 0.06 0.55 5.32 -2.18 -0.01 0.54 16 29 C -0.15 -1.25 6.76 -89.31 -0.60 -1.86 16 30 H 0.12 1.00 8.14 -51.92 -0.42 0.57 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 34 H 0.40 4.02 8.40 -40.82 -0.34 3.68 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.85 7.93 -51.93 -0.41 0.43 16 37 H 0.05 0.30 7.94 -51.93 -0.41 -0.11 16 38 H 0.09 0.43 7.27 -51.92 -0.38 0.05 16 39 H 0.10 0.24 6.65 -51.93 -0.35 -0.10 16 40 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.41 1.68 8.96 -40.82 -0.37 1.31 16 44 H 0.05 0.49 7.98 -51.93 -0.41 0.08 16 45 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -37.10 384.52 -11.05 -48.15 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.84 Total: 0.60 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.84 Total: -4.28 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -1.12 Total: -44.39 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.18 Total: -18.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.10 -11.05 -48.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485593978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.605 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds