Wall clock time and date at job start Tue Mar 31 2020 23:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33822 * 124.52044 * 2 1 4 4 C 1.37475 * 115.09727 * 179.70966 * 3 2 1 5 5 C 1.36642 * 113.29914 * 0.49217 * 4 3 2 6 6 C 1.46587 * 125.45664 * 179.80554 * 5 4 3 7 7 O 1.21697 * 120.00303 * 359.71328 * 6 5 4 8 8 N 1.34781 * 119.99812 * 179.71952 * 6 5 4 9 9 C 1.46497 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00498 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99920 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47441 * 89.99762 * 23 21 19 25 25 H 1.48495 * 109.46914 * 210.00201 * 23 21 19 26 26 H 1.48508 * 109.46806 * 329.99819 * 23 21 19 27 27 S 1.70615 * 124.52667 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47099 * 299.99531 * 1 2 3 30 30 H 1.09003 * 109.47321 * 60.00268 * 1 2 3 31 31 H 1.07992 * 122.45035 * 359.95528 * 3 2 1 32 32 H 1.08004 * 123.34806 * 180.30033 * 4 3 2 33 33 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 34 34 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 35 35 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 36 36 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 37 37 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 39 39 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 40 40 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 41 41 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 42 42 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 43 43 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 44 44 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 45 45 H 0.97002 * 120.00283 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8775 0.0063 5 6 3.9492 -0.4490 0.0007 6 6 5.3124 -0.9881 0.0012 7 8 6.2658 -0.2319 0.0018 8 7 5.5097 -2.3214 0.0010 9 6 6.8720 -2.8603 0.0010 10 6 6.8156 -4.3892 0.0001 11 1 6.2130 -4.7310 0.8416 12 6 6.1879 -4.8757 -1.3077 13 6 8.2329 -4.9519 0.1258 14 7 8.1702 -6.4146 0.2453 15 6 9.5158 -6.9909 0.3688 16 6 9.4114 -8.4894 0.4897 17 8 8.3231 -9.0246 0.4740 18 7 10.5273 -9.2347 0.6153 19 6 10.4323 -10.5980 0.7247 20 1 9.4633 -11.0747 0.7107 21 6 11.5827 -11.3665 0.8536 22 7 11.4917 -12.6731 0.9590 23 14 13.2589 -10.5421 0.8771 24 1 13.6257 -10.2058 2.2762 25 1 14.2727 -11.4658 0.3079 26 1 13.2106 -9.2992 0.0656 27 16 2.4740 -1.4056 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8428 2.0964 -0.0007 32 1 4.3549 1.6703 0.0118 33 1 4.7497 -2.9242 0.0001 34 1 7.3988 -2.5162 0.8911 35 1 7.3988 -2.5159 -0.8889 36 1 6.7906 -4.5338 -2.1491 37 1 6.1482 -5.9650 -1.3085 38 1 5.1782 -4.4748 -1.3972 39 1 8.7120 -4.5351 1.0117 40 1 8.8099 -4.6840 -0.7593 41 1 7.6729 -6.8201 -0.5334 42 1 10.1022 -6.7372 -0.5144 43 1 10.0034 -6.5882 1.2567 44 1 11.3976 -8.8066 0.6274 45 1 12.2949 -13.2096 1.0494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495610634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:42 Heat of formation + Delta-G solvation = -73.606034 kcal Electronic energy + Delta-G solvation = -25273.743675 eV Core-core repulsion = 21416.394964 eV Total energy + Delta-G solvation = -3857.348712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94521 -40.31080 -38.90964 -38.21504 -36.22463 -35.71537 -33.79711 -33.52990 -32.79876 -29.18219 -28.65843 -27.39452 -26.30883 -24.72794 -24.10958 -22.34668 -21.52552 -21.26367 -20.39192 -20.02668 -18.95929 -17.89473 -17.33690 -17.20333 -16.74579 -16.71117 -16.53674 -16.06413 -15.74275 -15.55053 -15.06200 -15.01278 -14.79710 -14.61811 -14.47539 -14.26911 -13.99963 -13.87164 -13.55579 -13.43282 -13.30893 -13.13546 -12.93786 -12.81475 -12.72614 -12.40862 -12.12701 -11.96823 -11.90410 -11.86830 -11.77581 -11.51043 -11.27144 -10.43352 -10.29383 -10.24441 -9.63400 -9.55872 -9.31836 -8.41062 -6.01985 -0.54009 0.43975 0.85475 1.30802 1.35468 1.36248 1.44923 1.95980 2.01109 2.12238 2.23346 2.75485 3.15407 3.42159 3.70725 3.84892 3.88753 3.94870 3.96970 4.18218 4.25701 4.37911 4.43813 4.51019 4.55566 4.56879 4.67221 4.71985 4.74059 4.78430 4.92951 4.99135 5.06097 5.08369 5.17351 5.19040 5.30847 5.38650 5.40130 5.52945 5.90725 6.04963 6.33476 6.41105 6.60128 6.88312 7.01946 7.40170 7.96585 8.76505 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.001544 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.440986 B =18128.603263 C =18845.705183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.186 4.186 3 C -0.169 4.169 4 C -0.052 4.052 5 C -0.307 4.307 6 C 0.588 3.412 7 O -0.574 6.574 8 N -0.714 5.714 9 C 0.131 3.869 10 C -0.092 4.092 11 H 0.085 0.915 12 C -0.152 4.152 13 C 0.068 3.932 14 N -0.686 5.686 15 C 0.061 3.939 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.055 0.945 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.231 1.231 27 S 0.228 5.772 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.408 0.592 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.345 0.655 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.477 31.253 -3.932 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.306 4.306 3 C -0.199 4.199 4 C -0.087 4.087 5 C -0.427 4.427 6 C 0.376 3.624 7 O -0.456 6.456 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.111 4.111 11 H 0.103 0.897 12 C -0.210 4.210 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.072 4.072 16 C 0.236 3.764 17 O -0.498 6.498 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.154 1.154 27 S 0.496 5.504 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.183 0.817 32 H 0.165 0.835 33 H 0.244 0.756 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.165 0.835 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.225 0.775 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.850 29.634 -3.249 34.747 hybrid contribution 1.359 0.983 -0.749 1.837 sum -16.491 30.617 -3.998 35.005 Atomic orbital electron populations 1.20561 0.85226 1.04272 1.04692 1.24724 1.03035 0.97280 1.05582 1.20130 0.91787 1.00996 1.06989 1.20938 0.97181 0.94964 0.95580 1.24508 0.96997 0.99104 1.22089 1.17231 0.87237 0.82368 0.75589 1.90802 1.43353 1.59022 1.52429 1.45804 1.10113 1.05881 1.74744 1.21346 0.82459 0.92841 1.02591 1.21239 0.97319 0.92521 0.99987 0.89676 1.21899 1.01246 1.01450 0.96356 1.21947 0.96098 0.86359 1.01728 1.60071 1.15676 1.05060 1.51126 1.21639 0.92280 0.89262 1.03991 1.21001 0.83796 0.90442 0.81168 1.90538 1.28835 1.75003 1.55468 1.42034 1.08001 1.06071 1.67163 1.19019 0.95251 0.81917 1.49746 0.92642 1.26104 1.03329 0.95822 0.96007 1.69802 1.31596 1.06313 1.49753 0.85369 0.76555 0.79520 0.80093 1.18219 1.20043 1.15436 1.82896 0.92697 1.07313 1.67495 0.90379 0.88852 0.88806 0.81724 0.83466 0.75581 0.91271 0.91183 0.92094 0.92565 0.91480 0.89801 0.93574 0.83462 0.90548 0.86774 0.77459 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.33 71.23 0.74 0.36 16 2 C -0.19 -1.87 6.28 24.68 0.15 -1.71 16 3 C -0.17 -1.95 10.00 21.09 0.21 -1.74 16 4 C -0.05 -0.86 10.01 21.72 0.22 -0.64 16 5 C -0.31 -5.50 6.45 24.08 0.16 -5.34 16 6 C 0.59 13.05 7.78 86.42 0.67 13.72 16 7 O -0.57 -17.01 16.84 -4.34 -0.07 -17.08 16 8 N -0.71 -12.35 5.28 -467.18 -2.47 -14.82 16 9 C 0.13 2.26 5.06 86.38 0.44 2.70 16 10 C -0.09 -1.54 2.63 -10.79 -0.03 -1.57 16 11 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 12 C -0.15 -2.45 8.84 71.98 0.64 -1.81 16 13 C 0.07 1.31 5.14 86.31 0.44 1.76 16 14 N -0.69 -19.12 6.12 -517.92 -3.17 -22.29 16 15 C 0.06 1.80 6.17 85.56 0.53 2.33 16 16 C 0.45 20.06 7.82 87.66 0.69 20.74 16 17 O -0.61 -33.80 15.78 -3.06 -0.05 -33.85 16 18 N -0.59 -27.76 5.09 -306.99 -1.56 -29.32 16 19 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 20 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 22 N -0.93 -56.31 13.96 21.66 0.30 -56.01 16 23 Si 0.96 38.70 27.74 68.60 1.90 40.61 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 27 S 0.23 2.65 22.08 -56.49 -1.25 1.40 16 28 H 0.08 0.24 8.11 -2.39 -0.02 0.22 16 29 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.41 5.43 6.77 -92.71 -0.63 4.81 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.08 6.68 -2.39 -0.02 1.06 16 38 H 0.07 0.89 7.18 -2.39 -0.02 0.87 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.35 10.26 6.68 -89.69 -0.60 9.66 16 42 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.39 15.11 5.76 -92.71 -0.53 14.57 16 45 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -81.50 390.21 -0.98 -82.48 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.78 Total: 38.90 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.17 Total: 9.99 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.90 Total: -122.45 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.12 Total: -50.93 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.61 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.25 Total: 1.40 kcal Total: -81.50 -0.98 -82.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495610634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.872 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds