Wall clock time and date at job start Tue Mar 31 2020 23:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70453 * 124.59444 * 2 1 4 4 C 1.75501 * 92.44689 * 179.97438 * 3 2 1 5 5 C 1.32774 * 110.57531 * 359.73719 * 4 3 2 6 6 C 1.36010 * 124.59139 * 179.97438 * 2 1 3 7 7 C 1.47193 * 123.45890 * 359.97438 * 6 2 1 8 8 O 1.21638 * 119.99924 * 0.02562 * 7 6 2 9 9 N 1.34775 * 119.99565 * 179.97438 * 7 6 2 10 10 C 1.46507 * 119.99633 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46491 * 35.00808 * 10 9 7 12 12 C 1.53001 * 109.47271 * 275.00510 * 10 9 7 13 13 C 1.53006 * 109.46847 * 155.00283 * 10 9 7 14 14 C 1.52999 * 109.46997 * 295.00407 * 13 10 9 15 15 N 1.46906 * 109.46897 * 180.02562 * 14 13 10 16 16 C 1.46898 * 110.99888 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99698 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00271 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47454 * 89.99743 * 24 22 20 26 26 H 1.48497 * 109.47239 * 210.00393 * 24 22 20 27 27 H 1.48506 * 109.46789 * 329.99864 * 24 22 20 28 28 H 1.08997 * 109.47355 * 270.00025 * 1 2 3 29 29 H 1.09000 * 109.46689 * 30.00203 * 1 2 3 30 30 H 1.09001 * 109.46994 * 150.00009 * 1 2 3 31 31 H 1.08000 * 124.71080 * 179.97438 * 4 3 2 32 32 H 1.07996 * 123.46030 * 180.22865 * 5 4 3 33 33 H 0.96999 * 120.00755 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.46998 * 300.00050 * 12 10 9 35 35 H 1.09002 * 109.47083 * 60.00034 * 12 10 9 36 36 H 1.08994 * 109.46630 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46866 * 175.00194 * 13 10 9 38 38 H 1.09001 * 109.46611 * 55.00311 * 13 10 9 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 41 41 H 1.00902 * 110.99923 * 303.95801 * 15 14 13 42 42 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 43 43 H 1.08997 * 109.47334 * 60.00212 * 16 15 14 44 44 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 45 45 H 0.97005 * 120.00698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4032 0.0000 4 6 3.9607 0.4693 0.0008 5 6 3.6944 -0.8314 0.0067 6 6 2.2791 -1.1197 0.0005 7 6 1.7290 -2.4849 0.0017 8 8 0.5246 -2.6552 0.0018 9 7 2.5597 -3.5461 0.0016 10 6 2.0121 -4.9050 0.0033 11 1 1.0949 -4.9278 -0.5852 12 6 1.7064 -5.3299 1.4410 13 6 3.0335 -5.8672 -0.6067 14 6 3.2458 -5.5181 -2.0811 15 7 4.2260 -6.4423 -2.6669 16 6 4.4551 -6.1370 -4.0854 17 6 5.4634 -7.1038 -4.6508 18 8 5.9442 -7.9624 -3.9417 19 7 5.8309 -7.0144 -5.9444 20 6 6.7486 -7.8936 -6.4587 21 1 7.1767 -8.6582 -5.8272 22 6 7.1271 -7.8018 -7.7924 23 7 6.6058 -6.8719 -8.5608 24 14 8.3769 -9.0002 -8.4933 25 1 7.6725 -10.1909 -9.0330 26 1 9.1390 -8.3396 -9.5833 27 1 9.3129 -9.4229 -7.4207 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.9538 0.8938 0.0006 32 1 4.4576 -1.5955 0.0119 33 1 3.5202 -3.4104 0.0011 34 1 2.6236 -5.3071 2.0294 35 1 0.9787 -4.6444 1.8755 36 1 1.2994 -6.3410 1.4422 37 1 2.6637 -6.8893 -0.5248 38 1 3.9796 -5.7792 -0.0725 39 1 3.6155 -4.4960 -2.1629 40 1 2.2997 -5.6061 -2.6152 41 1 5.0918 -6.4272 -2.1489 42 1 3.5172 -6.2291 -4.6330 43 1 4.8335 -5.1193 -4.1815 44 1 5.4467 -6.3275 -6.5114 45 1 6.8698 -6.8080 -9.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497182613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:59 Heat of formation + Delta-G solvation = -54.038628 kcal Electronic energy + Delta-G solvation = -25984.316687 eV Core-core repulsion = 22127.816482 eV Total energy + Delta-G solvation = -3856.500205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35593 -38.35116 -37.64710 -36.65284 -35.01626 -33.83140 -32.39074 -31.73690 -31.20958 -29.29155 -27.43056 -26.22348 -24.39571 -23.92525 -22.38482 -21.89892 -20.98009 -19.76108 -19.21275 -17.88845 -17.65205 -16.90324 -16.45073 -16.16649 -15.53027 -15.35204 -14.89865 -14.66716 -14.38946 -14.18155 -13.90350 -13.80691 -13.70481 -13.60631 -13.56172 -13.06956 -12.97256 -12.69545 -12.41262 -12.25085 -12.21369 -11.93350 -11.68747 -11.51886 -11.42102 -11.31432 -11.12878 -11.04744 -10.94158 -10.39701 -10.22017 -9.95194 -9.51222 -9.37547 -9.13769 -8.81294 -8.46260 -8.06174 -7.96106 -6.41824 -3.82795 0.45133 1.11502 1.52411 1.63173 3.02962 3.11958 3.17787 3.26292 3.32020 3.90592 4.04301 4.25483 4.29768 4.51628 4.71741 4.79581 4.84868 4.96987 4.98864 5.17556 5.19500 5.24336 5.27959 5.30124 5.36719 5.51985 5.52652 5.54880 5.60908 5.76212 5.78415 5.87211 5.89764 5.94167 5.97557 6.02219 6.08546 6.27048 6.34471 7.20611 7.28138 7.54963 7.65851 8.01267 8.06168 8.61075 9.17624 9.54193 10.05573 10.75934 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.001947 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.132962 B =14379.157717 C =15688.127382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.138 4.138 3 S 0.176 5.824 4 C -0.234 4.234 5 C -0.105 4.105 6 C -0.179 4.179 7 C 0.582 3.418 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.144 3.856 11 H 0.091 0.909 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.059 3.941 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 17.763 19.225 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.258 4.258 3 S 0.442 5.558 4 C -0.369 4.369 5 C -0.135 4.135 6 C -0.196 4.196 7 C 0.369 3.631 8 O -0.417 6.417 9 N -0.370 5.370 10 C 0.039 3.961 11 H 0.110 0.890 12 C -0.220 4.220 13 C -0.163 4.163 14 C -0.070 4.070 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.187 0.813 32 H 0.165 0.835 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.167 0.833 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.133 18.130 19.352 28.760 hybrid contribution 1.889 -0.734 -0.810 2.183 sum -9.243 17.396 18.542 27.053 Atomic orbital electron populations 1.20653 0.86678 1.04517 1.03573 1.24573 1.01902 0.96858 1.02479 1.83131 0.95075 1.07446 1.70176 1.25420 1.02400 0.97249 1.11816 1.21219 0.94509 0.96438 1.01287 1.20157 0.92733 0.93761 1.12906 1.17532 0.86110 0.83680 0.75814 1.90728 1.14420 1.86086 1.50456 1.46002 1.09912 1.05790 1.75253 1.21011 0.97876 0.80196 0.97008 0.89048 1.22155 1.01915 1.01890 0.96018 1.21887 0.99062 1.00122 0.95251 1.21968 0.97147 0.93500 0.94414 1.60058 1.15596 1.52452 1.02038 1.21664 0.99697 0.96868 0.89949 1.19815 0.86240 0.87956 0.83366 1.90517 1.58609 1.38395 1.59274 1.41873 1.38727 1.30898 1.08564 1.19706 1.17774 1.11172 0.94236 0.87915 1.25267 0.98800 0.97817 0.96104 1.69612 1.43963 1.33308 1.07457 0.85853 0.80101 0.79761 0.78542 1.20367 1.20941 1.19424 0.90229 0.91528 0.87633 0.81329 0.83481 0.76645 0.92473 0.92163 0.91311 0.89013 0.91356 0.95634 0.91062 0.83318 0.89637 0.93990 0.77454 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.60 36.01 0.35 -0.47 16 2 C -0.14 -1.26 6.34 -35.11 -0.22 -1.49 16 3 S 0.18 1.23 22.97 -107.50 -2.47 -1.24 16 4 C -0.23 -1.60 11.12 28.86 0.32 -1.28 16 5 C -0.11 -0.82 9.91 -39.02 -0.39 -1.20 16 6 C -0.18 -1.75 5.98 -104.63 -0.63 -2.38 16 7 C 0.58 6.46 7.75 -12.62 -0.10 6.36 16 8 O -0.54 -7.37 13.72 5.24 0.07 -7.29 16 9 N -0.72 -6.46 4.51 -54.95 -0.25 -6.71 16 10 C 0.14 1.33 2.58 -67.92 -0.17 1.16 16 11 H 0.09 1.00 7.57 -51.93 -0.39 0.60 16 12 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 13 C -0.12 -1.20 5.01 -26.73 -0.13 -1.33 16 14 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 15 N -0.67 -10.64 6.12 -115.06 -0.70 -11.35 16 16 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 17 C 0.44 10.49 7.82 -10.98 -0.09 10.40 16 18 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 19 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.68 13.05 55.49 0.72 -23.95 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 1.11 5.94 -51.93 -0.31 0.80 16 31 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.15 0.84 7.10 -52.49 -0.37 0.47 16 33 H 0.40 2.85 7.15 -40.82 -0.29 2.56 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.29 7.75 -51.93 -0.40 -0.11 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -33.27 391.61 -9.30 -42.57 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -6.58 Total: 14.03 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.00 Total: 2.27 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.29 Total: -56.49 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.47 Total: -1.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.27 -9.30 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497182613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.468 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds