Wall clock time and date at job start Tue Mar 31 2020 22:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00301 * 2 1 4 4 H 1.48494 * 109.47147 * 239.99825 * 3 2 1 5 5 H 1.48503 * 109.46777 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47582 * 119.99463 * 3 2 1 7 7 C 1.38802 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99996 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46870 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00192 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99615 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.62956 * 5.39494 * 13 11 10 15 15 C 1.53191 * 108.77412 * 126.41586 * 14 13 11 16 16 C 1.53045 * 109.30847 * 54.63423 * 15 14 13 17 17 C 1.53075 * 109.66034 * 298.69701 * 16 15 14 18 18 C 1.46923 * 120.62735 * 185.42264 * 13 11 10 19 19 H 1.08997 * 109.58859 * 113.65377 * 18 13 11 20 20 C 1.53002 * 109.58694 * 353.36900 * 18 13 11 21 21 N 1.46903 * 109.46759 * 180.02562 * 20 18 13 22 22 C 1.46900 * 110.99629 * 174.99420 * 21 20 18 23 23 C 1.50705 * 109.46993 * 180.02562 * 22 21 20 24 24 C 1.41377 * 126.80390 * 94.70814 * 23 22 21 25 25 C 1.35447 * 103.98428 * 180.26181 * 24 23 22 26 26 O 1.34031 * 106.44999 * 0.02562 * 25 24 23 27 27 N 1.20921 * 111.56883 * 359.97438 * 26 25 24 28 28 H 0.97001 * 119.99399 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47454 * 59.99430 * 10 9 7 30 30 H 1.09004 * 109.46632 * 299.99855 * 10 9 7 31 31 H 1.09004 * 109.58522 * 246.20441 * 14 13 11 32 32 H 1.08997 * 109.58875 * 6.62932 * 14 13 11 33 33 H 1.08994 * 109.50086 * 174.58007 * 15 14 13 34 34 H 1.08994 * 109.49683 * 294.65470 * 15 14 13 35 35 H 1.08993 * 109.46470 * 58.65942 * 16 15 14 36 36 H 1.09005 * 109.45814 * 178.61732 * 16 15 14 37 37 H 1.09003 * 109.38987 * 301.27845 * 17 16 15 38 38 H 1.08999 * 109.62517 * 181.17504 * 17 16 15 39 39 H 1.08998 * 109.46756 * 60.00622 * 20 18 13 40 40 H 1.08990 * 109.47210 * 300.00255 * 20 18 13 41 41 H 1.00896 * 111.00573 * 298.94615 * 21 20 18 42 42 H 1.09000 * 109.47449 * 60.00096 * 22 21 20 43 43 H 1.09003 * 109.46999 * 300.00129 * 22 21 20 44 44 H 1.08007 * 128.00476 * 0.24199 * 24 23 22 45 45 H 1.08009 * 126.77651 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8441 -6.3432 0.0022 14 6 4.2915 -6.1209 0.1220 15 6 4.8256 -6.9657 1.2830 16 6 4.4299 -8.4284 1.0684 17 6 2.9042 -8.5509 1.0439 18 6 2.3484 -7.7211 -0.1177 19 1 2.6810 -8.1481 -1.0637 20 6 0.8194 -7.7226 -0.0636 21 7 0.3266 -9.1014 -0.1830 22 6 -1.1319 -9.1555 -0.0163 23 6 -1.5995 -10.5824 -0.1443 24 6 -1.8177 -11.4999 0.9090 25 6 -2.2202 -12.6301 0.2804 26 8 -2.2231 -12.3545 -1.0313 27 7 -1.8768 -11.2161 -1.2471 28 1 -0.4849 0.8401 -0.0004 29 1 3.1238 -3.7310 0.8924 30 1 3.1251 -3.7317 -0.8875 31 1 4.7847 -6.4183 -0.8035 32 1 4.4842 -5.0663 0.3187 33 1 5.9118 -6.8848 1.3222 34 1 4.3999 -6.6069 2.2200 35 1 4.8356 -8.7790 0.1195 36 1 4.8297 -9.0357 1.8806 37 1 2.4962 -8.1799 1.9841 38 1 2.6229 -9.5957 0.9119 39 1 0.4262 -7.1235 -0.8849 40 1 0.4889 -7.3000 0.8852 41 1 0.6054 -9.5102 -1.0623 42 1 -1.6082 -8.5463 -0.7845 43 1 -1.3994 -8.7727 0.9686 44 1 -1.6922 -11.3372 1.9693 45 1 -2.4855 -13.5687 0.7445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491242219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:50 Heat of formation + Delta-G solvation = 39.798302 kcal Electronic energy + Delta-G solvation = -26839.912171 eV Core-core repulsion = 22987.481040 eV Total energy + Delta-G solvation = -3852.431131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.12204 -40.35374 -37.23704 -36.60661 -34.13316 -32.85601 -32.44325 -32.02261 -31.38718 -29.02210 -27.43559 -25.55023 -24.88494 -24.14838 -23.31263 -21.78658 -21.17213 -20.94718 -19.03633 -18.05858 -17.73422 -17.58430 -16.68670 -15.99507 -15.61431 -15.41393 -15.23877 -14.82096 -14.50654 -14.45097 -14.20325 -13.91391 -13.80264 -13.61108 -13.31544 -13.02057 -12.83930 -12.53584 -12.37343 -12.15083 -12.03815 -11.76873 -11.41301 -11.08862 -11.06046 -11.05005 -11.03000 -10.78135 -10.76181 -10.61360 -10.36848 -9.87426 -9.82577 -9.16275 -9.07361 -8.52963 -8.25488 -8.19031 -6.51733 -6.23191 -3.93790 1.29815 2.00938 2.88758 3.00628 3.06296 3.22144 3.23841 3.27653 3.54325 3.92855 4.18926 4.29276 4.43198 4.63044 4.71570 4.76172 4.92605 4.95660 5.05738 5.10739 5.11997 5.17428 5.22232 5.26464 5.39029 5.48994 5.53984 5.56820 5.63122 5.65730 5.80142 5.83511 5.84576 5.87159 5.92571 6.02585 6.07952 6.11051 6.17838 6.31412 6.67231 6.90319 7.23754 7.56392 7.58298 8.06926 8.33361 8.54514 9.22106 10.84157 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.002485 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.158245 B =11264.524844 C =13013.737607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.615 5.615 14 C 0.109 3.891 15 C -0.136 4.136 16 C -0.121 4.121 17 C -0.119 4.119 18 C 0.154 3.846 19 H 0.064 0.936 20 C 0.067 3.933 21 N -0.690 5.690 22 C 0.141 3.859 23 C 0.024 3.976 24 C -0.217 4.217 25 C -0.067 4.067 26 O 0.098 5.902 27 N -0.364 5.364 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.336 0.664 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.171 0.829 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 -24.438 2.841 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.323 3.677 12 O -0.388 6.388 13 N -0.352 5.352 14 C -0.014 4.014 15 C -0.174 4.174 16 C -0.158 4.158 17 C -0.158 4.158 18 C 0.050 3.950 19 H 0.082 0.918 20 C -0.061 4.061 21 N -0.324 5.324 22 C 0.011 3.989 23 C -0.135 4.135 24 C -0.239 4.239 25 C -0.149 4.149 26 O 0.031 5.969 27 N -0.068 5.068 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.189 0.811 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.097 -24.384 2.200 24.678 hybrid contribution 1.898 1.565 0.179 2.466 sum 4.995 -22.819 2.378 23.480 Atomic orbital electron populations 1.70008 1.05946 1.27564 1.46780 1.24988 0.95026 0.99012 0.94526 0.86232 0.79255 0.81265 0.78809 1.19940 1.20804 1.19923 1.22816 0.94840 0.91657 1.59062 0.91021 1.85349 1.05005 0.96340 1.96704 1.23593 1.06465 0.95558 1.04618 1.20334 0.86275 0.86148 0.74928 1.90696 1.15446 1.84400 1.48281 1.48163 1.06893 1.05485 1.74655 1.21719 0.80059 1.01242 0.98374 1.21927 1.00771 0.95688 0.99033 1.21551 0.96408 0.96160 1.01717 1.21870 0.94573 1.00740 0.98586 1.21108 0.94250 0.81505 0.98127 0.91782 1.22669 0.92694 0.86005 1.04715 1.60538 1.09955 1.21618 1.40304 1.20102 0.88488 0.87210 1.03084 1.23645 1.01897 0.99392 0.88542 1.22747 1.06471 0.92724 1.01907 1.26007 1.03567 1.01837 0.83475 1.84833 1.63085 1.23393 1.25629 1.73867 1.16239 0.92276 1.24397 0.92130 0.89348 0.89378 0.91603 0.89210 0.90888 0.91319 0.92100 0.91903 0.91673 0.90026 0.91815 0.89035 0.84719 0.93022 0.88566 0.81106 0.76847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.03 4.56 36.01 0.16 -2.86 16 11 C 0.53 9.78 7.63 -10.98 -0.08 9.69 16 12 O -0.51 -10.80 11.27 5.56 0.06 -10.73 16 13 N -0.62 -8.58 2.97 -165.22 -0.49 -9.07 16 14 C 0.11 1.20 6.33 -3.71 -0.02 1.17 16 15 C -0.14 -1.25 6.09 -26.61 -0.16 -1.41 16 16 C -0.12 -1.06 5.88 -26.67 -0.16 -1.21 16 17 C -0.12 -1.24 5.15 -26.59 -0.14 -1.38 16 18 C 0.15 1.89 3.17 -67.60 -0.21 1.68 16 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 20 C 0.07 0.92 3.52 -3.82 -0.01 0.91 16 21 N -0.69 -8.02 5.84 -115.06 -0.67 -8.69 16 22 C 0.14 1.65 6.27 -4.97 -0.03 1.62 16 23 C 0.02 0.27 6.84 -82.10 -0.56 -0.29 16 24 C -0.22 -1.82 11.12 -39.38 -0.44 -2.26 16 25 C -0.07 -0.46 12.30 29.74 0.37 -0.09 16 26 O 0.10 0.98 11.20 17.20 0.19 1.17 16 27 N -0.36 -4.46 12.07 33.42 0.40 -4.06 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.09 1.64 7.47 -51.92 -0.39 1.26 16 30 H 0.09 1.65 8.12 -51.91 -0.42 1.23 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.01 5.96 -51.93 -0.31 0.70 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.81 7.81 -51.93 -0.41 0.41 16 39 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 40 H 0.09 1.48 7.03 -51.93 -0.36 1.11 16 41 H 0.34 3.82 8.78 -39.29 -0.34 3.47 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.22 0.46 8.06 -52.48 -0.42 0.04 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -33.69 378.97 -9.15 -42.84 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.76 Total: 2.98 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.09 Total: -7.28 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.03 Total: -47.15 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.26 Total: -9.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.69 -9.15 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491242219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.643 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds