Wall clock time and date at job start Tue Mar 31 2020 23:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70453 * 124.59444 * 2 1 4 4 C 1.75501 * 92.44689 * 179.97438 * 3 2 1 5 5 C 1.32774 * 110.57531 * 359.73719 * 4 3 2 6 6 C 1.36010 * 124.59139 * 179.97438 * 2 1 3 7 7 C 1.47193 * 123.45890 * 359.97438 * 6 2 1 8 8 O 1.21638 * 119.99924 * 0.02562 * 7 6 2 9 9 N 1.34775 * 119.99565 * 179.97438 * 7 6 2 10 10 C 1.46507 * 119.99633 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46491 * 35.00808 * 10 9 7 12 12 C 1.53001 * 109.47271 * 275.00510 * 10 9 7 13 13 C 1.53006 * 109.46847 * 155.00283 * 10 9 7 14 14 C 1.52999 * 109.46997 * 295.00407 * 13 10 9 15 15 N 1.46906 * 109.46897 * 180.02562 * 14 13 10 16 16 C 1.46898 * 110.99888 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99698 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00271 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47454 * 89.99743 * 24 22 20 26 26 H 1.48497 * 109.47239 * 210.00393 * 24 22 20 27 27 H 1.48506 * 109.46789 * 329.99864 * 24 22 20 28 28 H 1.08997 * 109.47355 * 270.00025 * 1 2 3 29 29 H 1.09000 * 109.46689 * 30.00203 * 1 2 3 30 30 H 1.09001 * 109.46994 * 150.00009 * 1 2 3 31 31 H 1.08000 * 124.71080 * 179.97438 * 4 3 2 32 32 H 1.07996 * 123.46030 * 180.22865 * 5 4 3 33 33 H 0.96999 * 120.00755 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.46998 * 300.00050 * 12 10 9 35 35 H 1.09002 * 109.47083 * 60.00034 * 12 10 9 36 36 H 1.08994 * 109.46630 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46866 * 175.00194 * 13 10 9 38 38 H 1.09001 * 109.46611 * 55.00311 * 13 10 9 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 41 41 H 1.00902 * 110.99923 * 303.95801 * 15 14 13 42 42 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 43 43 H 1.08997 * 109.47334 * 60.00212 * 16 15 14 44 44 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 45 45 H 0.97005 * 120.00698 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4032 0.0000 4 6 3.9607 0.4693 0.0008 5 6 3.6944 -0.8314 0.0067 6 6 2.2791 -1.1197 0.0005 7 6 1.7290 -2.4849 0.0017 8 8 0.5246 -2.6552 0.0018 9 7 2.5597 -3.5461 0.0016 10 6 2.0121 -4.9050 0.0033 11 1 1.0949 -4.9278 -0.5852 12 6 1.7064 -5.3299 1.4410 13 6 3.0335 -5.8672 -0.6067 14 6 3.2458 -5.5181 -2.0811 15 7 4.2260 -6.4423 -2.6669 16 6 4.4551 -6.1370 -4.0854 17 6 5.4634 -7.1038 -4.6508 18 8 5.9442 -7.9624 -3.9417 19 7 5.8309 -7.0144 -5.9444 20 6 6.7486 -7.8936 -6.4587 21 1 7.1767 -8.6582 -5.8272 22 6 7.1271 -7.8018 -7.7924 23 7 6.6058 -6.8719 -8.5608 24 14 8.3769 -9.0002 -8.4933 25 1 7.6725 -10.1909 -9.0330 26 1 9.1390 -8.3396 -9.5833 27 1 9.3129 -9.4229 -7.4207 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.9538 0.8938 0.0006 32 1 4.4576 -1.5955 0.0119 33 1 3.5202 -3.4104 0.0011 34 1 2.6236 -5.3071 2.0294 35 1 0.9787 -4.6444 1.8755 36 1 1.2994 -6.3410 1.4422 37 1 2.6637 -6.8893 -0.5248 38 1 3.9796 -5.7792 -0.0725 39 1 3.6155 -4.4960 -2.1629 40 1 2.2997 -5.6061 -2.6152 41 1 5.0918 -6.4272 -2.1489 42 1 3.5172 -6.2291 -4.6330 43 1 4.8335 -5.1193 -4.1815 44 1 5.4467 -6.3275 -6.5114 45 1 6.8698 -6.8080 -9.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497182613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:58 Heat of formation + Delta-G solvation = -77.893251 kcal Electronic energy + Delta-G solvation = -25985.351101 eV Core-core repulsion = 22127.816482 eV Total energy + Delta-G solvation = -3857.534619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14180 -40.16598 -38.43555 -37.55633 -36.30124 -35.70847 -33.30835 -33.05826 -32.50706 -30.36388 -28.08306 -27.78144 -25.82796 -24.86568 -23.31299 -22.66048 -21.80844 -21.05896 -20.45144 -19.90739 -18.27533 -17.85554 -17.60012 -17.26610 -16.90809 -16.47227 -16.17681 -15.97414 -15.62016 -15.34277 -15.18796 -14.94713 -14.67440 -14.45830 -14.30737 -14.20602 -13.80911 -13.61438 -13.54684 -13.47689 -13.24487 -13.02869 -12.92758 -12.80179 -12.56001 -12.42791 -12.26294 -12.13219 -12.04563 -11.97706 -11.78962 -11.51281 -10.77434 -10.37605 -10.15520 -10.02658 -9.73210 -9.39712 -9.32600 -8.47213 -5.96296 -0.19435 0.54633 0.96129 1.00975 1.38080 1.41912 1.54747 2.03875 2.28692 2.29152 2.35469 2.87924 3.19957 3.48607 3.71483 3.82242 3.91802 4.02702 4.17042 4.21315 4.30087 4.40308 4.44069 4.46279 4.52537 4.60578 4.62783 4.64890 4.67999 4.81461 4.91764 4.98850 5.04351 5.09462 5.19544 5.25501 5.29958 5.32947 5.40421 5.58059 5.87602 6.08753 6.42606 6.55757 6.58938 7.11601 7.23990 7.55030 8.09897 8.70230 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.001947 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.132962 B =14379.157717 C =15688.127382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.161 4.161 3 S 0.211 5.789 4 C -0.234 4.234 5 C -0.115 4.115 6 C -0.199 4.199 7 C 0.576 3.424 8 O -0.573 6.573 9 N -0.708 5.708 10 C 0.150 3.850 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.113 4.113 14 C 0.063 3.937 15 N -0.682 5.682 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.194 0.806 32 H 0.166 0.834 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.347 0.653 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 18.872 19.491 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.282 4.282 3 S 0.477 5.523 4 C -0.369 4.369 5 C -0.143 4.143 6 C -0.216 4.216 7 C 0.364 3.636 8 O -0.454 6.454 9 N -0.360 5.360 10 C 0.045 3.955 11 H 0.091 0.909 12 C -0.214 4.214 13 C -0.151 4.151 14 C -0.066 4.066 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.211 0.789 32 H 0.183 0.817 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.166 0.834 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.152 19.264 19.619 29.310 hybrid contribution 1.554 -1.015 -0.852 2.042 sum -8.598 18.249 18.768 27.553 Atomic orbital electron populations 1.20590 0.86840 1.04152 1.03598 1.24827 1.02424 0.98096 1.02807 1.82985 0.94485 1.05866 1.68974 1.25800 1.03461 0.97040 1.10561 1.21380 0.93793 0.97432 1.01737 1.20272 0.94012 0.93124 1.14181 1.17843 0.85831 0.84616 0.75327 1.90711 1.15883 1.86658 1.52195 1.45923 1.10346 1.05288 1.74436 1.20897 0.97041 0.80308 0.97293 0.90898 1.22094 1.02086 1.01908 0.95294 1.21771 0.99736 0.99866 0.93753 1.22004 0.95744 0.93352 0.95481 1.60048 1.16156 1.54148 1.01071 1.21517 0.98222 0.95987 0.91059 1.20851 0.86121 0.87996 0.82484 1.90484 1.60090 1.40239 1.60033 1.41951 1.38823 1.30880 1.09427 1.19681 1.19603 1.12113 0.94940 0.90212 1.26065 1.00201 0.99280 0.95828 1.69673 1.44576 1.34088 1.07875 0.84915 0.77746 0.77770 0.77835 1.19711 1.19508 1.19615 0.90041 0.89825 0.90033 0.78890 0.81668 0.75363 0.91279 0.93671 0.90472 0.89304 0.89882 0.94401 0.91599 0.83439 0.88356 0.91643 0.77016 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.60 71.24 0.68 -0.93 16 2 C -0.16 -2.87 6.34 25.17 0.16 -2.71 16 3 S 0.21 2.56 22.97 -56.49 -1.30 1.26 16 4 C -0.23 -2.63 11.12 66.64 0.74 -1.88 16 5 C -0.12 -1.56 9.91 22.67 0.22 -1.34 16 6 C -0.20 -3.77 5.98 -19.87 -0.12 -3.89 16 7 C 0.58 12.78 7.75 86.60 0.67 13.45 16 8 O -0.57 -16.28 13.72 -4.15 -0.06 -16.34 16 9 N -0.71 -12.06 4.51 -445.99 -2.01 -14.07 16 10 C 0.15 2.65 2.58 44.99 0.12 2.77 16 11 H 0.07 1.60 7.57 -2.39 -0.02 1.58 16 12 C -0.16 -2.49 9.48 71.98 0.68 -1.80 16 13 C -0.11 -1.98 5.01 30.60 0.15 -1.83 16 14 C 0.06 1.40 5.57 86.30 0.48 1.88 16 15 N -0.68 -20.75 6.12 -517.92 -3.17 -23.92 16 16 C 0.06 2.22 6.17 85.56 0.53 2.75 16 17 C 0.44 20.88 7.82 87.66 0.69 21.56 16 18 O -0.62 -34.37 15.78 -3.05 -0.05 -34.42 16 19 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.88 13.05 21.66 0.28 -49.59 16 24 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.83 5.94 -2.39 -0.01 1.81 16 31 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.17 1.47 7.10 -2.91 -0.02 1.45 16 33 H 0.41 5.09 7.15 -92.71 -0.66 4.43 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.35 10.69 8.43 -89.69 -0.76 9.93 16 42 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 45 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -72.55 391.61 -0.72 -73.27 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -1.11 Total: 40.57 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 6.29 Total: 9.55 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -6.52 Total: -118.80 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.11 Total: -50.76 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.30 Total: 1.26 kcal Total: -72.55 -0.72 -73.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497182613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.623 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds