Wall clock time and date at job start Tue Mar 31 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00421 * 2 1 4 4 H 1.48500 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47110 * 299.99858 * 3 2 1 6 6 H 1.48497 * 109.46803 * 60.00010 * 3 2 1 7 7 C 1.38807 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00206 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99580 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99601 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47198 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99821 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00256 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00009 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47249 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.50363 * 54.99796 * 15 14 13 17 17 C 1.53119 * 109.50349 * 294.92003 * 15 14 13 18 18 C 1.53115 * 109.16284 * 182.36387 * 17 15 14 19 19 C 1.53040 * 109.27691 * 57.65464 * 18 17 15 20 20 N 1.46843 * 109.52392 * 300.82256 * 19 18 17 21 21 C 1.46900 * 111.00190 * 185.84009 * 20 19 18 22 22 C 1.50704 * 109.47010 * 66.04310 * 21 20 19 23 23 C 1.41380 * 126.79860 * 94.71306 * 22 21 20 24 24 C 1.35462 * 103.98236 * 179.88947 * 23 22 21 25 25 O 1.34041 * 106.44534 * 0.36704 * 24 23 22 26 26 N 1.20926 * 111.56565 * 359.75217 * 25 24 23 27 27 C 1.46846 * 111.20060 * 61.74295 * 20 19 18 28 28 H 0.97006 * 120.00247 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47706 * 59.99913 * 10 9 7 30 30 H 1.09004 * 109.47614 * 299.99727 * 10 9 7 31 31 H 0.96995 * 119.99769 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47449 * 59.99610 * 14 13 11 33 33 H 1.09004 * 109.47181 * 299.99835 * 14 13 11 34 34 H 1.09003 * 109.52152 * 302.27160 * 17 15 14 35 35 H 1.08999 * 109.52204 * 62.39215 * 17 15 14 36 36 H 1.09001 * 109.50414 * 177.59756 * 18 17 15 37 37 H 1.08999 * 109.50578 * 297.71448 * 18 17 15 38 38 H 1.08997 * 109.46185 * 60.83867 * 19 18 17 39 39 H 1.08998 * 109.45918 * 180.81561 * 19 18 17 40 40 H 1.08995 * 109.47103 * 186.04094 * 21 20 19 41 41 H 1.08998 * 109.46780 * 306.04650 * 21 20 19 42 42 H 1.07995 * 128.00922 * 0.02562 * 23 22 21 43 43 H 1.07999 * 126.77159 * 180.09891 * 24 23 22 44 44 H 1.08996 * 109.46322 * 178.24672 * 27 20 19 45 45 H 1.08991 * 109.46240 * 58.27106 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3433 0.0003 14 6 2.3300 -7.7151 0.0003 15 6 3.5020 -8.6987 0.0001 16 1 4.1596 -8.4812 0.8417 17 6 4.2844 -8.5614 -1.3089 18 6 5.4192 -9.5892 -1.3262 19 6 4.8319 -10.9931 -1.1646 20 7 4.0940 -11.0735 0.1024 21 6 3.6333 -12.4449 0.3573 22 6 4.8240 -13.3418 0.5784 23 6 5.3960 -13.6993 1.8209 24 6 6.4260 -14.5124 1.4853 25 8 6.4271 -14.5909 0.1472 26 7 5.5331 -13.9363 -0.3372 27 6 2.9702 -10.1285 0.1233 28 1 -0.4851 0.8401 -0.0004 29 1 3.1243 -3.7315 0.8905 30 1 3.1242 -3.7315 -0.8895 31 1 3.8005 -6.1837 0.0006 32 1 1.7216 -7.8753 -0.8899 33 1 1.7210 -7.8751 0.8901 34 1 3.6176 -8.7407 -2.1523 35 1 4.7006 -7.5566 -1.3808 36 1 5.9537 -9.5252 -2.2740 37 1 6.1071 -9.3858 -0.5055 38 1 4.1548 -11.2011 -1.9930 39 1 5.6386 -11.7261 -1.1620 40 1 3.0001 -12.4564 1.2444 41 1 3.0636 -12.8021 -0.5005 42 1 5.0827 -13.3962 2.8090 43 1 7.1136 -14.9978 2.1621 44 1 2.4247 -10.2335 1.0611 45 1 2.3019 -10.3405 -0.7111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491087946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:46 Heat of formation + Delta-G solvation = -3.977801 kcal Electronic energy + Delta-G solvation = -25923.837474 eV Core-core repulsion = 22069.508069 eV Total energy + Delta-G solvation = -3854.329405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.84923 -40.89474 -39.99933 -36.87797 -35.30003 -34.58137 -33.61428 -32.64661 -32.45357 -30.65808 -28.29887 -27.70893 -26.63848 -24.33553 -24.02775 -22.90213 -21.76971 -21.62214 -20.72157 -19.81049 -18.62035 -18.56450 -17.80861 -17.37625 -16.87906 -16.80054 -16.56451 -16.24377 -16.05711 -15.71339 -15.38669 -15.16078 -14.82349 -14.70831 -14.37594 -14.23389 -14.01460 -13.86662 -13.47391 -13.19258 -13.15225 -13.04417 -12.98159 -12.90100 -12.58375 -12.19816 -12.12495 -11.72522 -11.66972 -11.49258 -11.39969 -11.15499 -11.07373 -10.93149 -10.50198 -10.26504 -10.09669 -9.44141 -8.66048 -8.34431 -6.12278 0.65178 1.26858 1.30387 1.41811 1.48003 1.59062 1.63053 2.25727 2.29953 2.50856 2.88542 2.99892 3.29326 3.33067 3.59529 3.66519 3.78637 3.85658 4.00273 4.11618 4.24214 4.30675 4.32616 4.38467 4.40465 4.48290 4.52240 4.53326 4.55206 4.65822 4.68889 4.74480 4.86192 4.87515 4.96075 5.04168 5.11924 5.20270 5.22800 5.36905 5.42761 5.49061 5.92333 5.97976 6.20558 6.51695 7.07115 7.25866 7.38173 8.75061 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.001610 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.929259 B =17389.238123 C =17662.180027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.129 3.871 15 C -0.079 4.079 16 H 0.095 0.905 17 C -0.117 4.117 18 C -0.109 4.109 19 C 0.055 3.945 20 N -0.532 5.532 21 C 0.131 3.869 22 C 0.011 3.989 23 C -0.230 4.230 24 C -0.048 4.048 25 O 0.083 5.917 26 N -0.398 5.398 27 C 0.066 3.934 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.415 0.585 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.045 0.955 42 H 0.192 0.808 43 H 0.258 0.742 44 H 0.094 0.906 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.885 -30.408 3.528 34.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.364 5.364 14 C 0.005 3.995 15 C -0.098 4.098 16 H 0.113 0.887 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.072 4.072 20 N -0.257 5.257 21 C 0.003 3.997 22 C -0.147 4.147 23 C -0.252 4.252 24 C -0.129 4.129 25 O 0.018 5.982 26 N -0.104 5.104 27 C -0.062 4.062 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.209 0.791 43 H 0.274 0.726 44 H 0.113 0.887 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.025 -30.602 2.555 34.187 hybrid contribution 1.069 1.178 0.056 1.591 sum 16.094 -29.424 2.612 33.639 Atomic orbital electron populations 1.70187 1.07982 1.28538 1.48082 1.26128 0.95961 1.03318 0.93750 0.84902 0.78620 0.76335 0.78065 1.18017 1.19967 1.19923 1.23249 0.95371 0.92006 1.58753 0.89881 1.85577 1.10644 0.99268 1.97046 1.23377 1.03515 0.94409 1.06812 1.20047 0.86209 0.86676 0.75133 1.90693 1.17460 1.86135 1.50288 1.45712 1.10232 1.05062 1.75389 1.21323 0.96491 0.79894 1.01812 1.21256 0.95788 0.93092 0.99708 0.88706 1.21670 0.97295 0.99860 0.96665 1.21520 0.97751 0.92934 1.02461 1.22110 0.97504 0.98318 0.89316 1.61841 1.25227 1.04525 1.34119 1.20408 0.90856 0.85608 1.02828 1.23730 1.00142 1.00340 0.90496 1.23061 0.98788 1.02936 1.00391 1.26847 1.01331 1.00724 0.84013 1.84792 1.39673 1.52136 1.21592 1.73862 1.01708 1.10238 1.24612 1.22007 0.91297 0.90581 1.02324 0.92001 0.87151 0.87260 0.74759 0.92631 0.91774 0.92511 0.90757 0.90785 0.91022 0.95542 0.91600 0.86392 0.93707 0.79081 0.72616 0.88749 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.58 29.55 68.60 2.03 45.60 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.18 9.50 67.96 0.65 -30.54 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.45 7.85 87.66 0.69 20.13 16 12 O -0.57 -26.23 15.86 -3.05 -0.05 -26.28 16 13 N -0.71 -17.26 5.31 -463.06 -2.46 -19.72 16 14 C 0.13 2.72 5.07 86.38 0.44 3.15 16 15 C -0.08 -1.17 2.39 -10.74 -0.03 -1.20 16 16 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 17 C -0.12 -1.73 5.13 30.67 0.16 -1.57 16 18 C -0.11 -1.56 6.09 30.65 0.19 -1.38 16 19 C 0.06 0.92 5.31 86.33 0.46 1.37 16 20 N -0.53 -7.89 4.65 -900.96 -4.19 -12.07 16 21 C 0.13 1.78 5.56 85.56 0.48 2.25 16 22 C 0.01 0.17 6.07 43.58 0.26 0.44 16 23 C -0.23 -2.23 11.12 22.40 0.25 -1.98 16 24 C -0.05 -0.35 12.30 67.18 0.83 0.48 16 25 O 0.08 1.22 11.20 71.62 0.80 2.03 16 26 N -0.40 -7.42 10.93 -49.55 -0.54 -7.96 16 27 C 0.07 0.92 4.75 86.33 0.41 1.33 16 28 H 0.27 15.42 8.31 -92.70 -0.77 14.64 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.11 3.85 8.14 -2.39 -0.02 3.84 16 31 H 0.42 7.37 7.68 -92.71 -0.71 6.66 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.03 7.26 -2.39 -0.02 1.01 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 1.26 6.26 -2.39 -0.01 1.25 16 40 H 0.12 1.10 7.98 -2.39 -0.02 1.08 16 41 H 0.04 0.67 8.12 -2.39 -0.02 0.65 16 42 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.26 -0.76 8.06 -2.91 -0.02 -0.78 16 44 H 0.09 1.11 8.01 -2.39 -0.02 1.09 16 45 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -80.44 384.35 0.68 -79.76 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.28 Total: 15.02 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.68 Total: -10.96 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -6.90 Total: -95.53 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.75 Total: -24.25 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -80.44 0.68 -79.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491087946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.778 kcal (2) G-P(sol) polarization free energy of solvation -80.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds