Wall clock time and date at job start Tue Mar 31 2020 23:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33822 * 124.52044 * 2 1 4 4 C 1.37475 * 115.09727 * 179.70966 * 3 2 1 5 5 C 1.36642 * 113.29914 * 0.49217 * 4 3 2 6 6 C 1.46587 * 125.45664 * 179.80554 * 5 4 3 7 7 O 1.21697 * 120.00303 * 359.71328 * 6 5 4 8 8 N 1.34781 * 119.99812 * 179.71952 * 6 5 4 9 9 C 1.46497 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00498 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99920 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47441 * 89.99762 * 23 21 19 25 25 H 1.48495 * 109.46914 * 210.00201 * 23 21 19 26 26 H 1.48508 * 109.46806 * 329.99819 * 23 21 19 27 27 S 1.70615 * 124.52667 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47099 * 299.99531 * 1 2 3 30 30 H 1.09003 * 109.47321 * 60.00268 * 1 2 3 31 31 H 1.07992 * 122.45035 * 359.95528 * 3 2 1 32 32 H 1.08004 * 123.34806 * 180.30033 * 4 3 2 33 33 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 34 34 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 35 35 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 36 36 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 37 37 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 39 39 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 40 40 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 41 41 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 42 42 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 43 43 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 44 44 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 45 45 H 0.97002 * 120.00283 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8775 0.0063 5 6 3.9492 -0.4490 0.0007 6 6 5.3124 -0.9881 0.0012 7 8 6.2658 -0.2319 0.0018 8 7 5.5097 -2.3214 0.0010 9 6 6.8720 -2.8603 0.0010 10 6 6.8156 -4.3892 0.0001 11 1 6.2130 -4.7310 0.8416 12 6 6.1879 -4.8757 -1.3077 13 6 8.2329 -4.9519 0.1258 14 7 8.1702 -6.4146 0.2453 15 6 9.5158 -6.9909 0.3688 16 6 9.4114 -8.4894 0.4897 17 8 8.3231 -9.0246 0.4740 18 7 10.5273 -9.2347 0.6153 19 6 10.4323 -10.5980 0.7247 20 1 9.4633 -11.0747 0.7107 21 6 11.5827 -11.3665 0.8536 22 7 11.4917 -12.6731 0.9590 23 14 13.2589 -10.5421 0.8771 24 1 13.6257 -10.2058 2.2762 25 1 14.2727 -11.4658 0.3079 26 1 13.2106 -9.2992 0.0656 27 16 2.4740 -1.4056 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8428 2.0964 -0.0007 32 1 4.3549 1.6703 0.0118 33 1 4.7497 -2.9242 0.0001 34 1 7.3988 -2.5162 0.8911 35 1 7.3988 -2.5159 -0.8889 36 1 6.7906 -4.5338 -2.1491 37 1 6.1482 -5.9650 -1.3085 38 1 5.1782 -4.4748 -1.3972 39 1 8.7120 -4.5351 1.0117 40 1 8.8099 -4.6840 -0.7593 41 1 7.6729 -6.8201 -0.5334 42 1 10.1022 -6.7372 -0.5144 43 1 10.0034 -6.5882 1.2567 44 1 11.3976 -8.8066 0.6274 45 1 12.2949 -13.2096 1.0494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495610634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:43 Heat of formation + Delta-G solvation = -46.805872 kcal Electronic energy + Delta-G solvation = -25272.581533 eV Core-core repulsion = 21416.394964 eV Total energy + Delta-G solvation = -3856.186570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14166 -38.62477 -38.25654 -37.26035 -34.99868 -33.92959 -32.78233 -32.19012 -31.63456 -28.34635 -27.55935 -26.58451 -24.87208 -23.94251 -23.06905 -21.60791 -20.71636 -19.60730 -19.30406 -18.45093 -18.19221 -16.79087 -16.44271 -15.94326 -15.80935 -15.62888 -15.31141 -14.94005 -14.70742 -14.41465 -14.29051 -14.09175 -13.66821 -13.52611 -13.36441 -13.11803 -12.90962 -12.84502 -12.76210 -12.47862 -12.30097 -12.28923 -12.01294 -11.75447 -11.42212 -11.26679 -11.18982 -11.05064 -10.97769 -10.59621 -10.40259 -9.97876 -9.57617 -9.49469 -9.08950 -9.04534 -8.60121 -8.20278 -8.15145 -6.31443 -3.82932 0.04989 0.97590 1.38391 1.94116 2.75671 2.86788 3.02498 3.07152 3.15191 3.73693 4.06079 4.10751 4.23319 4.40915 4.63325 4.64096 4.68994 4.77066 4.85390 4.90613 4.94136 5.10123 5.21494 5.29104 5.34529 5.35550 5.44263 5.50821 5.54329 5.62849 5.66269 5.69862 5.77492 5.80654 5.89837 5.91530 5.97560 6.05659 6.14122 7.06715 7.07335 7.55551 7.58210 7.79904 8.14094 8.59461 8.94585 9.42151 9.82305 10.81636 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.001544 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.440986 B =18128.603263 C =18845.705183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.192 4.192 3 C -0.159 4.159 4 C -0.049 4.049 5 C -0.272 4.272 6 C 0.591 3.409 7 O -0.530 6.530 8 N -0.723 5.723 9 C 0.126 3.874 10 C -0.103 4.103 11 H 0.090 0.910 12 C -0.154 4.154 13 C 0.067 3.933 14 N -0.668 5.668 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 S 0.202 5.798 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.351 0.649 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.911 28.481 -3.626 33.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.312 4.312 3 C -0.190 4.190 4 C -0.082 4.082 5 C -0.393 4.393 6 C 0.377 3.623 7 O -0.409 6.409 8 N -0.375 5.375 9 C 0.002 3.998 10 C -0.122 4.122 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 S 0.470 5.530 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.171 0.829 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.258 26.854 -2.940 32.606 hybrid contribution 1.722 1.878 -0.846 2.685 sum -16.536 28.732 -3.786 33.366 Atomic orbital electron populations 1.20416 0.87264 1.03353 1.03507 1.24282 1.01657 0.97721 1.07527 1.19959 0.92619 0.99738 1.06650 1.20763 0.96205 0.95193 0.96042 1.24570 0.96839 0.98184 1.19681 1.16932 0.86807 0.82212 0.76389 1.90839 1.41866 1.58044 1.50128 1.45874 1.09753 1.06212 1.75620 1.21434 0.82394 0.93101 1.02847 1.21381 0.98119 0.92774 0.99940 0.89127 1.21917 1.00344 1.02348 0.96507 1.21875 0.94939 0.88896 1.00640 1.60073 1.16370 1.02896 1.50845 1.21709 0.90741 0.94709 1.01372 1.19708 0.85032 0.87685 0.84027 1.90559 1.26874 1.73177 1.54111 1.42205 1.06532 1.07790 1.66457 1.19434 0.97143 0.79428 1.47440 0.86284 1.25036 0.98138 0.95347 0.97593 1.69620 1.29667 1.04010 1.48825 0.86670 0.84362 0.79427 0.78908 1.19582 1.20190 1.19529 1.83047 0.94244 1.07631 1.68105 0.91120 0.90084 0.90103 0.83735 0.82932 0.76660 0.90844 0.91037 0.92526 0.91229 0.92774 0.90657 0.95060 0.82871 0.93720 0.89402 0.79669 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.30 10.33 36.00 0.37 0.07 16 2 C -0.19 -1.16 6.28 -35.86 -0.23 -1.39 16 3 C -0.16 -1.03 10.00 -41.41 -0.41 -1.45 16 4 C -0.05 -0.41 10.01 -40.44 -0.40 -0.81 16 5 C -0.27 -2.48 6.45 -36.79 -0.24 -2.72 16 6 C 0.59 6.54 7.78 -12.89 -0.10 6.44 16 7 O -0.53 -7.68 16.84 5.19 0.09 -7.59 16 8 N -0.72 -6.50 5.28 -61.65 -0.33 -6.83 16 9 C 0.13 1.16 5.06 -4.05 -0.02 1.14 16 10 C -0.10 -0.95 2.63 -90.62 -0.24 -1.19 16 11 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 13 C 0.07 0.73 5.14 -3.82 -0.02 0.71 16 14 N -0.67 -9.90 6.12 -115.05 -0.70 -10.61 16 15 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 16 C 0.45 10.15 7.82 -10.99 -0.09 10.06 16 17 O -0.57 -15.07 15.78 5.55 0.09 -14.98 16 18 N -0.59 -14.03 5.09 -10.97 -0.06 -14.09 16 19 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 23 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 S 0.20 1.32 22.08 -107.50 -2.37 -1.06 16 28 H 0.07 0.21 8.11 -51.93 -0.42 -0.21 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.40 2.86 6.77 -40.82 -0.28 2.59 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 38 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.35 6.68 -39.29 -0.26 5.09 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -34.89 390.21 -9.21 -44.10 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -6.54 Total: 12.65 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.31 Total: -56.47 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.37 Total: -1.06 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.89 -9.21 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495610634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.707 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds