Wall clock time and date at job start Tue Mar 31 2020 22:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99493 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00153 * 3 2 1 6 6 H 1.48500 * 109.47148 * 59.99944 * 3 2 1 7 7 C 1.38795 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99630 * 180.27659 * 7 2 1 9 9 S 1.76199 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47042 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99776 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99565 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47032 * 179.97438 * 14 13 11 16 16 H 1.09000 * 115.51339 * 330.42697 * 15 14 13 17 17 C 1.52991 * 117.44501 * 184.99755 * 15 14 13 18 18 H 1.09001 * 119.52854 * 4.10326 * 17 15 14 19 19 C 1.54385 * 118.12948 * 159.13348 * 17 15 14 20 20 N 1.52138 * 102.88841 * 88.03704 * 19 17 15 21 21 C 1.46903 * 110.66661 * 200.86479 * 20 19 17 22 22 H 1.09003 * 110.43409 * 174.79520 * 21 20 19 23 23 C 1.54632 * 110.48508 * 297.33008 * 21 20 19 24 24 C 1.54476 * 101.76210 * 93.88043 * 23 21 20 25 25 N 1.46760 * 105.47449 * 25.41902 * 24 23 21 26 26 C 1.34742 * 111.35347 * 343.01340 * 25 24 23 27 27 O 1.21278 * 125.12906 * 180.37906 * 26 25 24 28 28 C 1.48559 * 104.44627 * 320.38240 * 20 19 17 29 29 C 1.52999 * 117.43840 * 115.77073 * 15 14 13 30 30 H 1.08997 * 119.52881 * 355.91568 * 29 15 14 31 31 H 0.96991 * 120.00676 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 33 33 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 34 34 H 0.96993 * 120.00370 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47377 * 299.99327 * 14 13 11 36 36 H 1.09001 * 109.47256 * 60.00369 * 14 13 11 37 37 H 1.09001 * 110.41554 * 206.01284 * 19 17 15 38 38 H 1.09000 * 110.40594 * 328.45807 * 19 17 15 39 39 H 1.09000 * 110.96891 * 211.99800 * 23 21 20 40 40 H 1.08997 * 110.96938 * 335.76203 * 23 21 20 41 41 H 1.09005 * 110.24617 * 144.41336 * 24 23 21 42 42 H 1.08994 * 110.24643 * 266.32853 * 24 23 21 43 43 H 0.97000 * 124.35069 * 162.98518 * 25 24 23 44 44 H 1.08996 * 110.41142 * 280.96882 * 28 20 19 45 45 H 1.09005 * 110.41165 * 158.52712 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 0.0040 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3026 -0.0012 12 8 0.7915 -5.5023 -0.0011 13 7 2.8446 -6.3429 -0.0008 14 6 2.3309 -7.7150 -0.0008 15 6 3.5031 -8.6984 -0.0009 16 1 4.4126 -8.3447 -0.4865 17 6 3.1739 -10.1878 -0.1193 18 1 2.1398 -10.4994 -0.2664 19 6 4.2848 -11.1422 -0.6077 20 7 4.9982 -11.5206 0.6817 21 6 6.3541 -12.0102 0.3995 22 1 6.8937 -12.1932 1.3287 23 6 6.2977 -13.2972 -0.4559 24 6 6.4279 -12.7301 -1.8869 25 7 7.1350 -11.4526 -1.7390 26 6 7.1057 -11.0204 -0.4631 27 8 7.6064 -9.9907 -0.0634 28 6 5.0399 -10.2596 1.4660 29 6 3.6638 -9.6039 1.2218 30 1 2.9943 -9.4808 2.0731 31 1 -0.4851 0.8399 0.0004 32 1 3.1247 -3.7312 -0.8905 33 1 3.1247 -3.7311 0.8895 34 1 3.8013 -6.1833 -0.0004 35 1 1.7221 -7.8750 0.8890 36 1 1.7227 -7.8752 -0.8910 37 1 3.8491 -12.0244 -1.0767 38 1 4.9479 -10.6287 -1.3039 39 1 7.1317 -13.9585 -0.2210 40 1 5.3454 -13.8110 -0.3251 41 1 7.0063 -13.4111 -2.5114 42 1 5.4408 -12.5685 -2.3198 43 1 7.5686 -10.9796 -2.4665 44 1 5.8389 -9.6128 1.1036 45 1 5.1755 -10.4754 2.5258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485593980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:34 Heat of formation + Delta-G solvation = -23.155021 kcal Electronic energy + Delta-G solvation = -26360.541198 eV Core-core repulsion = 22505.380207 eV Total energy + Delta-G solvation = -3855.160992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68155 -39.67483 -38.81637 -37.03657 -35.21002 -33.64202 -32.41014 -30.91582 -29.67823 -28.88408 -27.93567 -26.11926 -25.39598 -23.06414 -22.44661 -21.12185 -20.71475 -20.25386 -20.02214 -17.93324 -17.85359 -17.42742 -16.54058 -16.04628 -16.03088 -15.31824 -15.11389 -14.81802 -14.78569 -14.65544 -14.24265 -14.13537 -13.87057 -13.77885 -13.28541 -13.20408 -12.99140 -12.86605 -12.64971 -12.53353 -12.12962 -11.89053 -11.79535 -11.45155 -11.40066 -11.05535 -10.99978 -10.92475 -10.74625 -10.37844 -10.27968 -9.78744 -9.66624 -9.37763 -9.06040 -8.90500 -8.84469 -8.21169 -6.47910 -6.20046 -3.90304 1.97059 2.77066 2.95777 3.11524 3.20041 3.23030 3.26409 3.30914 3.37056 3.68175 3.80822 3.85023 4.05289 4.22139 4.25153 4.29437 4.44684 4.57658 4.73366 4.84496 4.86918 4.90851 4.99418 5.04048 5.15107 5.15828 5.19784 5.23168 5.33153 5.38311 5.50902 5.60688 5.65908 5.75663 5.81907 5.92492 5.97360 5.99297 6.17338 6.22807 6.30165 6.42205 6.63550 7.61888 7.65988 7.73036 8.37441 8.63194 9.25447 10.87467 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.001838 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.029214 B =15233.766862 C =15880.646574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.155 3.845 15 C -0.132 4.132 16 H 0.105 0.895 17 C -0.156 4.156 18 H 0.123 0.877 19 C 0.048 3.952 20 N -0.477 5.477 21 C 0.036 3.964 22 H 0.118 0.882 23 C -0.126 4.126 24 C 0.094 3.906 25 N -0.733 5.733 26 C 0.490 3.510 27 O -0.522 6.522 28 C 0.044 3.956 29 C -0.149 4.149 30 H 0.124 0.876 31 H 0.268 0.732 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.410 0.590 44 H 0.071 0.929 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.676 -31.756 -2.575 35.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.031 3.969 15 C -0.150 4.150 16 H 0.123 0.877 17 C -0.176 4.176 18 H 0.141 0.859 19 C -0.079 4.079 20 N -0.202 5.202 21 C -0.076 4.076 22 H 0.136 0.864 23 C -0.164 4.164 24 C -0.031 4.031 25 N -0.389 5.389 26 C 0.274 3.726 27 O -0.397 6.397 28 C -0.083 4.083 29 C -0.168 4.168 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.248 0.752 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.453 -31.964 -1.952 34.359 hybrid contribution 3.097 2.076 -0.836 3.821 sum 15.550 -29.887 -2.787 33.806 Atomic orbital electron populations 1.70027 1.05937 1.27328 1.47024 1.24998 0.95038 0.99044 0.94574 0.86111 0.79601 0.81870 0.77880 1.19615 1.20579 1.20566 1.22917 0.94964 0.91643 1.58731 0.90866 1.85381 1.04981 0.96342 1.96711 1.23532 1.06547 0.95334 1.04978 1.20301 0.86480 0.86269 0.75112 1.90699 1.15360 1.85630 1.47617 1.45978 1.10047 1.05242 1.77891 1.20714 0.93695 0.79949 1.02545 1.22702 1.00292 0.91088 1.00960 0.87652 1.23392 1.00030 0.92718 1.01438 0.85900 1.23532 0.94813 0.98207 0.91313 1.67030 1.11503 1.28145 1.13547 1.22779 0.90959 0.94454 0.99437 0.86383 1.22685 1.05012 0.96139 0.92612 1.22233 0.97702 0.84772 0.98369 1.46446 1.57041 1.24845 1.10615 1.21962 0.79410 0.87116 0.84118 1.90775 1.46702 1.25542 1.76653 1.22863 0.96115 0.89747 0.99585 1.23584 0.98035 1.02853 0.92357 0.85810 0.92252 0.89227 0.89167 0.76711 0.91172 0.90950 0.88822 0.92334 0.89197 0.87830 0.89914 0.90601 0.75159 0.91071 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 8 H 0.07 2.01 7.80 -52.48 -0.41 1.61 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 11 C 0.53 10.23 7.85 -10.98 -0.09 10.14 16 12 O -0.52 -12.02 15.86 5.56 0.09 -11.93 16 13 N -0.74 -10.33 5.56 -60.29 -0.33 -10.66 16 14 C 0.16 1.86 5.95 -4.04 -0.02 1.84 16 15 C -0.13 -1.23 5.38 -90.62 -0.49 -1.72 16 16 H 0.11 1.04 8.04 -51.93 -0.42 0.63 16 17 C -0.16 -1.24 6.75 -89.24 -0.60 -1.84 16 18 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 19 C 0.05 0.32 4.42 -0.11 0.00 0.32 16 20 N -0.48 -3.41 5.47 -218.78 -1.20 -4.60 16 21 C 0.04 0.22 3.27 -67.72 -0.22 0.00 16 22 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 23 C -0.13 -0.37 6.45 -25.10 -0.16 -0.53 16 24 C 0.09 0.24 6.83 -3.13 -0.02 0.22 16 25 N -0.73 -3.91 5.63 -59.13 -0.33 -4.25 16 26 C 0.49 4.15 5.98 -10.72 -0.06 4.08 16 27 O -0.52 -6.72 16.27 5.56 0.09 -6.63 16 28 C 0.04 0.38 6.17 -2.18 -0.01 0.37 16 29 C -0.15 -1.31 6.74 -89.24 -0.60 -1.91 16 30 H 0.12 1.07 8.12 -51.93 -0.42 0.65 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 33 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 34 H 0.40 4.61 8.40 -40.82 -0.34 4.26 16 35 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.46 7.44 -51.93 -0.39 0.07 16 38 H 0.06 0.44 5.77 -51.93 -0.30 0.14 16 39 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.10 0.25 8.08 -51.93 -0.42 -0.17 16 41 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.08 0.16 6.58 -51.93 -0.34 -0.18 16 43 H 0.41 1.87 8.96 -40.82 -0.37 1.50 16 44 H 0.07 0.77 5.68 -51.93 -0.29 0.47 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -37.26 376.68 -11.00 -48.27 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.63 Total: 2.20 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.86 Total: -5.15 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.13 Total: -45.23 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.18 Total: -18.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.26 -11.00 -48.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485593980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.110 kcal (2) G-P(sol) polarization free energy of solvation -37.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds