Wall clock time and date at job start Tue Mar 31 2020 23:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33822 * 124.51854 * 2 1 4 4 C 1.37476 * 115.10009 * 179.70573 * 3 2 1 5 5 C 1.36656 * 113.29244 * 0.49327 * 4 3 2 6 6 C 1.46586 * 125.45434 * 179.79737 * 5 4 3 7 7 O 1.21698 * 120.00004 * 359.72577 * 6 5 4 8 8 N 1.34779 * 119.99867 * 179.71884 * 6 5 4 9 9 C 1.46497 * 119.99900 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47145 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.46695 * 55.00137 * 10 9 8 12 12 C 1.52997 * 109.47018 * 295.00697 * 10 9 8 13 13 C 1.52993 * 109.47169 * 175.00074 * 10 9 8 14 14 N 1.46905 * 109.47039 * 185.00340 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47100 * 90.00351 * 23 21 19 25 25 H 1.48501 * 109.47251 * 210.00371 * 23 21 19 26 26 H 1.48503 * 109.46881 * 330.00485 * 23 21 19 27 27 S 1.70618 * 124.52618 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46614 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47329 * 299.99704 * 1 2 3 30 30 H 1.08998 * 109.46996 * 60.00267 * 1 2 3 31 31 H 1.07992 * 122.45099 * 359.95548 * 3 2 1 32 32 H 1.07995 * 123.35413 * 180.29282 * 4 3 2 33 33 H 0.97000 * 119.99425 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47036 * 60.00440 * 9 8 6 35 35 H 1.08994 * 109.47323 * 300.00632 * 9 8 6 36 36 H 1.08996 * 109.47633 * 59.99846 * 12 10 9 37 37 H 1.09008 * 109.46827 * 180.02562 * 12 10 9 38 38 H 1.08998 * 109.46936 * 299.99328 * 12 10 9 39 39 H 1.09001 * 109.47393 * 65.00621 * 13 10 9 40 40 H 1.08998 * 109.47408 * 305.00267 * 13 10 9 41 41 H 1.00901 * 110.99869 * 56.04956 * 14 13 10 42 42 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 43 43 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 44 44 H 0.96997 * 120.00713 * 359.97438 * 18 16 15 45 45 H 0.96999 * 119.99907 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8777 0.0064 5 6 3.9493 -0.4490 0.0008 6 6 5.3124 -0.9881 0.0013 7 8 6.2659 -0.2319 0.0019 8 7 5.5098 -2.3214 0.0011 9 6 6.8721 -2.8602 0.0022 10 6 6.8158 -4.3892 0.0024 11 1 6.2139 -4.7307 -0.8399 12 6 6.1868 -4.8761 1.3093 13 6 8.2331 -4.9517 -0.1222 14 7 8.1705 -6.4145 -0.2425 15 6 9.5163 -6.9907 -0.3638 16 6 9.4120 -8.4892 -0.4855 17 8 8.3237 -9.0244 -0.4719 18 7 10.5281 -9.2346 -0.6082 19 6 10.4333 -10.5978 -0.7184 20 1 9.4642 -11.0744 -0.7064 21 6 11.5839 -11.3663 -0.8455 22 7 12.7631 -10.7864 -0.8597 23 14 11.4547 -13.2239 -0.9949 24 1 11.3450 -13.5988 -2.4276 25 1 12.6661 -13.8529 -0.4100 26 1 10.2504 -13.6965 -0.2659 27 16 2.4741 -1.4057 0.0006 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8429 2.0965 -0.0007 32 1 4.3549 1.6704 0.0118 33 1 4.7497 -2.9241 0.0004 34 1 7.3981 -2.5163 0.8927 35 1 7.3997 -2.5157 -0.8872 36 1 5.1771 -4.4754 1.3981 37 1 6.1471 -5.9655 1.3096 38 1 6.7886 -4.5346 2.1515 39 1 8.8094 -4.6843 0.7635 40 1 8.7130 -4.5346 -1.0075 41 1 7.5880 -6.6888 -1.0194 42 1 10.0055 -6.5878 -1.2506 43 1 10.1011 -6.7374 0.5205 44 1 11.3986 -8.8066 -0.6187 45 1 13.5664 -11.3229 -0.9480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495610635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:47 Heat of formation + Delta-G solvation = -54.328799 kcal Electronic energy + Delta-G solvation = -25214.375481 eV Core-core repulsion = 21357.862693 eV Total energy + Delta-G solvation = -3856.512788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10735 -38.46081 -38.18801 -37.12946 -34.92472 -33.86854 -32.75118 -32.14489 -31.18953 -28.28056 -27.39401 -26.39501 -24.85727 -23.95442 -23.09547 -21.57285 -20.79977 -19.61002 -19.11941 -18.29858 -17.85523 -16.70315 -16.26503 -15.96833 -15.79862 -15.44611 -15.28813 -14.77640 -14.57246 -14.39993 -14.25931 -14.02105 -13.67428 -13.58742 -13.42489 -13.24977 -12.84188 -12.66942 -12.47593 -12.37198 -12.27743 -11.93235 -11.68221 -11.51853 -11.39986 -11.16101 -11.07740 -10.99315 -10.89400 -10.39431 -10.36780 -10.21542 -9.50787 -9.46063 -9.07164 -9.02760 -8.46306 -8.05681 -7.95614 -6.41515 -3.82410 0.06769 0.99255 1.40050 1.95942 2.78998 2.89287 3.17922 3.26616 3.32582 3.91217 4.08392 4.24624 4.29561 4.44604 4.65282 4.69366 4.80278 4.86969 4.93340 4.95119 5.11648 5.16863 5.26056 5.32252 5.36651 5.45270 5.51367 5.57774 5.67096 5.71627 5.75118 5.86408 5.88165 5.91757 5.98852 6.00947 6.18410 6.27101 6.38563 7.10446 7.19512 7.55314 7.64736 7.82882 8.06513 8.61456 9.18021 9.54659 10.05992 10.76204 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.001494 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.524782 B =18737.311358 C =19459.269664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.193 4.193 3 C -0.159 4.159 4 C -0.049 4.049 5 C -0.272 4.272 6 C 0.590 3.410 7 O -0.530 6.530 8 N -0.722 5.722 9 C 0.125 3.875 10 C -0.101 4.101 11 H 0.077 0.923 12 C -0.141 4.141 13 C 0.066 3.934 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 S 0.202 5.798 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.641 23.895 1.656 31.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.312 4.312 3 C -0.189 4.189 4 C -0.082 4.082 5 C -0.392 4.392 6 C 0.376 3.624 7 O -0.409 6.409 8 N -0.374 5.374 9 C 0.001 3.999 10 C -0.120 4.120 11 H 0.096 0.904 12 C -0.198 4.198 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 S 0.469 5.531 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.815 22.289 2.333 30.586 hybrid contribution 0.788 0.938 -1.010 1.587 sum -20.027 23.227 1.323 30.697 Atomic orbital electron populations 1.20414 0.87278 1.03333 1.03495 1.24281 1.01643 0.97727 1.07588 1.19958 0.92623 0.99729 1.06636 1.20766 0.96200 0.95196 0.96072 1.24580 0.96841 0.98173 1.19603 1.16935 0.86798 0.82235 0.76428 1.90840 1.41861 1.58039 1.50124 1.45876 1.09778 1.06190 1.75568 1.21459 0.82334 0.93252 1.02835 1.21356 0.97868 0.92589 1.00177 0.90448 1.21771 0.98951 1.03311 0.95811 1.21888 0.95127 0.88540 1.00841 1.60034 1.12024 1.06903 1.50856 1.21666 0.90748 0.94738 1.01037 1.19809 0.85308 0.87859 0.84393 1.90517 1.27253 1.73319 1.55731 1.41865 1.07205 1.07225 1.63742 1.19707 0.94863 0.81424 1.46971 0.87921 1.25263 0.94617 1.00712 0.97336 1.69615 0.97665 1.36700 1.50310 0.85855 0.77818 0.82124 0.78467 1.20442 1.20921 1.19410 1.83045 0.94265 1.07640 1.68121 0.91136 0.90104 0.90110 0.83744 0.82925 0.76679 0.90825 0.91103 0.93798 0.90265 0.92660 0.90652 0.95199 0.83233 0.93868 0.89566 0.77449 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.31 10.33 36.01 0.37 0.06 16 2 C -0.19 -1.19 6.28 -35.86 -0.23 -1.42 16 3 C -0.16 -1.06 10.00 -41.41 -0.41 -1.47 16 4 C -0.05 -0.42 10.01 -40.43 -0.40 -0.82 16 5 C -0.27 -2.54 6.45 -36.79 -0.24 -2.78 16 6 C 0.59 6.73 7.78 -12.89 -0.10 6.62 16 7 O -0.53 -7.86 16.84 5.19 0.09 -7.77 16 8 N -0.72 -6.78 5.28 -61.65 -0.33 -7.11 16 9 C 0.12 1.21 5.06 -4.04 -0.02 1.19 16 10 C -0.10 -0.98 2.57 -90.62 -0.23 -1.21 16 11 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 12 C -0.14 -1.43 8.95 37.16 0.33 -1.09 16 13 C 0.07 0.77 5.07 -3.82 -0.02 0.75 16 14 N -0.67 -10.23 5.58 -115.06 -0.64 -10.87 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 17 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 18 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 S 0.20 1.35 22.08 -107.50 -2.37 -1.02 16 28 H 0.07 0.21 8.11 -51.93 -0.42 -0.21 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.40 3.01 6.77 -40.82 -0.28 2.73 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.37 7.18 -51.93 -0.37 0.00 16 37 H 0.08 0.98 7.75 -51.92 -0.40 0.57 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 5.52 8.43 -39.29 -0.33 5.18 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -33.41 395.59 -9.58 -42.99 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.71 Total: 12.68 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.31 Total: 2.90 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.30 Total: -56.13 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.37 Total: -1.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.41 -9.58 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495610635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.341 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds