Wall clock time and date at job start Tue Mar 31 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48507 * 109.46682 * 269.99814 * 3 2 1 5 5 H 1.48490 * 109.47090 * 29.99445 * 3 2 1 6 6 H 1.48497 * 109.47061 * 149.99980 * 3 2 1 7 7 C 1.38813 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00115 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00364 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47079 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47130 * 60.00878 * 11 10 9 13 13 O 1.42898 * 109.47547 * 300.00251 * 11 10 9 14 14 C 1.53004 * 109.46733 * 180.02562 * 11 10 9 15 15 N 1.46508 * 109.46845 * 185.00158 * 14 11 10 16 16 C 1.34771 * 119.99761 * 179.97438 * 15 14 11 17 17 O 1.21283 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00035 * 180.02562 * 16 15 14 19 19 N 1.46502 * 109.47479 * 179.97438 * 18 16 15 20 20 C 1.34773 * 120.00061 * 179.97438 * 19 18 16 21 21 O 1.21568 * 120.00167 * 0.02562 * 20 19 18 22 22 C 1.47733 * 119.99821 * 180.02562 * 20 19 18 23 23 C 1.39646 * 120.11740 * 0.27389 * 22 20 19 24 24 C 1.37838 * 119.88070 * 180.23285 * 23 22 20 25 25 C 1.38658 * 120.11710 * 359.49180 * 24 23 22 26 26 F 1.35093 * 119.88405 * 180.27876 * 25 24 23 27 27 C 1.38657 * 120.23712 * 0.25791 * 25 24 23 28 28 C 1.37840 * 120.11828 * 359.97438 * 27 25 24 29 29 H 0.97000 * 119.99562 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99693 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46422 * 60.00403 * 10 9 7 32 32 H 1.08994 * 109.47138 * 300.00679 * 10 9 7 33 33 H 0.96699 * 113.99686 * 299.99666 * 13 11 10 34 34 H 1.08994 * 109.47444 * 65.00465 * 14 11 10 35 35 H 1.09001 * 109.47649 * 305.00163 * 14 11 10 36 36 H 0.96996 * 120.00053 * 0.02562 * 15 14 11 37 37 H 1.09001 * 109.47187 * 60.00285 * 18 16 15 38 38 H 1.09000 * 109.47096 * 300.00003 * 18 16 15 39 39 H 0.97006 * 119.99574 * 0.02562 * 19 18 16 40 40 H 1.08004 * 120.06390 * 0.02562 * 23 22 20 41 41 H 1.08002 * 119.94593 * 179.77526 * 24 23 22 42 42 H 1.08003 * 119.94100 * 180.02562 * 27 25 24 43 43 H 1.08004 * 120.05787 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8797 -1.6199 0.8911 13 8 5.9616 -1.4420 -1.1656 14 6 6.3813 -3.5164 0.0004 15 7 7.8172 -3.2514 0.1208 16 6 8.6921 -4.2763 0.1423 17 8 8.2908 -5.4180 0.0615 18 6 10.1689 -4.0038 0.2668 19 7 10.9014 -5.2725 0.2673 20 6 12.2453 -5.2748 0.3691 21 8 12.8497 -4.2240 0.4610 22 6 12.9839 -6.5542 0.3690 23 6 12.2925 -7.7624 0.2578 24 6 12.9861 -8.9535 0.2631 25 6 14.3687 -8.9531 0.3680 26 9 15.0443 -10.1230 0.3670 27 6 15.0606 -7.7560 0.4734 28 6 14.3764 -6.5594 0.4739 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.8491 -3.0422 -0.8892 32 1 3.8484 -3.0427 0.8907 33 1 5.7549 -1.8908 -1.9968 34 1 6.1868 -4.0478 -0.9311 35 1 6.0526 -4.1262 0.8420 36 1 8.1380 -2.3383 0.1859 37 1 10.3631 -3.4723 1.1984 38 1 10.4981 -3.3941 -0.5747 39 1 10.4191 -6.1110 0.1936 40 1 11.2159 -7.7638 0.1712 41 1 12.4522 -9.8887 0.1809 42 1 16.1376 -7.7612 0.5544 43 1 14.9163 -5.6276 0.5556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497105944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:18 Heat of formation + Delta-G solvation = -154.995289 kcal Electronic energy + Delta-G solvation = -27205.983095 eV Core-core repulsion = 22778.891904 eV Total energy + Delta-G solvation = -4427.091191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.03751 -41.55359 -40.70621 -39.23114 -38.91696 -36.23009 -35.75082 -35.33872 -33.48125 -32.38607 -32.06722 -31.12278 -29.02025 -26.83211 -24.73082 -24.09467 -23.77927 -22.84412 -21.68852 -21.63668 -19.88306 -19.61528 -18.65370 -18.15252 -17.65396 -17.41919 -17.34653 -16.82529 -16.67715 -16.61074 -16.52004 -16.32852 -15.76123 -15.65697 -15.42218 -15.07583 -14.92873 -14.63633 -14.39165 -14.28367 -14.18816 -14.07983 -13.78521 -13.73819 -13.34378 -13.23377 -13.09162 -12.80976 -12.23500 -12.10142 -11.87562 -11.83317 -11.32215 -11.29518 -11.02393 -10.90006 -10.42420 -10.24898 -10.18435 -9.84089 -9.31269 -8.03637 -5.37235 -0.44050 0.14845 1.40222 1.42991 1.43421 1.50353 1.61885 1.63222 2.30564 2.48681 2.63224 3.09076 3.27342 3.33268 3.50811 3.55383 3.60491 3.68931 3.81538 3.99987 4.10158 4.13744 4.20512 4.22539 4.30000 4.34895 4.61813 4.71915 4.73282 4.84772 4.93696 4.99224 5.03465 5.13032 5.16776 5.18271 5.28280 5.69615 5.74047 6.19858 6.32057 6.38623 6.77372 6.99723 7.05468 7.08088 7.83646 8.02329 9.17593 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.001482 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.334603 B =18889.853671 C =19522.541388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.753 5.753 10 C 0.122 3.878 11 C 0.104 3.896 12 H 0.111 0.889 13 O -0.564 6.564 14 C 0.101 3.899 15 N -0.705 5.705 16 C 0.513 3.487 17 O -0.572 6.572 18 C 0.102 3.898 19 N -0.709 5.709 20 C 0.564 3.436 21 O -0.568 6.568 22 C -0.160 4.160 23 C -0.050 4.050 24 C -0.159 4.159 25 C 0.115 3.885 26 F -0.140 7.140 27 C -0.160 4.160 28 C -0.035 4.035 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.388 0.612 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.419 0.581 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.416 0.584 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.456 -16.348 0.394 37.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.399 5.399 10 C -0.005 4.005 11 C 0.044 3.956 12 H 0.128 0.872 13 O -0.371 6.371 14 C -0.024 4.024 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.452 6.452 18 C -0.024 4.024 19 N -0.364 5.364 20 C 0.353 3.647 21 O -0.449 6.449 22 C -0.163 4.163 23 C -0.069 4.069 24 C -0.178 4.178 25 C 0.095 3.905 26 F -0.118 7.118 27 C -0.178 4.178 28 C -0.054 4.054 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.238 0.762 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.256 0.744 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.256 0.744 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 33.566 -16.121 0.840 37.246 hybrid contribution -0.517 0.393 -0.380 0.752 sum 33.050 -15.728 0.459 36.604 Atomic orbital electron populations 1.69887 1.07193 1.26747 1.59515 1.25512 0.96087 1.01343 1.02471 0.85353 0.78508 0.79461 0.78051 1.20591 1.22393 1.17647 1.19050 0.82794 0.93492 1.41610 0.92493 1.42540 1.02271 1.04143 1.90938 1.21411 0.91182 0.88103 0.99770 1.22164 0.91648 0.91793 0.89967 0.87156 1.86532 1.85732 1.48297 1.16539 1.21889 0.79858 0.97070 1.03541 1.45673 1.06313 1.10320 1.73368 1.20663 0.88857 0.84935 0.75642 1.90702 1.80353 1.22600 1.51584 1.21150 0.87212 0.87623 1.06461 1.45593 1.06231 1.10370 1.74229 1.18319 0.81686 0.89023 0.75654 1.90788 1.68805 1.33872 1.51397 1.19933 0.94824 0.92688 1.08886 1.21404 1.01202 0.90225 0.94078 1.21355 0.92155 1.00722 1.03551 1.18222 0.90807 0.81411 1.00042 1.91524 1.80441 1.46372 1.93508 1.21338 1.02405 0.90246 1.03847 1.21228 0.92451 0.98844 0.92879 0.93317 0.79704 0.94675 0.94384 0.76237 0.90476 0.90181 0.74364 0.86669 0.86690 0.74426 0.82680 0.81989 0.82085 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.48 13.97 21.65 0.30 -62.18 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.96 45.09 27.74 68.60 1.90 46.99 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 7 C -0.24 -13.33 10.47 84.03 0.88 -12.45 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 N -0.75 -33.30 5.30 -343.46 -1.82 -35.12 16 10 C 0.12 4.02 5.92 86.38 0.51 4.53 16 11 C 0.10 2.37 3.09 30.59 0.09 2.47 16 12 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 13 O -0.56 -13.09 13.03 -148.98 -1.94 -15.04 16 14 C 0.10 1.86 5.31 86.38 0.46 2.32 16 15 N -0.70 -10.34 5.50 -463.05 -2.55 -12.89 16 16 C 0.51 8.42 7.90 87.66 0.69 9.11 16 17 O -0.57 -13.09 15.67 -3.04 -0.05 -13.14 16 18 C 0.10 1.31 6.15 85.63 0.53 1.84 16 19 N -0.71 -10.12 5.48 -469.82 -2.57 -12.69 16 20 C 0.56 9.66 7.77 86.75 0.67 10.33 16 21 O -0.57 -13.17 16.34 -3.93 -0.06 -13.23 16 22 C -0.16 -2.17 5.87 -20.09 -0.12 -2.29 16 23 C -0.05 -0.50 9.54 22.52 0.21 -0.28 16 24 C -0.16 -1.49 10.01 22.28 0.22 -1.27 16 25 C 0.11 1.31 7.31 22.47 0.16 1.48 16 26 F -0.14 -1.86 17.26 44.97 0.78 -1.08 16 27 C -0.16 -1.63 10.01 22.28 0.22 -1.41 16 28 C -0.04 -0.43 9.59 22.52 0.22 -0.22 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 30 H 0.37 15.88 5.40 -92.71 -0.50 15.38 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.39 7.16 9.04 -74.06 -0.67 6.49 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.42 4.61 8.47 -92.71 -0.79 3.82 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 5.34 5.47 -92.70 -0.51 4.83 16 40 H 0.16 0.97 6.40 -2.91 -0.02 0.95 16 41 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 42 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 43 H 0.15 1.77 7.65 -2.91 -0.02 1.75 16 Total: -1.00 -77.23 377.37 -2.20 -79.43 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -1.42 Total: 27.94 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.23 Total: 10.99 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -6.64 Total: -122.87 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -2.05 Total: -41.40 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Total: -77.23 -2.20 -79.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497105944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.561 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds