Wall clock time and date at job start Tue Mar 31 2020 23:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.34648 * 125.80394 * 2 1 4 4 H 0.97006 * 124.85244 * 0.02562 * 3 2 1 5 5 C 1.36452 * 110.29720 * 180.30081 * 3 2 1 6 6 C 1.34480 * 108.85670 * 359.72808 * 5 3 2 7 7 C 1.36769 * 125.79546 * 179.83331 * 2 1 3 8 8 C 1.47261 * 126.94586 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00124 * 7.18069 * 8 7 2 10 10 N 1.34774 * 119.99981 * 187.18508 * 8 7 2 11 11 C 1.46507 * 120.00291 * 6.31381 * 10 8 7 12 12 C 1.46503 * 120.00333 * 186.31288 * 10 8 7 13 13 H 1.09001 * 109.46542 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47323 * 240.00310 * 12 10 8 15 15 C 1.52997 * 109.47232 * 119.99863 * 12 10 8 16 16 N 1.46494 * 109.47377 * 305.00117 * 15 12 10 17 17 C 1.34780 * 120.00379 * 179.97438 * 16 15 12 18 18 O 1.21275 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00000 * 179.97438 * 17 16 15 20 20 S 1.81003 * 109.47122 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00328 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99671 * 0.02562 * 21 20 19 23 23 C 1.38790 * 119.99969 * 179.97438 * 21 20 19 24 24 N 1.31635 * 120.00056 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00151 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47083 * 59.99961 * 25 23 21 27 27 H 1.48496 * 109.47435 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46741 * 300.00080 * 25 23 21 29 29 H 1.08994 * 109.46860 * 270.16576 * 1 2 3 30 30 H 1.08995 * 109.46651 * 30.16610 * 1 2 3 31 31 H 1.09005 * 109.47125 * 150.16526 * 1 2 3 32 32 H 1.08001 * 125.56582 * 179.74860 * 5 3 2 33 33 H 1.07999 * 126.83638 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46930 * 275.87449 * 11 10 8 35 35 H 1.09001 * 109.46510 * 35.86672 * 11 10 8 36 36 H 1.08992 * 109.47050 * 155.87071 * 11 10 8 37 37 H 1.08995 * 109.47318 * 179.97438 * 14 12 10 38 38 H 1.09002 * 109.47128 * 299.99914 * 14 12 10 39 39 H 1.09005 * 109.47187 * 59.99396 * 14 12 10 40 40 H 1.08994 * 109.47108 * 65.00501 * 15 12 10 41 41 H 1.09006 * 109.46978 * 185.00023 * 15 12 10 42 42 H 0.97011 * 119.99911 * 0.02562 * 16 15 12 43 43 H 1.08994 * 109.47561 * 300.00465 * 19 17 16 44 44 H 1.09006 * 109.47276 * 60.00447 * 19 17 16 45 45 H 0.97005 * 119.99998 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2948 1.0920 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7272 -0.0067 6 6 3.6882 -0.6153 -0.0051 7 6 2.3070 -1.1093 0.0032 8 6 1.8701 -2.5156 0.0078 9 8 0.6917 -2.7868 -0.1225 10 7 2.7761 -3.5023 0.1566 11 6 4.1735 -3.1754 0.4517 12 6 2.3638 -4.9017 0.0233 13 1 1.2967 -4.9468 -0.1943 14 6 2.6490 -5.6442 1.3303 15 6 3.1455 -5.5574 -1.1168 16 7 2.9673 -4.7765 -2.3434 17 6 3.5685 -5.1675 -3.4846 18 8 4.2566 -6.1660 -3.4961 19 6 3.3846 -4.3645 -4.7465 20 16 4.3095 -5.1400 -6.0953 21 6 3.9284 -4.0272 -7.4071 22 1 3.2910 -3.1748 -7.2241 23 6 4.4483 -4.2454 -8.6754 24 7 5.2257 -5.2841 -8.8982 25 14 4.0450 -3.0653 -10.0660 26 1 4.5202 -1.7033 -9.7130 27 1 4.7187 -3.5171 -11.3098 28 1 2.5758 -3.0368 -10.2805 29 1 -0.3633 0.0030 1.0276 30 1 -0.3632 0.8885 -0.5164 31 1 -0.3634 -0.8915 -0.5113 32 1 4.4498 1.4058 -0.0121 33 1 4.5890 -1.2111 -0.0096 34 1 4.6994 -2.9563 -0.4775 35 1 4.2124 -2.3039 1.1054 36 1 4.6480 -4.0225 0.9468 37 1 2.3419 -6.6853 1.2313 38 1 3.7161 -5.5991 1.5484 39 1 2.0921 -5.1771 2.1426 40 1 4.2039 -5.5920 -0.8587 41 1 2.7767 -6.5709 -1.2745 42 1 2.4171 -3.9776 -2.3342 43 1 2.3262 -4.3306 -5.0046 44 1 3.7527 -3.3507 -4.5889 45 1 5.5894 -5.4364 -9.7845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486807689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:10 Heat of formation + Delta-G solvation = -16.857880 kcal Electronic energy + Delta-G solvation = -27127.656964 eV Core-core repulsion = 23272.769037 eV Total energy + Delta-G solvation = -3854.887927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60180 -39.91310 -38.79091 -36.61806 -34.13127 -32.43801 -32.38133 -31.78730 -30.63879 -29.29611 -27.49598 -26.46764 -25.85351 -25.30746 -23.40948 -21.17561 -20.58107 -20.17752 -18.78447 -17.91307 -17.77714 -16.70069 -16.38425 -16.17476 -15.60355 -15.39589 -14.98644 -14.76884 -14.65628 -14.23801 -14.08083 -13.95711 -13.43311 -13.28920 -13.17743 -13.07509 -12.91477 -12.83357 -12.82161 -12.59687 -12.38117 -12.05001 -11.88682 -11.73943 -11.53809 -11.07517 -11.00872 -11.00282 -10.73429 -9.89063 -9.78439 -9.33919 -9.09302 -9.02532 -8.86604 -8.78438 -8.39567 -8.19062 -6.45042 -6.17739 -3.87704 1.52152 2.17427 2.70947 3.01685 3.12594 3.18933 3.26101 3.30064 3.35733 3.36482 3.81159 4.24474 4.48378 4.55142 4.67158 4.82107 4.92409 4.92737 4.99582 5.05378 5.17173 5.23390 5.24367 5.33647 5.35411 5.40418 5.46046 5.57343 5.59348 5.61501 5.69243 5.77453 5.83040 5.92133 5.96459 6.01044 6.22257 6.38421 6.49111 6.67210 6.72021 7.13512 7.29784 7.63353 7.80278 8.15965 8.39231 8.69847 9.27456 10.89671 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.002968 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.112871 B = 9431.345667 C =11140.892112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.108 3.892 3 N -0.553 5.553 4 H 0.415 0.585 5 C -0.019 4.019 6 C -0.178 4.178 7 C -0.237 4.237 8 C 0.593 3.407 9 O -0.551 6.551 10 N -0.605 5.605 11 C 0.068 3.932 12 C 0.125 3.875 13 H 0.108 0.892 14 C -0.157 4.157 15 C 0.113 3.887 16 N -0.733 5.733 17 C 0.532 3.468 18 O -0.520 6.520 19 C -0.152 4.152 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.398 0.602 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 12.143 25.164 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.011 4.011 3 N -0.148 5.148 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.201 4.201 7 C -0.246 4.246 8 C 0.384 3.616 9 O -0.430 6.430 10 N -0.338 5.338 11 C -0.074 4.074 12 C 0.021 3.979 13 H 0.126 0.874 14 C -0.216 4.216 15 C -0.013 4.013 16 N -0.388 5.388 17 C 0.319 3.681 18 O -0.395 6.395 19 C -0.303 4.303 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.100 10.329 24.952 27.482 hybrid contribution -1.128 2.827 -0.897 3.173 sum -6.228 13.156 24.054 28.115 Atomic orbital electron populations 1.20614 0.87034 1.04601 1.03299 1.20351 0.93704 0.85670 1.01350 1.41648 1.06381 1.08419 1.58373 0.74854 1.21843 0.85597 0.96689 1.10514 1.22752 0.96431 0.93647 1.07305 1.20031 0.93335 0.91798 1.19480 1.17414 0.84750 0.84157 0.75257 1.90727 1.16780 1.84033 1.51503 1.47601 1.09471 1.05489 1.71235 1.22328 0.81747 1.02145 1.01202 1.21364 1.01357 0.80276 0.94860 0.87362 1.22057 1.02437 1.00684 0.96386 1.21653 1.00528 0.95432 0.83639 1.45915 1.53371 1.30442 1.09030 1.20268 0.78664 0.85176 0.84034 1.90690 1.38008 1.25751 1.85035 1.23519 1.05898 1.02999 0.97893 1.85339 1.62741 1.36442 0.98716 1.22839 1.36165 1.13358 0.95988 0.91033 1.24977 0.94591 0.95888 0.98067 1.70014 1.30736 1.26889 1.22740 0.86238 0.78696 0.80456 0.80190 1.19982 1.20812 1.19934 0.90629 0.91769 0.87700 0.81368 0.82266 0.92044 0.89767 0.91136 0.90911 0.91901 0.91769 0.91363 0.90527 0.76809 0.89341 0.89405 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.96 36.01 0.36 -0.44 16 2 C 0.11 1.01 7.17 -81.88 -0.59 0.42 16 3 N -0.55 -3.77 5.90 -9.11 -0.05 -3.83 16 4 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 5 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 6 C -0.18 -1.57 8.84 -37.50 -0.33 -1.90 16 7 C -0.24 -2.58 6.04 -103.35 -0.62 -3.20 16 8 C 0.59 7.25 7.35 -12.59 -0.09 7.16 16 9 O -0.55 -8.05 14.14 5.26 0.07 -7.97 16 10 N -0.61 -6.20 2.24 -175.26 -0.39 -6.59 16 11 C 0.07 0.55 7.77 59.85 0.47 1.01 16 12 C 0.12 1.27 2.79 -67.93 -0.19 1.08 16 13 H 0.11 1.26 6.92 -51.93 -0.36 0.90 16 14 C -0.16 -1.21 9.18 37.16 0.34 -0.87 16 15 C 0.11 1.39 4.97 -4.05 -0.02 1.37 16 16 N -0.73 -11.00 5.39 -60.30 -0.32 -11.32 16 17 C 0.53 10.51 7.85 -10.99 -0.09 10.42 16 18 O -0.52 -12.12 15.86 5.56 0.09 -12.03 16 19 C -0.15 -3.27 6.16 36.00 0.22 -3.04 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.61 9.50 30.94 0.29 -15.31 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 24 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 25 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 1.10 6.35 -51.93 -0.33 0.77 16 32 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.16 1.18 4.81 -52.49 -0.25 0.92 16 34 H 0.06 0.54 7.32 -51.93 -0.38 0.16 16 35 H 0.08 0.59 5.37 -51.93 -0.28 0.31 16 36 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.43 6.67 -51.93 -0.35 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.40 5.64 7.87 -40.82 -0.32 5.32 16 43 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 44 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -37.49 382.87 -8.19 -45.67 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.30 Total: 4.82 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.55 Total: -1.59 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.04 Total: -47.54 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.16 Total: -20.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.49 -8.19 -45.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486807689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.817 kcal (2) G-P(sol) polarization free energy of solvation -37.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds