Wall clock time and date at job start Tue Mar 31 2020 23:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.34648 * 125.80394 * 2 1 4 4 H 0.97006 * 124.85244 * 0.02562 * 3 2 1 5 5 C 1.36452 * 110.29720 * 180.30081 * 3 2 1 6 6 C 1.34480 * 108.85670 * 359.72808 * 5 3 2 7 7 C 1.36769 * 125.79546 * 179.83331 * 2 1 3 8 8 C 1.47261 * 126.94586 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00124 * 7.18069 * 8 7 2 10 10 N 1.34774 * 119.99981 * 187.18508 * 8 7 2 11 11 C 1.46507 * 120.00291 * 6.31381 * 10 8 7 12 12 C 1.46503 * 120.00333 * 186.31288 * 10 8 7 13 13 H 1.09001 * 109.46542 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47323 * 240.00310 * 12 10 8 15 15 C 1.52997 * 109.47232 * 119.99863 * 12 10 8 16 16 N 1.46494 * 109.47377 * 305.00117 * 15 12 10 17 17 C 1.34780 * 120.00379 * 179.97438 * 16 15 12 18 18 O 1.21275 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00000 * 179.97438 * 17 16 15 20 20 S 1.81003 * 109.47122 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00328 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99671 * 0.02562 * 21 20 19 23 23 C 1.38790 * 119.99969 * 179.97438 * 21 20 19 24 24 N 1.31635 * 120.00056 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00151 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47083 * 59.99961 * 25 23 21 27 27 H 1.48496 * 109.47435 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46741 * 300.00080 * 25 23 21 29 29 H 1.08994 * 109.46860 * 270.16576 * 1 2 3 30 30 H 1.08995 * 109.46651 * 30.16610 * 1 2 3 31 31 H 1.09005 * 109.47125 * 150.16526 * 1 2 3 32 32 H 1.08001 * 125.56582 * 179.74860 * 5 3 2 33 33 H 1.07999 * 126.83638 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46930 * 275.87449 * 11 10 8 35 35 H 1.09001 * 109.46510 * 35.86672 * 11 10 8 36 36 H 1.08992 * 109.47050 * 155.87071 * 11 10 8 37 37 H 1.08995 * 109.47318 * 179.97438 * 14 12 10 38 38 H 1.09002 * 109.47128 * 299.99914 * 14 12 10 39 39 H 1.09005 * 109.47187 * 59.99396 * 14 12 10 40 40 H 1.08994 * 109.47108 * 65.00501 * 15 12 10 41 41 H 1.09006 * 109.46978 * 185.00023 * 15 12 10 42 42 H 0.97011 * 119.99911 * 0.02562 * 16 15 12 43 43 H 1.08994 * 109.47561 * 300.00465 * 19 17 16 44 44 H 1.09006 * 109.47276 * 60.00447 * 19 17 16 45 45 H 0.97005 * 119.99998 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2948 1.0920 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7272 -0.0067 6 6 3.6882 -0.6153 -0.0051 7 6 2.3070 -1.1093 0.0032 8 6 1.8701 -2.5156 0.0078 9 8 0.6917 -2.7868 -0.1225 10 7 2.7761 -3.5023 0.1566 11 6 4.1735 -3.1754 0.4517 12 6 2.3638 -4.9017 0.0233 13 1 1.2967 -4.9468 -0.1943 14 6 2.6490 -5.6442 1.3303 15 6 3.1455 -5.5574 -1.1168 16 7 2.9673 -4.7765 -2.3434 17 6 3.5685 -5.1675 -3.4846 18 8 4.2566 -6.1660 -3.4961 19 6 3.3846 -4.3645 -4.7465 20 16 4.3095 -5.1400 -6.0953 21 6 3.9284 -4.0272 -7.4071 22 1 3.2910 -3.1748 -7.2241 23 6 4.4483 -4.2454 -8.6754 24 7 5.2257 -5.2841 -8.8982 25 14 4.0450 -3.0653 -10.0660 26 1 4.5202 -1.7033 -9.7130 27 1 4.7187 -3.5171 -11.3098 28 1 2.5758 -3.0368 -10.2805 29 1 -0.3633 0.0030 1.0276 30 1 -0.3632 0.8885 -0.5164 31 1 -0.3634 -0.8915 -0.5113 32 1 4.4498 1.4058 -0.0121 33 1 4.5890 -1.2111 -0.0096 34 1 4.6994 -2.9563 -0.4775 35 1 4.2124 -2.3039 1.1054 36 1 4.6480 -4.0225 0.9468 37 1 2.3419 -6.6853 1.2313 38 1 3.7161 -5.5991 1.5484 39 1 2.0921 -5.1771 2.1426 40 1 4.2039 -5.5920 -0.8587 41 1 2.7767 -6.5709 -1.2745 42 1 2.4171 -3.9776 -2.3342 43 1 2.3262 -4.3306 -5.0046 44 1 3.7527 -3.3507 -4.5889 45 1 5.5894 -5.4364 -9.7845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486807689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:09 Heat of formation + Delta-G solvation = -43.295250 kcal Electronic energy + Delta-G solvation = -27128.803375 eV Core-core repulsion = 23272.769037 eV Total energy + Delta-G solvation = -3856.034338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25521 -40.96629 -40.11525 -37.61594 -35.33105 -34.59275 -33.38172 -32.42170 -31.45854 -30.75768 -28.21112 -27.74533 -27.11783 -26.70870 -24.21050 -21.82351 -21.72456 -21.37125 -19.83846 -19.52857 -18.53339 -17.85808 -17.57956 -17.44375 -16.88618 -16.58640 -16.37116 -16.32496 -15.79712 -15.36868 -14.97903 -14.85509 -14.77005 -14.51726 -14.20287 -13.95415 -13.93383 -13.88058 -13.66423 -13.43933 -13.37506 -13.18154 -13.06638 -12.87496 -12.84098 -12.60116 -12.51597 -12.26094 -11.87650 -11.74854 -11.13880 -11.00273 -10.79154 -10.31088 -10.14880 -9.78183 -9.65873 -9.04246 -8.67604 -8.35241 -6.13614 0.76043 1.24959 1.43134 1.44960 1.55438 1.57508 1.58111 1.97333 2.25562 2.29327 2.46139 2.54445 2.98524 3.30265 3.61959 3.85956 3.94621 3.98229 4.12656 4.22576 4.25896 4.28764 4.32795 4.37846 4.46034 4.59995 4.65620 4.68141 4.70833 4.73262 4.82261 4.92040 4.97630 5.04316 5.09793 5.26074 5.29643 5.39416 5.40421 5.63831 5.84163 6.02932 6.18747 6.38457 6.46981 6.68692 7.05644 7.17080 7.29358 8.73818 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.002968 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.112871 B = 9431.345667 C =11140.892112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.097 3.903 3 N -0.540 5.540 4 H 0.431 0.569 5 C -0.010 4.010 6 C -0.197 4.197 7 C -0.268 4.268 8 C 0.584 3.416 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.066 3.934 12 C 0.132 3.868 13 H 0.092 0.908 14 C -0.150 4.150 15 C 0.112 3.888 16 N -0.711 5.711 17 C 0.537 3.463 18 O -0.560 6.560 19 C -0.131 4.131 20 S -0.139 6.139 21 C -0.551 4.551 22 H 0.079 0.921 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.276 1.276 28 H -0.264 1.264 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.201 0.799 33 H 0.169 0.831 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.404 0.596 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 14.611 26.056 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 N -0.137 5.137 4 H 0.270 0.730 5 C -0.137 4.137 6 C -0.220 4.220 7 C -0.278 4.278 8 C 0.377 3.623 9 O -0.468 6.468 10 N -0.335 5.335 11 C -0.075 4.075 12 C 0.028 3.972 13 H 0.110 0.890 14 C -0.208 4.208 15 C -0.012 4.012 16 N -0.364 5.364 17 C 0.322 3.678 18 O -0.438 6.438 19 C -0.282 4.282 20 S 0.088 5.912 21 C -0.699 4.699 22 H 0.097 0.903 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.201 1.201 28 H -0.188 1.188 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.218 0.782 33 H 0.187 0.813 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.240 0.760 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.192 12.833 25.895 29.364 hybrid contribution -1.122 2.094 -1.048 2.597 sum -6.315 14.927 24.848 29.667 Atomic orbital electron populations 1.20552 0.86634 1.04315 1.03669 1.20522 0.94276 0.86221 1.01269 1.41665 1.06152 1.08741 1.57110 0.72965 1.22374 0.86316 0.96696 1.08350 1.22944 0.95910 0.94659 1.08441 1.20177 0.94856 0.91428 1.21348 1.17767 0.84529 0.85139 0.74854 1.90702 1.18163 1.84638 1.53284 1.47673 1.10171 1.05112 1.70553 1.22462 0.80343 1.03450 1.01290 1.21280 0.99970 0.80647 0.95275 0.88979 1.22011 1.03367 1.00814 0.94603 1.21860 1.01291 0.95227 0.82811 1.45735 1.51682 1.30350 1.08625 1.19950 0.78750 0.84474 0.84598 1.90679 1.40117 1.27368 1.85614 1.23357 1.05322 1.03227 0.96273 1.85457 1.64928 1.38727 1.02098 1.23170 1.36576 1.13571 0.96573 0.90276 1.26106 0.94030 0.97749 1.01013 1.70171 1.31863 1.28954 1.23626 0.85020 0.78881 0.78015 0.76176 1.18612 1.20093 1.18834 0.89952 0.89560 0.90368 0.78173 0.81341 0.92705 0.88504 0.89555 0.89890 0.90553 0.91664 0.90785 0.90602 0.76049 0.88114 0.87804 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.96 71.24 0.71 -0.77 16 2 C 0.10 1.71 7.17 41.79 0.30 2.01 16 3 N -0.54 -6.10 5.90 -182.72 -1.08 -7.18 16 4 H 0.43 1.95 8.96 -92.70 -0.83 1.12 16 5 C -0.01 -0.11 11.89 83.11 0.99 0.88 16 6 C -0.20 -3.13 8.84 23.62 0.21 -2.92 16 7 C -0.27 -5.64 6.04 -19.04 -0.12 -5.75 16 8 C 0.58 14.27 7.35 86.62 0.64 14.90 16 9 O -0.59 -17.57 14.14 -4.11 -0.06 -17.63 16 10 N -0.60 -11.89 2.24 -826.65 -1.86 -13.74 16 11 C 0.07 0.96 7.77 127.77 0.99 1.96 16 12 C 0.13 2.58 2.79 44.99 0.13 2.71 16 13 H 0.09 2.15 6.92 -2.39 -0.02 2.14 16 14 C -0.15 -2.05 9.18 71.98 0.66 -1.39 16 15 C 0.11 2.68 4.97 86.38 0.43 3.11 16 16 N -0.71 -20.96 5.39 -463.09 -2.50 -23.46 16 17 C 0.54 21.17 7.85 87.65 0.69 21.86 16 18 O -0.56 -26.46 15.86 -3.01 -0.05 -26.51 16 19 C -0.13 -5.59 6.16 71.23 0.44 -5.15 16 20 S -0.14 -7.94 20.57 -56.49 -1.16 -9.10 16 21 C -0.55 -32.32 9.50 67.95 0.65 -31.67 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.02 0.93 5.49 84.85 0.47 1.39 16 24 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 25 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.69 6.35 -2.38 -0.02 1.68 16 32 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.17 2.20 4.81 -2.91 -0.01 2.18 16 34 H 0.05 0.89 7.32 -2.39 -0.02 0.87 16 35 H 0.10 1.18 5.37 -2.39 -0.01 1.17 16 36 H 0.09 0.97 6.44 -2.39 -0.02 0.95 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.86 6.67 -2.39 -0.02 0.84 16 39 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 41 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.40 11.23 7.87 -92.70 -0.73 10.50 16 43 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 45 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -83.38 382.87 2.27 -81.11 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.52 Total: 25.27 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.17 Total: 1.15 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -5.14 Total: -100.52 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.11 Total: -44.14 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -83.38 2.27 -81.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486807689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.811 kcal (2) G-P(sol) polarization free energy of solvation -83.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds