Wall clock time and date at job start Tue Mar 31 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48507 * 109.46682 * 269.99814 * 3 2 1 5 5 H 1.48490 * 109.47090 * 29.99445 * 3 2 1 6 6 H 1.48497 * 109.47061 * 149.99980 * 3 2 1 7 7 C 1.38813 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00115 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00364 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47079 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47130 * 60.00878 * 11 10 9 13 13 O 1.42898 * 109.47547 * 300.00251 * 11 10 9 14 14 C 1.53004 * 109.46733 * 180.02562 * 11 10 9 15 15 N 1.46508 * 109.46845 * 185.00158 * 14 11 10 16 16 C 1.34771 * 119.99761 * 179.97438 * 15 14 11 17 17 O 1.21283 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00035 * 180.02562 * 16 15 14 19 19 N 1.46502 * 109.47479 * 179.97438 * 18 16 15 20 20 C 1.34773 * 120.00061 * 179.97438 * 19 18 16 21 21 O 1.21568 * 120.00167 * 0.02562 * 20 19 18 22 22 C 1.47733 * 119.99821 * 180.02562 * 20 19 18 23 23 C 1.39646 * 120.11740 * 0.27389 * 22 20 19 24 24 C 1.37838 * 119.88070 * 180.23285 * 23 22 20 25 25 C 1.38658 * 120.11710 * 359.49180 * 24 23 22 26 26 F 1.35093 * 119.88405 * 180.27876 * 25 24 23 27 27 C 1.38657 * 120.23712 * 0.25791 * 25 24 23 28 28 C 1.37840 * 120.11828 * 359.97438 * 27 25 24 29 29 H 0.97000 * 119.99562 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99693 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46422 * 60.00403 * 10 9 7 32 32 H 1.08994 * 109.47138 * 300.00679 * 10 9 7 33 33 H 0.96699 * 113.99686 * 299.99666 * 13 11 10 34 34 H 1.08994 * 109.47444 * 65.00465 * 14 11 10 35 35 H 1.09001 * 109.47649 * 305.00163 * 14 11 10 36 36 H 0.96996 * 120.00053 * 0.02562 * 15 14 11 37 37 H 1.09001 * 109.47187 * 60.00285 * 18 16 15 38 38 H 1.09000 * 109.47096 * 300.00003 * 18 16 15 39 39 H 0.97006 * 119.99574 * 0.02562 * 19 18 16 40 40 H 1.08004 * 120.06390 * 0.02562 * 23 22 20 41 41 H 1.08002 * 119.94593 * 179.77526 * 24 23 22 42 42 H 1.08003 * 119.94100 * 180.02562 * 27 25 24 43 43 H 1.08004 * 120.05787 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8797 -1.6199 0.8911 13 8 5.9616 -1.4420 -1.1656 14 6 6.3813 -3.5164 0.0004 15 7 7.8172 -3.2514 0.1208 16 6 8.6921 -4.2763 0.1423 17 8 8.2908 -5.4180 0.0615 18 6 10.1689 -4.0038 0.2668 19 7 10.9014 -5.2725 0.2673 20 6 12.2453 -5.2748 0.3691 21 8 12.8497 -4.2240 0.4610 22 6 12.9839 -6.5542 0.3690 23 6 12.2925 -7.7624 0.2578 24 6 12.9861 -8.9535 0.2631 25 6 14.3687 -8.9531 0.3680 26 9 15.0443 -10.1230 0.3670 27 6 15.0606 -7.7560 0.4734 28 6 14.3764 -6.5594 0.4739 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.8491 -3.0422 -0.8892 32 1 3.8484 -3.0427 0.8907 33 1 5.7549 -1.8908 -1.9968 34 1 6.1868 -4.0478 -0.9311 35 1 6.0526 -4.1262 0.8420 36 1 8.1380 -2.3383 0.1859 37 1 10.3631 -3.4723 1.1984 38 1 10.4981 -3.3941 -0.5747 39 1 10.4191 -6.1110 0.1936 40 1 11.2159 -7.7638 0.1712 41 1 12.4522 -9.8887 0.1809 42 1 16.1376 -7.7612 0.5544 43 1 14.9163 -5.6276 0.5556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497105944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:18 Heat of formation + Delta-G solvation = -125.106288 kcal Electronic energy + Delta-G solvation = -27204.687010 eV Core-core repulsion = 22778.891904 eV Total energy + Delta-G solvation = -4425.795106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.53025 -40.89265 -39.98286 -38.59138 -37.89407 -35.11510 -34.66392 -34.22900 -31.91772 -31.62014 -31.48423 -29.97635 -28.10680 -25.51341 -24.08217 -23.51714 -22.33780 -21.64541 -21.06715 -20.80097 -19.11912 -18.13509 -17.79316 -17.39771 -16.92936 -16.63374 -16.53611 -16.21641 -15.90435 -15.81206 -15.66798 -15.07823 -14.92003 -14.60309 -14.39135 -14.15632 -13.84888 -13.76042 -13.54054 -13.45747 -13.28667 -13.24244 -12.80107 -12.56356 -12.44067 -12.09023 -11.67420 -11.35791 -10.93028 -10.89679 -10.57726 -10.47043 -10.21733 -9.85286 -9.82262 -9.75015 -9.61449 -9.42736 -9.33281 -8.98011 -7.31357 -5.82300 -3.19007 0.07162 0.57765 2.15039 2.22436 2.30641 2.99269 3.14967 3.36076 3.40681 3.43746 3.55164 4.03197 4.10278 4.21056 4.27485 4.43232 4.54878 4.55555 4.58607 4.65983 4.84691 4.88901 5.01760 5.16319 5.26017 5.34538 5.42790 5.45679 5.50384 5.53570 5.61651 5.70165 5.73991 5.75747 6.04698 6.14000 6.33774 6.46334 6.94174 7.08188 7.64277 7.67380 7.76931 7.93060 8.36043 9.15409 9.87240 10.06514 11.35615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.001482 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.334603 B =18889.853671 C =19522.541388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.084 3.916 12 H 0.105 0.895 13 O -0.556 6.556 14 C 0.090 3.910 15 N -0.714 5.714 16 C 0.508 3.492 17 O -0.542 6.542 18 C 0.100 3.900 19 N -0.713 5.713 20 C 0.564 3.436 21 O -0.534 6.534 22 C -0.146 4.146 23 C -0.054 4.054 24 C -0.160 4.160 25 C 0.125 3.875 26 F -0.134 7.134 27 C -0.162 4.162 28 C -0.029 4.029 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.377 0.623 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.412 0.588 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.168 -16.361 0.417 35.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.003 3.997 11 C 0.024 3.976 12 H 0.123 0.877 13 O -0.362 6.362 14 C -0.034 4.034 15 N -0.365 5.365 16 C 0.293 3.707 17 O -0.420 6.420 18 C -0.028 4.028 19 N -0.369 5.369 20 C 0.351 3.649 21 O -0.412 6.412 22 C -0.150 4.150 23 C -0.073 4.073 24 C -0.179 4.179 25 C 0.106 3.894 26 F -0.112 7.112 27 C -0.181 4.181 28 C -0.047 4.047 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.225 0.775 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.244 0.756 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.251 0.749 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 31.234 -16.106 0.870 35.152 hybrid contribution 0.213 0.544 -0.369 0.691 sum 31.446 -15.562 0.501 35.090 Atomic orbital electron populations 1.69706 1.05155 1.25973 1.57115 1.24675 0.95238 0.97338 1.01673 0.86494 0.79092 0.84684 0.77888 1.20989 1.21768 1.20298 1.19035 0.80486 0.94791 1.43716 0.89261 1.42552 1.03945 1.01961 1.91091 1.21161 0.88406 0.90389 0.99786 1.22458 0.94773 0.90664 0.89658 0.87674 1.86552 1.85949 1.47737 1.15925 1.22156 0.79117 0.98670 1.03486 1.45818 1.07159 1.09748 1.73822 1.20441 0.88239 0.85503 0.76523 1.90709 1.79778 1.21370 1.50107 1.21096 0.88742 0.87594 1.05337 1.45588 1.06458 1.09946 1.74900 1.18091 0.81540 0.88879 0.76374 1.90810 1.68182 1.32669 1.49536 1.19923 0.94515 0.92889 1.07645 1.21264 1.00455 0.90800 0.94761 1.21133 0.92348 1.00020 1.04393 1.18016 0.90308 0.81449 0.99640 1.91538 1.80255 1.46029 1.93399 1.21178 1.01478 0.90816 1.04648 1.21155 0.92503 0.98459 0.92625 0.92969 0.80000 0.95018 0.94479 0.77536 0.90585 0.89960 0.75599 0.87874 0.87830 0.74881 0.84206 0.83787 0.83801 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.97 55.49 0.78 -28.21 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.89 22.01 27.74 -169.99 -4.71 17.30 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.75 -17.10 5.30 -59.91 -0.32 -17.42 16 10 C 0.13 2.25 5.92 -4.04 -0.02 2.23 16 11 C 0.08 1.07 3.09 -26.73 -0.08 0.99 16 12 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 13 O -0.56 -7.29 13.03 -35.23 -0.46 -7.75 16 14 C 0.09 0.93 5.31 -4.04 -0.02 0.91 16 15 N -0.71 -6.18 5.50 -60.29 -0.33 -6.51 16 16 C 0.51 4.72 7.90 -10.99 -0.09 4.63 16 17 O -0.54 -6.67 15.67 5.55 0.09 -6.58 16 18 C 0.10 0.74 6.15 -5.19 -0.03 0.71 16 19 N -0.71 -5.63 5.48 -62.47 -0.34 -5.97 16 20 C 0.56 5.09 7.77 -12.38 -0.10 5.00 16 21 O -0.53 -6.36 16.34 5.31 0.09 -6.28 16 22 C -0.15 -1.06 5.87 -104.97 -0.62 -1.68 16 23 C -0.05 -0.31 9.54 -39.20 -0.37 -0.68 16 24 C -0.16 -0.88 10.01 -39.57 -0.40 -1.28 16 25 C 0.13 0.80 7.31 -39.27 -0.29 0.51 16 26 F -0.13 -0.96 17.26 2.25 0.04 -0.93 16 27 C -0.16 -0.92 10.01 -39.57 -0.40 -1.32 16 28 C -0.03 -0.19 9.59 -39.20 -0.38 -0.56 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.37 8.35 5.40 -40.82 -0.22 8.13 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.38 4.00 9.04 45.56 0.41 4.41 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.41 2.88 8.47 -40.82 -0.35 2.54 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.41 2.97 5.47 -40.82 -0.22 2.74 16 40 H 0.14 0.57 6.40 -52.48 -0.34 0.23 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 43 H 0.15 0.90 7.65 -52.48 -0.40 0.50 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -35.77 377.37 -7.04 -42.82 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.51 Total: 11.40 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.04 Total: 2.44 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.22 Total: -58.11 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.29 Total: -20.61 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.77 -7.04 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497105944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.288 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds