Wall clock time and date at job start Tue Mar 31 2020 22:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00301 * 2 1 4 4 H 1.48494 * 109.47147 * 239.99825 * 3 2 1 5 5 H 1.48503 * 109.46777 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47582 * 119.99463 * 3 2 1 7 7 C 1.38802 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99996 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46870 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00192 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99615 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.62956 * 5.39494 * 13 11 10 15 15 C 1.53191 * 108.77412 * 126.41586 * 14 13 11 16 16 C 1.53045 * 109.30847 * 54.63423 * 15 14 13 17 17 C 1.53075 * 109.66034 * 298.69701 * 16 15 14 18 18 C 1.46923 * 120.62735 * 185.42264 * 13 11 10 19 19 H 1.08997 * 109.58859 * 113.65377 * 18 13 11 20 20 C 1.53002 * 109.58694 * 353.36900 * 18 13 11 21 21 N 1.46903 * 109.46759 * 180.02562 * 20 18 13 22 22 C 1.46900 * 110.99629 * 174.99420 * 21 20 18 23 23 C 1.50705 * 109.46993 * 180.02562 * 22 21 20 24 24 C 1.41377 * 126.80390 * 94.70814 * 23 22 21 25 25 C 1.35447 * 103.98428 * 180.26181 * 24 23 22 26 26 O 1.34031 * 106.44999 * 0.02562 * 25 24 23 27 27 N 1.20921 * 111.56883 * 359.97438 * 26 25 24 28 28 H 0.97001 * 119.99399 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47454 * 59.99430 * 10 9 7 30 30 H 1.09004 * 109.46632 * 299.99855 * 10 9 7 31 31 H 1.09004 * 109.58522 * 246.20441 * 14 13 11 32 32 H 1.08997 * 109.58875 * 6.62932 * 14 13 11 33 33 H 1.08994 * 109.50086 * 174.58007 * 15 14 13 34 34 H 1.08994 * 109.49683 * 294.65470 * 15 14 13 35 35 H 1.08993 * 109.46470 * 58.65942 * 16 15 14 36 36 H 1.09005 * 109.45814 * 178.61732 * 16 15 14 37 37 H 1.09003 * 109.38987 * 301.27845 * 17 16 15 38 38 H 1.08999 * 109.62517 * 181.17504 * 17 16 15 39 39 H 1.08998 * 109.46756 * 60.00622 * 20 18 13 40 40 H 1.08990 * 109.47210 * 300.00255 * 20 18 13 41 41 H 1.00896 * 111.00573 * 298.94615 * 21 20 18 42 42 H 1.09000 * 109.47449 * 60.00096 * 22 21 20 43 43 H 1.09003 * 109.46999 * 300.00129 * 22 21 20 44 44 H 1.08007 * 128.00476 * 0.24199 * 24 23 22 45 45 H 1.08009 * 126.77651 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8441 -6.3432 0.0022 14 6 4.2915 -6.1209 0.1220 15 6 4.8256 -6.9657 1.2830 16 6 4.4299 -8.4284 1.0684 17 6 2.9042 -8.5509 1.0439 18 6 2.3484 -7.7211 -0.1177 19 1 2.6810 -8.1481 -1.0637 20 6 0.8194 -7.7226 -0.0636 21 7 0.3266 -9.1014 -0.1830 22 6 -1.1319 -9.1555 -0.0163 23 6 -1.5995 -10.5824 -0.1443 24 6 -1.8177 -11.4999 0.9090 25 6 -2.2202 -12.6301 0.2804 26 8 -2.2231 -12.3545 -1.0313 27 7 -1.8768 -11.2161 -1.2471 28 1 -0.4849 0.8401 -0.0004 29 1 3.1238 -3.7310 0.8924 30 1 3.1251 -3.7317 -0.8875 31 1 4.7847 -6.4183 -0.8035 32 1 4.4842 -5.0663 0.3187 33 1 5.9118 -6.8848 1.3222 34 1 4.3999 -6.6069 2.2200 35 1 4.8356 -8.7790 0.1195 36 1 4.8297 -9.0357 1.8806 37 1 2.4962 -8.1799 1.9841 38 1 2.6229 -9.5957 0.9119 39 1 0.4262 -7.1235 -0.8849 40 1 0.4889 -7.3000 0.8852 41 1 0.6054 -9.5102 -1.0623 42 1 -1.6082 -8.5463 -0.7845 43 1 -1.3994 -8.7727 0.9686 44 1 -1.6922 -11.3372 1.9693 45 1 -2.4855 -13.5687 0.7445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491242219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:49 Heat of formation + Delta-G solvation = 16.839624 kcal Electronic energy + Delta-G solvation = -26840.907734 eV Core-core repulsion = 22987.481040 eV Total energy + Delta-G solvation = -3853.426694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.89425 -41.58463 -38.45001 -37.58092 -35.00773 -34.60104 -33.93268 -32.80057 -32.29337 -30.45629 -28.43504 -27.68291 -25.93494 -25.11386 -24.04431 -22.86808 -22.03344 -21.82857 -20.38190 -19.45113 -18.79218 -18.53497 -17.94330 -17.20222 -16.89143 -16.84288 -16.46466 -16.13921 -15.97587 -15.37297 -15.24029 -15.16855 -14.93183 -14.53414 -14.39451 -14.22615 -14.16655 -13.69186 -13.48756 -13.30949 -13.20086 -13.09321 -12.88860 -12.78585 -12.62455 -12.24154 -12.05390 -11.89688 -11.74057 -11.58731 -11.44824 -11.17148 -11.14167 -10.56876 -10.48147 -10.27878 -9.68001 -9.34575 -8.68014 -8.36003 -6.14002 0.63918 1.23004 1.27440 1.42462 1.44508 1.54065 1.56538 2.04790 2.26404 2.50037 2.98060 3.02466 3.24166 3.39794 3.60313 3.66549 3.83085 3.89442 4.02783 4.10630 4.23504 4.25062 4.27386 4.30566 4.40050 4.44456 4.48314 4.54665 4.64505 4.68643 4.76009 4.88861 4.95839 4.99777 5.03267 5.12431 5.17220 5.22955 5.26612 5.39863 5.49811 5.61666 5.79470 6.17953 6.21615 6.31573 7.05165 7.16242 7.36546 8.72907 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.002485 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.158245 B =11264.524844 C =13013.737607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.551 6.551 13 N -0.604 5.604 14 C 0.099 3.901 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.110 4.110 18 C 0.153 3.847 19 H 0.081 0.919 20 C 0.082 3.918 21 N -0.673 5.673 22 C 0.143 3.857 23 C 0.006 3.994 24 C -0.229 4.229 25 C -0.043 4.043 26 O 0.091 5.909 27 N -0.399 5.399 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.340 0.660 42 H 0.029 0.971 43 H 0.097 0.903 44 H 0.191 0.809 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -26.326 3.507 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.429 6.429 13 N -0.339 5.339 14 C -0.023 4.023 15 C -0.169 4.169 16 C -0.154 4.154 17 C -0.148 4.148 18 C 0.050 3.950 19 H 0.099 0.901 20 C -0.046 4.046 21 N -0.306 5.306 22 C 0.013 3.987 23 C -0.152 4.152 24 C -0.251 4.251 25 C -0.124 4.124 26 O 0.025 5.975 27 N -0.104 5.104 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.157 0.843 42 H 0.047 0.953 43 H 0.115 0.885 44 H 0.208 0.792 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 6.015 -26.313 2.866 27.143 hybrid contribution 1.002 1.968 -0.017 2.208 sum 7.017 -24.345 2.849 25.496 Atomic orbital electron populations 1.70180 1.07977 1.28656 1.47982 1.26129 0.95963 1.03317 0.93733 0.85017 0.77834 0.75705 0.79543 1.18664 1.20413 1.18548 1.23162 0.95306 0.92025 1.58928 0.89991 1.85523 1.10509 0.99145 1.97005 1.23405 1.03368 0.94779 1.05998 1.20124 0.86209 0.86448 0.75451 1.90714 1.17083 1.84828 1.50293 1.48172 1.07911 1.05065 1.72723 1.22063 0.77896 1.01801 1.00501 1.21917 1.02216 0.95474 0.97306 1.21550 0.94553 0.96068 1.03189 1.21791 0.96116 1.00418 0.96492 1.21259 0.92917 0.80825 1.00018 0.90109 1.22286 0.94158 0.86433 1.01764 1.60538 1.09965 1.19844 1.40282 1.20017 0.88280 0.88059 1.02311 1.23660 1.02735 0.99178 0.89676 1.23034 1.07118 0.92564 1.02394 1.26894 1.00770 1.02924 0.81823 1.84784 1.62787 1.22486 1.27442 1.73869 1.17790 0.93360 1.25389 0.92009 0.87754 0.87902 0.89251 0.89518 0.88191 0.92681 0.90643 0.90272 0.93365 0.89114 0.95421 0.91733 0.84292 0.95298 0.88478 0.79200 0.71960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.12 -5.02 4.56 71.24 0.33 -4.69 16 11 C 0.53 19.88 7.63 87.66 0.67 20.55 16 12 O -0.55 -24.70 11.27 -3.02 -0.03 -24.73 16 13 N -0.60 -16.42 2.97 -795.02 -2.36 -18.78 16 14 C 0.10 1.92 6.33 86.36 0.55 2.47 16 15 C -0.13 -1.99 6.09 30.67 0.19 -1.81 16 16 C -0.12 -1.62 5.88 30.63 0.18 -1.44 16 17 C -0.11 -2.08 5.15 30.68 0.16 -1.93 16 18 C 0.15 3.66 3.17 44.98 0.14 3.80 16 19 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 20 C 0.08 2.40 3.52 86.30 0.30 2.71 16 21 N -0.67 -16.20 5.84 -517.92 -3.03 -19.22 16 22 C 0.14 3.59 6.27 85.56 0.54 4.13 16 23 C 0.01 0.13 6.84 43.58 0.30 0.42 16 24 C -0.23 -3.51 11.12 22.40 0.25 -3.26 16 25 C -0.04 -0.48 12.30 67.17 0.83 0.35 16 26 O 0.09 1.74 11.20 71.72 0.80 2.55 16 27 N -0.40 -9.89 12.07 -49.56 -0.60 -10.49 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.10 3.84 7.47 -2.40 -0.02 3.83 16 30 H 0.10 3.82 8.12 -2.39 -0.02 3.80 16 31 H 0.09 1.38 8.14 -2.38 -0.02 1.37 16 32 H 0.09 1.75 5.96 -2.39 -0.01 1.74 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.59 7.81 -2.39 -0.02 1.57 16 39 H 0.03 1.02 6.45 -2.39 -0.02 1.00 16 40 H 0.06 2.25 7.03 -2.39 -0.02 2.24 16 41 H 0.34 7.86 8.78 -89.70 -0.79 7.08 16 42 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 45 H 0.26 -0.08 8.06 -2.91 -0.02 -0.10 16 Total: -1.00 -78.40 378.97 1.68 -76.72 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.22 Total: 21.91 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.53 Total: -8.14 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -5.70 Total: -104.52 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.77 Total: -22.19 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -78.40 1.68 -76.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491242219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.555 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds