Wall clock time and date at job start Tue Mar 31 2020 23:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70449 * 124.58953 * 2 1 4 4 C 1.75507 * 92.44645 * 179.97438 * 3 2 1 5 5 C 1.32775 * 110.57539 * 359.71636 * 4 3 2 6 6 C 1.36009 * 124.59735 * 179.97438 * 2 1 3 7 7 C 1.47196 * 123.45550 * 0.02562 * 6 2 1 8 8 O 1.21632 * 119.99845 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99850 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47135 * 325.00366 * 10 9 7 12 12 C 1.53000 * 109.47129 * 85.00009 * 10 9 7 13 13 C 1.52995 * 109.47630 * 205.00405 * 10 9 7 14 14 C 1.53000 * 109.47152 * 64.99994 * 13 10 9 15 15 N 1.46899 * 109.47301 * 180.02562 * 14 13 10 16 16 C 1.46898 * 111.00118 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47173 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99949 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00143 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00111 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00021 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00291 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99762 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00226 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46870 * 90.00033 * 24 22 20 26 26 H 1.48500 * 109.46932 * 209.99900 * 24 22 20 27 27 H 1.48502 * 109.47074 * 330.00044 * 24 22 20 28 28 H 1.08997 * 109.47531 * 269.99930 * 1 2 3 29 29 H 1.08998 * 109.47334 * 30.00603 * 1 2 3 30 30 H 1.09003 * 109.46798 * 149.99976 * 1 2 3 31 31 H 1.07997 * 124.71155 * 179.97438 * 4 3 2 32 32 H 1.07998 * 123.45831 * 180.28337 * 5 4 3 33 33 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 34 34 H 1.08992 * 109.47302 * 180.02562 * 12 10 9 35 35 H 1.09006 * 109.47229 * 300.00705 * 12 10 9 36 36 H 1.09002 * 109.46821 * 60.00164 * 12 10 9 37 37 H 1.08994 * 109.47690 * 185.00185 * 13 10 9 38 38 H 1.09003 * 109.47048 * 305.00005 * 13 10 9 39 39 H 1.09004 * 109.46980 * 300.00055 * 14 13 10 40 40 H 1.08995 * 109.47311 * 60.00363 * 14 13 10 41 41 H 1.00903 * 110.99925 * 303.95782 * 15 14 13 42 42 H 1.08991 * 109.47145 * 299.99792 * 16 15 14 43 43 H 1.08997 * 109.47117 * 60.00092 * 16 15 14 44 44 H 0.97003 * 119.99447 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99890 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 0.0008 5 6 3.6944 -0.8313 0.0072 6 6 2.2792 -1.1196 0.0005 7 6 1.7291 -2.4849 0.0006 8 8 0.5247 -2.6552 -0.0003 9 7 2.5598 -3.5461 0.0006 10 6 2.0124 -4.9050 0.0012 11 1 1.0960 -4.9272 0.5910 12 6 1.7047 -5.3315 -1.4356 13 6 3.0346 -5.8664 0.6107 14 6 3.2489 -5.5158 2.0845 15 7 4.2307 -6.4385 2.6697 16 6 4.4627 -6.1309 4.0872 17 6 5.4727 -7.0963 4.6520 18 8 5.9524 -7.9558 3.9433 19 7 5.8429 -7.0047 5.9447 20 6 6.7621 -7.8826 6.4584 21 1 7.1892 -8.6479 5.8273 22 6 7.1441 -7.7879 7.7910 23 7 6.6240 -6.8570 8.5590 24 14 8.3961 -8.9846 8.4911 25 1 9.7624 -8.4291 8.3179 26 1 8.1263 -9.1939 9.9363 27 1 8.2947 -10.2819 7.7755 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 4.9537 0.8939 0.0006 32 1 4.4577 -1.5953 0.0133 33 1 3.5203 -3.4102 0.0009 34 1 1.2969 -6.3422 -1.4351 35 1 0.9764 -4.6464 -1.8699 36 1 2.6211 -5.3092 -2.0253 37 1 2.6648 -6.8886 0.5306 38 1 3.9800 -5.7790 0.0753 39 1 3.6187 -4.4935 2.1647 40 1 2.3036 -5.6032 2.6200 41 1 3.9415 -7.3978 2.5501 42 1 4.8408 -5.1129 4.1809 43 1 3.5260 -6.2227 4.6369 44 1 5.4595 -6.3171 6.5114 45 1 6.8910 -6.7906 9.4892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497182612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:54 Heat of formation + Delta-G solvation = -77.997660 kcal Electronic energy + Delta-G solvation = -25979.320207 eV Core-core repulsion = 22121.781060 eV Total energy + Delta-G solvation = -3857.539147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13269 -40.16694 -38.42716 -37.54851 -36.30246 -35.70996 -33.30837 -33.05087 -32.49728 -30.36472 -28.07391 -27.78108 -25.82954 -24.85224 -23.30342 -22.66694 -21.77236 -21.07139 -20.44539 -19.90595 -18.26617 -17.85278 -17.59185 -17.29832 -16.87822 -16.46890 -16.18665 -15.97839 -15.60508 -15.38310 -15.12568 -14.85777 -14.61801 -14.53770 -14.38660 -14.15502 -13.83979 -13.59159 -13.57858 -13.49459 -13.20343 -13.03737 -12.93233 -12.79541 -12.54871 -12.42943 -12.21776 -12.12045 -12.10976 -11.97145 -11.76893 -11.51220 -10.76014 -10.36730 -10.14839 -10.02715 -9.72224 -9.38279 -9.35670 -8.47334 -5.96341 -0.18473 0.55829 0.96896 1.02459 1.38025 1.41845 1.54761 2.03747 2.28693 2.30404 2.36245 2.87487 3.19828 3.47769 3.72739 3.83903 3.95822 4.03927 4.10155 4.19709 4.31624 4.40772 4.43630 4.49753 4.52338 4.61020 4.63882 4.66074 4.67976 4.83268 4.89389 4.97410 5.05045 5.09429 5.19644 5.26183 5.31200 5.33373 5.40400 5.58430 5.87170 6.08288 6.39078 6.56845 6.58842 7.11522 7.24634 7.54894 8.09800 8.70122 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.001948 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.139477 B =14370.155577 C =15691.650785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.161 4.161 3 S 0.211 5.789 4 C -0.234 4.234 5 C -0.115 4.115 6 C -0.198 4.198 7 C 0.577 3.423 8 O -0.573 6.573 9 N -0.708 5.708 10 C 0.150 3.850 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.114 4.114 14 C 0.062 3.938 15 N -0.679 5.679 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.194 0.806 32 H 0.166 0.834 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.345 0.655 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 17.601 -18.998 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.282 4.282 3 S 0.477 5.523 4 C -0.369 4.369 5 C -0.143 4.143 6 C -0.216 4.216 7 C 0.364 3.636 8 O -0.455 6.455 9 N -0.360 5.360 10 C 0.045 3.955 11 H 0.091 0.909 12 C -0.214 4.214 13 C -0.152 4.152 14 C -0.067 4.067 15 N -0.311 5.311 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.211 0.789 32 H 0.183 0.817 33 H 0.247 0.753 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.164 0.836 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.649 18.836 -19.475 29.111 hybrid contribution 0.307 -2.079 1.330 2.487 sum -10.342 16.757 -18.145 26.777 Atomic orbital electron populations 1.20588 0.86826 1.04244 1.03497 1.24821 1.02416 0.98081 1.02838 1.82969 0.94475 1.05867 1.69003 1.25799 1.03456 0.97029 1.10572 1.21392 0.93836 0.97451 1.01659 1.20268 0.93986 0.93139 1.14172 1.17836 0.85812 0.84610 0.75315 1.90704 1.15861 1.86662 1.52289 1.45934 1.10428 1.05283 1.74354 1.20895 0.96895 0.80428 0.97309 0.90915 1.22099 1.02060 1.01933 0.95313 1.21775 0.99718 0.99584 0.94119 1.22019 0.92667 0.96885 0.95101 1.60101 1.49051 1.08192 1.13776 1.21526 0.96774 0.98780 0.89757 1.20845 0.86564 0.87806 0.82235 1.90485 1.60244 1.40296 1.59810 1.41947 1.38767 1.30905 1.09451 1.19679 1.19598 1.12088 0.94969 0.90209 1.26071 1.00175 0.99305 0.95836 1.69678 1.44411 1.34130 1.07991 0.84913 0.77917 0.77984 0.77440 1.19560 1.19578 1.19692 0.90381 0.89665 0.89854 0.78916 0.81709 0.75275 0.90371 0.93661 0.91351 0.89408 0.89701 0.90707 0.95353 0.83636 0.87941 0.92049 0.77018 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.60 71.23 0.68 -0.94 16 2 C -0.16 -2.91 6.34 25.17 0.16 -2.75 16 3 S 0.21 2.63 22.97 -56.49 -1.30 1.33 16 4 C -0.23 -2.76 11.12 66.64 0.74 -2.02 16 5 C -0.12 -1.64 9.91 22.67 0.22 -1.42 16 6 C -0.20 -3.84 5.98 -19.87 -0.12 -3.96 16 7 C 0.58 12.96 7.76 86.60 0.67 13.64 16 8 O -0.57 -16.33 13.72 -4.13 -0.06 -16.39 16 9 N -0.71 -12.46 4.51 -446.03 -2.01 -14.47 16 10 C 0.15 2.66 2.57 44.99 0.12 2.77 16 11 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 12 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 13 C -0.11 -2.00 5.01 30.59 0.15 -1.84 16 14 C 0.06 1.39 5.57 86.30 0.48 1.87 16 15 N -0.68 -20.67 6.13 -517.95 -3.17 -23.85 16 16 C 0.06 2.20 6.17 85.56 0.53 2.73 16 17 C 0.44 20.87 7.82 87.66 0.69 21.56 16 18 O -0.62 -34.35 15.78 -3.06 -0.05 -34.40 16 19 N -0.57 -29.58 5.29 -306.99 -1.62 -31.21 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 24 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.83 5.94 -2.39 -0.01 1.81 16 31 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.17 1.65 7.10 -2.91 -0.02 1.63 16 33 H 0.41 5.58 7.15 -92.71 -0.66 4.92 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 40 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.35 10.98 8.43 -89.69 -0.76 10.23 16 42 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 45 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -72.07 391.61 -0.72 -72.79 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -1.11 Total: 41.53 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.29 Total: 9.35 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.52 Total: -119.12 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.11 Total: -50.79 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.30 Total: 1.33 kcal Total: -72.07 -0.72 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497182612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.210 kcal (2) G-P(sol) polarization free energy of solvation -72.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds