Wall clock time and date at job start Tue Mar 31 2020 23:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34478 * 125.57516 * 2 1 4 4 C 1.46690 * 106.33244 * 180.02562 * 3 2 1 5 5 C 1.47265 * 126.94200 * 180.02562 * 4 3 2 6 6 O 1.21628 * 120.00319 * 180.30055 * 5 4 3 7 7 N 1.34784 * 119.99868 * 0.02939 * 5 4 3 8 8 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.34774 * 120.00391 * 179.97438 * 10 9 8 12 12 O 1.21292 * 119.99688 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00381 * 180.02562 * 11 10 9 14 14 S 1.81008 * 109.46991 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99845 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99670 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99898 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99937 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47103 * 90.00425 * 19 17 15 21 21 H 1.48500 * 109.46954 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.47129 * 330.00333 * 19 17 15 23 23 C 1.36760 * 106.11650 * 0.26441 * 4 3 2 24 24 C 1.50700 * 125.80347 * 179.69693 * 23 4 3 25 25 N 1.34660 * 108.39807 * 359.57273 * 23 4 3 26 26 C 1.46497 * 124.85322 * 180.16768 * 25 23 4 27 27 H 1.09005 * 109.46719 * 89.97138 * 1 2 3 28 28 H 1.08996 * 109.47473 * 209.97182 * 1 2 3 29 29 H 1.08997 * 109.47182 * 329.97683 * 1 2 3 30 30 H 1.07997 * 126.83600 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00044 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.47024 * 300.00310 * 8 7 5 33 33 H 1.09005 * 109.47136 * 59.99926 * 8 7 5 34 34 H 1.09004 * 109.47330 * 300.00096 * 9 8 7 35 35 H 1.09005 * 109.47124 * 59.99892 * 9 8 7 36 36 H 0.96999 * 119.99984 * 0.02562 * 10 9 8 37 37 H 1.08997 * 109.46878 * 299.99564 * 13 11 10 38 38 H 1.09000 * 109.46859 * 60.00097 * 13 11 10 39 39 H 0.97005 * 120.00072 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47065 * 90.02579 * 24 23 4 41 41 H 1.08992 * 109.47506 * 210.02404 * 24 23 4 42 42 H 1.09002 * 109.47252 * 330.03286 * 24 23 4 43 43 H 1.08999 * 109.47627 * 270.33837 * 26 25 23 44 44 H 1.08998 * 109.47178 * 30.33823 * 26 25 23 45 45 H 1.09006 * 109.46908 * 150.33850 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6103 -0.0006 5 6 4.8978 1.4299 -0.0003 6 8 5.9893 0.8933 -0.0065 7 7 4.8081 2.7747 0.0012 8 6 6.0253 3.5901 0.0021 9 6 5.6462 5.0723 0.0044 10 7 6.8634 5.8876 0.0047 11 6 6.7738 7.2324 0.0061 12 8 5.6853 7.7676 0.0067 13 6 8.0258 8.0711 0.0057 14 16 7.5773 9.8247 0.0072 15 6 9.1827 10.5510 0.0057 16 1 10.0602 9.9214 0.0048 17 6 9.3194 11.9322 0.0058 18 7 8.2499 12.6995 0.0073 19 14 11.0214 12.7023 0.0050 20 1 11.4716 12.9065 -1.3953 21 1 10.9729 14.0109 0.7052 22 1 11.9726 11.8015 0.7044 23 6 3.5997 -0.7552 -0.0070 24 6 4.7720 -1.7021 -0.0165 25 7 2.3007 -1.1099 -0.0006 26 6 1.8097 -2.4902 -0.0010 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 1.9630 2.1233 0.0004 31 1 3.9377 3.2028 0.0017 32 1 6.6132 3.3643 0.8918 33 1 6.6131 3.3664 -0.8882 34 1 5.0581 5.2984 -0.8851 35 1 5.0586 5.2957 0.8949 36 1 7.7338 5.4596 0.0030 37 1 8.6144 7.8455 0.8950 38 1 8.6128 7.8472 -0.8850 39 1 8.3455 13.6648 0.0077 40 1 5.0586 -1.9358 1.0089 41 1 4.4935 -2.6200 -0.5340 42 1 5.6120 -1.2353 -0.5310 43 1 1.6880 -2.8324 -1.0287 44 1 2.5265 -3.1309 0.5127 45 1 0.8494 -2.5343 0.5128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491124510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:08 Heat of formation + Delta-G solvation = -36.870657 kcal Electronic energy + Delta-G solvation = -25174.845226 eV Core-core repulsion = 21319.089479 eV Total energy + Delta-G solvation = -3855.755746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85086 -39.53840 -38.98657 -35.83021 -33.94503 -33.22631 -33.03146 -32.41315 -30.30641 -29.55041 -28.31307 -26.75825 -25.47340 -25.15852 -23.06518 -22.00164 -20.64861 -20.10233 -19.24044 -17.84836 -17.35649 -16.46512 -16.30271 -16.10732 -15.92347 -15.66252 -15.35266 -14.89617 -14.78643 -14.62439 -13.98742 -13.91144 -13.73527 -13.68009 -13.47445 -13.41013 -13.13178 -12.92806 -12.86580 -12.64015 -12.54312 -12.32756 -12.10111 -11.94234 -11.78825 -11.59230 -11.04687 -11.00813 -10.74989 -10.06660 -9.80262 -9.43924 -9.31590 -9.05767 -8.95523 -8.92147 -8.35366 -8.22500 -6.48583 -6.20169 -3.90716 1.44312 1.98941 2.30571 2.80716 3.08528 3.21521 3.24151 3.30932 3.35774 3.41848 3.85624 4.19843 4.22013 4.26517 4.39895 4.52406 4.53945 4.67495 4.83016 4.87446 4.93453 4.94947 5.07898 5.15146 5.17107 5.21544 5.29117 5.30705 5.38254 5.48558 5.61384 5.64834 5.73505 5.81341 5.91465 5.92183 6.15949 6.22944 6.43937 6.56072 6.68630 6.83198 7.38300 7.61291 7.67210 8.15223 8.36916 8.58801 9.25292 10.87271 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.001486 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.810925 B =18841.555071 C =19627.702972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.010 3.990 3 C -0.165 4.165 4 C -0.236 4.236 5 C 0.595 3.405 6 O -0.551 6.551 7 N -0.724 5.724 8 C 0.112 3.888 9 C 0.111 3.889 10 N -0.736 5.736 11 C 0.534 3.466 12 O -0.517 6.517 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.107 3.893 24 C -0.094 4.094 25 N -0.442 5.442 26 C 0.065 3.935 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.403 0.597 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.189 -33.386 0.002 36.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.189 4.189 4 C -0.246 4.246 5 C 0.385 3.615 6 O -0.431 6.431 7 N -0.376 5.376 8 C -0.012 4.012 9 C -0.014 4.014 10 N -0.392 5.392 11 C 0.320 3.680 12 O -0.391 6.391 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.010 4.010 24 C -0.151 4.151 25 N -0.119 5.119 26 C -0.077 4.077 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.238 0.762 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.459 -32.993 0.010 36.436 hybrid contribution 2.216 -0.108 -0.004 2.218 sum -13.244 -33.101 0.006 35.652 Atomic orbital electron populations 1.20342 0.87743 1.03325 1.02755 1.20223 0.93597 0.85481 1.10429 1.21798 0.90792 0.97738 1.08539 1.20005 0.92788 0.92170 1.19614 1.17286 0.87802 0.81268 0.75186 1.90738 1.28695 1.72361 1.51274 1.45541 1.09593 1.05967 1.76450 1.21405 0.87610 0.89050 1.03171 1.21326 0.88530 0.88446 1.03102 1.45804 1.08905 1.06258 1.78197 1.20317 0.91289 0.81377 0.75017 1.90708 1.29126 1.71792 1.47444 1.23530 0.97908 1.03850 1.05096 1.85389 1.11581 0.89678 1.96732 1.22876 0.92390 0.94197 1.58934 0.90880 1.24987 0.97957 0.96085 0.94520 1.70018 1.28459 1.04942 1.46895 0.86165 0.82477 0.78496 0.78346 1.20274 1.20762 1.19686 1.20285 0.84616 0.94074 1.01996 1.20571 0.94660 0.96504 1.03388 1.43479 1.05159 1.06515 1.56783 1.22091 1.01608 0.80367 1.03585 0.90940 0.91844 0.89882 0.83607 0.76245 0.90762 0.90750 0.90969 0.90962 0.76495 0.89069 0.89069 0.92193 0.90485 0.91959 0.87955 0.90609 0.89548 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.06 36.01 0.36 0.02 16 2 C 0.01 0.07 6.85 -81.87 -0.56 -0.49 16 3 C -0.16 -1.39 10.45 -37.50 -0.39 -1.79 16 4 C -0.24 -2.47 6.29 -103.35 -0.65 -3.12 16 5 C 0.60 7.06 7.81 -12.59 -0.10 6.96 16 6 O -0.55 -7.98 14.81 5.25 0.08 -7.91 16 7 N -0.72 -7.07 5.55 -61.43 -0.34 -7.41 16 8 C 0.11 1.11 5.79 -4.05 -0.02 1.08 16 9 C 0.11 1.25 5.79 -4.05 -0.02 1.23 16 10 N -0.74 -9.71 5.56 -60.29 -0.33 -10.04 16 11 C 0.53 9.91 7.85 -10.99 -0.09 9.82 16 12 O -0.52 -11.65 15.86 5.55 0.09 -11.56 16 13 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 16 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 19 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 C 0.11 0.98 6.89 -81.89 -0.56 0.41 16 24 C -0.09 -0.71 9.26 36.01 0.33 -0.37 16 25 N -0.44 -3.13 3.09 -115.28 -0.36 -3.48 16 26 C 0.07 0.20 10.39 59.85 0.62 0.82 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.18 6.94 -51.93 -0.36 -0.18 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.15 0.95 7.69 -52.49 -0.40 0.55 16 31 H 0.40 3.14 7.60 -40.82 -0.31 2.83 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 4.14 8.47 -40.82 -0.35 3.80 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.31 7.59 -51.93 -0.39 -0.08 16 42 H 0.10 0.98 6.47 -51.93 -0.34 0.64 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.09 0.17 7.51 -51.93 -0.39 -0.22 16 45 H 0.09 0.13 6.90 -51.93 -0.36 -0.22 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -38.24 394.82 -8.75 -46.98 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.67 Total: 1.64 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.66 Total: -1.29 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.30 Total: -46.43 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.17 Total: -19.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.24 -8.75 -46.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491124510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.114 kcal (2) G-P(sol) polarization free energy of solvation -38.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds