Wall clock time and date at job start Tue Mar 31 2020 23:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 124.52152 * 2 1 4 4 C 1.37477 * 115.09811 * 180.02562 * 3 2 1 5 5 C 1.36641 * 113.29948 * 0.02562 * 4 3 2 6 6 C 1.46585 * 125.45956 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99806 * 359.96785 * 6 5 4 8 8 N 1.34776 * 119.99830 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99789 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47437 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47446 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46983 * 55.00115 * 11 10 9 13 13 C 1.53000 * 109.47243 * 174.99824 * 11 10 9 14 14 N 1.46900 * 109.47317 * 295.00053 * 11 10 9 15 15 C 1.46897 * 110.99945 * 155.00139 * 14 11 10 16 16 C 1.50707 * 109.47122 * 180.02562 * 15 14 11 17 17 O 1.21296 * 119.99678 * 359.97438 * 16 15 14 18 18 N 1.34767 * 119.99997 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99933 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99925 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00091 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00377 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99716 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46908 * 90.00982 * 23 21 19 25 25 H 1.48502 * 109.46717 * 210.00065 * 23 21 19 26 26 H 1.48497 * 109.47563 * 330.00232 * 23 21 19 27 27 S 1.70620 * 124.52019 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46903 * 299.98324 * 1 2 3 30 30 H 1.09004 * 109.47160 * 59.98089 * 1 2 3 31 31 H 1.08001 * 122.45277 * 0.03913 * 3 2 1 32 32 H 1.08006 * 123.34704 * 180.02562 * 4 3 2 33 33 H 0.96997 * 120.00584 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47259 * 299.99602 * 9 8 6 35 35 H 1.08998 * 109.47761 * 59.99492 * 9 8 6 36 36 H 1.09002 * 109.46944 * 300.00252 * 10 9 8 37 37 H 1.08998 * 109.47144 * 59.99566 * 10 9 8 38 38 H 1.09002 * 109.47516 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47599 * 300.00204 * 13 11 10 40 40 H 1.09002 * 109.46893 * 60.00236 * 13 11 10 41 41 H 1.00901 * 110.99854 * 31.04543 * 14 11 10 42 42 H 1.09006 * 109.47143 * 299.99526 * 15 14 11 43 43 H 1.08995 * 109.47435 * 60.00078 * 15 14 11 44 44 H 0.96996 * 120.00690 * 0.02562 * 18 16 15 45 45 H 0.96996 * 120.00343 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 3.9493 -0.4491 -0.0016 6 6 5.3123 -0.9883 -0.0018 7 8 6.2659 -0.2321 -0.0017 8 7 5.5096 -2.3216 -0.0023 9 6 6.8718 -2.8605 -0.0020 10 6 6.8155 -4.3894 -0.0021 11 6 8.2382 -4.9522 -0.0024 12 1 8.7930 -4.5378 0.8394 13 6 8.1839 -6.4761 0.1233 14 7 8.9087 -4.5880 -1.2577 15 6 10.3675 -4.5630 -1.0873 16 6 11.0193 -4.1858 -2.3927 17 8 10.3358 -3.9605 -3.3691 18 7 12.3617 -4.0988 -2.4753 19 6 12.9547 -3.7562 -3.6630 20 1 12.3460 -3.5555 -4.5323 21 6 14.3386 -3.6660 -3.7480 22 7 15.0792 -3.9096 -2.6901 23 14 15.1464 -3.1984 -5.3661 24 1 15.2946 -1.7225 -5.4371 25 1 16.4853 -3.8349 -5.4529 26 1 14.3019 -3.6661 -6.4944 27 16 2.4739 -1.4058 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5136 0.8902 30 1 -0.3634 0.5141 -0.8898 31 1 1.8429 2.0965 0.0006 32 1 4.3550 1.6703 -0.0002 33 1 4.7496 -2.9243 -0.0022 34 1 7.3991 -2.5160 -0.8917 35 1 7.3984 -2.5167 0.8882 36 1 6.2884 -4.7336 0.8878 37 1 6.2888 -4.7336 -0.8922 38 1 9.1975 -6.8771 0.1226 39 1 7.6864 -6.7464 1.0548 40 1 7.6291 -6.8905 -0.7185 41 1 8.5699 -3.7033 -1.6051 42 1 10.6318 -3.8303 -0.3247 43 1 10.7143 -5.5493 -0.7793 44 1 12.9084 -4.2794 -1.6947 45 1 16.0453 -3.8470 -2.7496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491972197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:08 Heat of formation + Delta-G solvation = -77.801175 kcal Electronic energy + Delta-G solvation = -25627.123040 eV Core-core repulsion = 21769.592414 eV Total energy + Delta-G solvation = -3857.530627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96589 -40.23388 -38.89030 -38.30538 -36.11148 -35.76713 -33.37809 -33.14723 -32.51266 -30.25523 -28.20178 -27.93830 -25.88133 -24.81551 -23.99829 -22.46718 -21.45186 -21.14201 -20.25652 -19.93041 -19.00253 -17.86483 -17.42056 -17.07568 -16.93443 -16.63257 -16.47132 -16.16952 -15.87851 -15.64805 -15.27639 -14.96882 -14.79339 -14.55609 -14.32779 -14.07907 -14.00859 -13.52387 -13.37549 -13.34038 -13.17759 -12.98458 -12.88491 -12.74882 -12.60108 -12.44322 -12.30053 -12.21874 -12.12068 -11.93981 -11.78048 -11.52544 -11.27621 -10.39584 -10.33741 -10.03383 -9.65468 -9.55904 -9.33660 -8.48164 -5.97133 -0.56837 0.41935 0.82769 1.32733 1.36578 1.39977 1.53185 1.96635 2.03217 2.08596 2.27986 2.91960 3.18728 3.49452 3.67330 3.76373 3.85266 3.95823 4.07125 4.24117 4.29022 4.36153 4.42881 4.47151 4.50666 4.59845 4.64152 4.67502 4.74875 4.94185 4.98103 5.01667 5.05029 5.07426 5.16340 5.18925 5.23315 5.38152 5.39157 5.47725 5.90183 6.12161 6.31451 6.38889 6.58382 6.99850 7.10754 7.54088 8.09644 8.69264 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.001869 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.510048 B =14981.072700 C =16128.060962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.185 4.185 3 C -0.171 4.171 4 C -0.056 4.056 5 C -0.310 4.310 6 C 0.583 3.417 7 O -0.580 6.580 8 N -0.710 5.710 9 C 0.116 3.884 10 C -0.119 4.119 11 C 0.083 3.917 12 H 0.054 0.946 13 C -0.135 4.135 14 N -0.680 5.680 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.273 1.273 27 S 0.246 5.754 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.412 0.588 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.340 0.660 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.546 1.818 13.231 33.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.305 4.305 3 C -0.200 4.200 4 C -0.090 4.090 5 C -0.430 4.430 6 C 0.371 3.629 7 O -0.462 6.462 8 N -0.362 5.362 9 C -0.008 4.008 10 C -0.157 4.157 11 C -0.026 4.026 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.193 1.193 26 H -0.198 1.198 27 S 0.513 5.487 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.182 0.818 32 H 0.159 0.841 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.428 0.254 12.374 32.849 hybrid contribution 1.477 2.542 -0.066 2.941 sum -28.952 2.796 12.308 31.583 Atomic orbital electron populations 1.20573 0.84901 1.04464 1.04713 1.24764 1.03177 0.97265 1.05289 1.20099 0.91550 1.01169 1.07199 1.20945 0.97359 0.94994 0.95697 1.24468 0.97021 0.99274 1.22242 1.17399 0.87451 0.82547 0.75524 1.90833 1.43762 1.59237 1.52320 1.45683 1.09793 1.05843 1.74892 1.21442 0.82757 0.95228 1.01379 1.21917 0.97156 0.91279 1.05316 1.21630 0.93654 0.97546 0.89811 0.92829 1.21777 1.02007 0.93101 1.02443 1.60263 1.02652 1.38809 1.29761 1.21585 0.89532 1.02697 0.92978 1.20929 0.82470 0.82782 0.91492 1.90486 1.63647 1.56419 1.40536 1.41929 1.05497 1.61157 1.12407 1.19672 0.90782 1.45642 0.90442 0.90437 1.26056 0.96159 0.96740 1.02329 1.69668 1.06669 1.49135 1.30538 0.84920 0.77550 0.78507 0.77295 1.19733 1.19267 1.19796 1.82640 0.91840 1.06920 1.67279 0.90014 0.88708 0.88933 0.81763 0.84056 0.75070 0.93642 0.91663 0.87072 0.89785 0.93420 0.89792 0.92508 0.83957 0.92040 0.87598 0.76964 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.33 71.24 0.74 0.34 16 2 C -0.18 -2.06 6.28 24.68 0.15 -1.91 16 3 C -0.17 -2.36 10.00 21.08 0.21 -2.15 16 4 C -0.06 -1.11 10.01 21.72 0.22 -0.90 16 5 C -0.31 -6.56 6.45 24.08 0.16 -6.40 16 6 C 0.58 15.80 7.78 86.42 0.67 16.47 16 7 O -0.58 -21.30 16.84 -4.36 -0.07 -21.37 16 8 N -0.71 -14.79 5.55 -467.17 -2.59 -17.39 16 9 C 0.12 2.64 5.50 86.38 0.48 3.12 16 10 C -0.12 -2.03 4.92 30.59 0.15 -1.88 16 11 C 0.08 1.83 2.65 44.91 0.12 1.95 16 12 H 0.05 1.12 7.80 -2.39 -0.02 1.11 16 13 C -0.14 -2.59 9.41 71.98 0.68 -1.92 16 14 N -0.68 -22.00 5.93 -495.58 -2.94 -24.94 16 15 C 0.06 2.33 5.97 85.56 0.51 2.84 16 16 C 0.44 21.78 7.82 87.66 0.69 22.47 16 17 O -0.62 -36.27 15.78 -3.08 -0.05 -36.32 16 18 N -0.57 -30.64 5.29 -306.98 -1.62 -32.26 16 19 C -0.34 -19.79 9.68 84.04 0.81 -18.98 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.84 13.05 21.66 0.28 -50.56 16 23 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 S 0.25 3.03 22.08 -56.49 -1.25 1.78 16 28 H 0.08 0.21 8.11 -2.39 -0.02 0.19 16 29 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.41 5.77 7.59 -92.71 -0.70 5.06 16 34 H 0.05 1.34 6.43 -2.39 -0.02 1.32 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.34 12.07 6.17 -89.69 -0.55 11.52 16 42 H 0.06 2.01 8.06 -2.38 -0.02 1.99 16 43 H 0.11 3.42 7.43 -2.39 -0.02 3.40 16 44 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 45 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -79.24 393.21 -1.12 -80.36 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -0.95 Total: 41.61 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.05 Total: 12.79 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -6.87 Total: -125.15 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.12 Total: -57.69 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.25 Total: 1.78 kcal Total: -79.24 -1.12 -80.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491972197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.559 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds