Wall clock time and date at job start Tue Mar 31 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49978 * 299.93716 * 10 9 7 12 12 O 1.42900 * 109.46718 * 59.99870 * 11 10 9 13 13 C 1.53043 * 109.49580 * 179.83731 * 10 9 7 14 14 C 1.53036 * 109.54027 * 301.41786 * 13 10 9 15 15 C 1.53187 * 109.31230 * 298.63421 * 14 13 10 16 16 N 1.46922 * 108.77857 * 54.63534 * 15 14 13 17 17 C 1.34775 * 120.63610 * 126.41416 * 16 15 14 18 18 O 1.21280 * 120.00482 * 179.97438 * 17 16 15 19 19 C 1.50706 * 119.99528 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.47038 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47345 * 180.02562 * 20 19 17 22 22 N 1.29028 * 124.91440 * 90.00046 * 21 20 19 23 23 C 1.31782 * 117.12331 * 179.97438 * 22 21 20 24 24 C 1.33634 * 114.50012 * 0.02562 * 23 22 21 25 25 S 1.70976 * 124.91699 * 269.69872 * 21 20 19 26 26 C 1.46931 * 118.73833 * 306.39404 * 16 15 14 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46778 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.46916 * 300.00381 * 11 10 9 31 31 H 0.96704 * 113.99357 * 180.02562 * 12 11 10 32 32 H 1.09005 * 109.45284 * 61.43647 * 13 10 9 33 33 H 1.08998 * 109.45954 * 181.39024 * 13 10 9 34 34 H 1.09002 * 109.49735 * 178.67894 * 14 13 10 35 35 H 1.09003 * 109.52693 * 58.59749 * 14 13 10 36 36 H 1.09002 * 109.58915 * 294.84962 * 15 14 13 37 37 H 1.09002 * 109.58989 * 174.42575 * 15 14 13 38 38 H 1.08993 * 109.47509 * 300.00479 * 19 17 16 39 39 H 1.08998 * 109.46966 * 60.00776 * 19 17 16 40 40 H 1.09000 * 109.47627 * 300.00921 * 20 19 17 41 41 H 1.09002 * 109.46786 * 60.00164 * 20 19 17 42 42 H 1.07999 * 122.74788 * 179.97438 * 23 22 21 43 43 H 1.08008 * 126.03765 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.58577 * 293.82227 * 26 16 15 45 45 H 1.09002 * 109.58928 * 173.39363 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9318 -3.7365 -1.2649 12 8 3.8606 -2.6505 -1.2677 13 6 1.0639 -4.8205 -0.0062 14 6 0.1677 -4.7224 1.2304 15 6 1.0319 -4.8190 2.4915 16 7 2.0823 -3.7939 2.4247 17 6 2.2528 -2.9185 3.4352 18 8 3.1237 -2.0771 3.3683 19 6 1.3611 -2.9851 4.6483 20 6 1.7631 -1.8894 5.6376 21 6 0.8719 -1.9564 6.8509 22 7 1.1145 -2.6557 7.9077 23 6 0.2279 -2.6008 8.8812 24 6 -0.8212 -1.8116 8.6313 25 16 -0.6034 -1.1109 7.0294 26 6 2.9436 -3.7414 1.2355 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 3.4762 -4.6808 -1.2688 30 1 2.3010 -3.6774 -2.1519 31 1 4.4481 -2.6376 -2.0357 32 1 0.4488 -4.7766 -0.9050 33 1 1.6094 -5.7639 0.0146 34 1 -0.5553 -5.5381 1.2214 35 1 -0.3599 -3.7686 1.2232 36 1 1.4888 -5.8071 2.5466 37 1 0.4127 -4.6509 3.3727 38 1 0.3242 -2.8392 4.3456 39 1 1.4670 -3.9601 5.1239 40 1 2.8000 -2.0357 5.9402 41 1 1.6576 -0.9142 5.1622 42 1 0.3395 -3.1493 9.8047 43 1 -1.6535 -1.6316 9.2958 44 1 3.5563 -4.6416 1.1881 45 1 3.5858 -2.8622 1.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502600458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:12 Heat of formation + Delta-G solvation = -19.214433 kcal Electronic energy + Delta-G solvation = -28469.875215 eV Core-core repulsion = 24614.885100 eV Total energy + Delta-G solvation = -3854.990115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97032 -39.58205 -37.80836 -35.72747 -33.89329 -33.64301 -32.20318 -31.03549 -29.76482 -28.55674 -26.67410 -25.29483 -24.72258 -23.46478 -22.87495 -21.65862 -19.95319 -19.16116 -18.18501 -18.08153 -17.26527 -16.59623 -16.19032 -15.66333 -15.56523 -15.29417 -14.83982 -14.39916 -14.13847 -14.11081 -13.85492 -13.62897 -13.21051 -13.17838 -13.06726 -12.60043 -12.51200 -12.12765 -12.04520 -11.88319 -11.58157 -11.52452 -11.13311 -10.98931 -10.78253 -10.68445 -10.59778 -10.41604 -10.12690 -9.70122 -9.68559 -9.52710 -9.47682 -9.23404 -8.96830 -8.91414 -8.75793 -7.99314 -6.78458 -5.54804 -2.80283 0.62758 1.31077 1.71919 2.74362 3.23012 3.54751 3.59652 3.64727 3.71657 4.11690 4.76835 4.79971 4.84000 5.03882 5.05621 5.15377 5.18014 5.24938 5.26347 5.38696 5.46322 5.50075 5.59993 5.66553 5.79738 5.81073 5.88597 5.90168 5.91228 6.05217 6.07405 6.12793 6.20155 6.20790 6.28716 6.39976 6.65271 6.80564 6.94101 7.16099 7.66611 8.00724 8.18929 8.38794 8.63294 8.81646 9.77059 10.24572 10.60436 11.68856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003922 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.069469 B = 7137.667289 C = 8419.625186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.023 4.023 3 Si 0.900 3.100 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.196 4.196 8 H 0.091 0.909 9 N -0.703 5.703 10 C 0.188 3.812 11 C 0.076 3.924 12 O -0.540 6.540 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.110 3.890 16 N -0.594 5.594 17 C 0.522 3.478 18 O -0.530 6.530 19 C -0.130 4.130 20 C -0.031 4.031 21 C 0.060 3.940 22 N -0.479 5.479 23 C 0.038 3.962 24 C -0.272 4.272 25 S 0.133 5.867 26 C 0.112 3.888 27 H 0.248 0.752 28 H 0.381 0.619 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.354 0.646 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.173 0.827 43 H 0.175 0.825 44 H 0.043 0.957 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -12.206 10.479 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.216 4.216 3 Si 0.733 3.267 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.327 4.327 8 H 0.109 0.891 9 N -0.343 5.343 10 C 0.095 3.905 11 C -0.006 4.006 12 O -0.343 6.343 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.013 4.013 16 N -0.327 5.327 17 C 0.310 3.690 18 O -0.406 6.406 19 C -0.171 4.171 20 C -0.072 4.072 21 C -0.217 4.217 22 N -0.194 5.194 23 C -0.114 4.114 24 C -0.412 4.412 25 S 0.387 5.613 26 C -0.013 4.013 27 H 0.058 0.942 28 H 0.216 0.784 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.198 0.802 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.190 0.810 43 H 0.192 0.808 44 H 0.061 0.939 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.684 -11.070 10.437 15.307 hybrid contribution 0.180 0.247 0.248 0.393 sum -1.504 -10.822 10.685 15.282 Atomic orbital electron populations 1.69657 1.04974 1.24955 1.60268 1.24633 0.95324 0.97345 1.04334 0.86239 0.79043 0.84386 0.77013 1.22423 1.22430 1.20710 1.19533 0.91962 0.83024 1.38217 0.89100 1.42421 1.05173 0.99277 1.87464 1.19953 0.90920 0.88054 0.91604 1.22756 0.91026 0.87497 0.99277 1.86883 1.50454 1.49651 1.47263 1.21614 0.97808 0.97550 0.98346 1.21865 0.97794 1.03153 0.94254 1.21645 0.89700 0.91166 0.98806 1.47730 1.34143 1.32190 1.18629 1.20130 0.84592 0.80622 0.83701 1.90705 1.34814 1.35145 1.79938 1.21605 1.00929 1.00241 0.94349 1.20044 0.98127 1.00845 0.88196 1.27235 0.98369 0.97405 0.98705 1.66328 1.30687 1.21760 1.00578 1.21797 0.90191 1.00227 0.99175 1.27109 1.06029 1.06833 1.01195 1.84381 1.19920 1.44922 1.12043 1.22090 0.92871 1.01827 0.84494 0.94206 0.78399 0.95876 0.94261 0.80176 0.91564 0.92044 0.91513 0.90025 0.92098 0.90464 0.88803 0.89011 0.88005 0.88335 0.80986 0.80788 0.93876 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -28.83 13.06 55.49 0.72 -28.10 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 3 Si 0.90 24.08 29.55 -169.99 -5.02 19.06 16 4 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 7 C -0.20 -5.44 8.21 -15.06 -0.12 -5.56 16 8 H 0.09 2.62 5.28 -52.49 -0.28 2.34 16 9 N -0.70 -16.74 4.75 -47.12 -0.22 -16.96 16 10 C 0.19 3.49 0.68 -131.69 -0.09 3.40 16 11 C 0.08 1.30 6.08 37.16 0.23 1.53 16 12 O -0.54 -10.30 10.10 -35.23 -0.36 -10.65 16 13 C -0.12 -1.68 4.76 -26.69 -0.13 -1.80 16 14 C -0.13 -1.81 5.91 -26.62 -0.16 -1.97 16 15 C 0.11 1.44 6.34 -3.72 -0.02 1.42 16 16 N -0.59 -10.26 2.89 -172.77 -0.50 -10.76 16 17 C 0.52 9.81 7.70 -10.98 -0.08 9.73 16 18 O -0.53 -12.22 15.40 5.56 0.09 -12.14 16 19 C -0.13 -1.88 4.03 -27.88 -0.11 -1.99 16 20 C -0.03 -0.46 5.09 -27.88 -0.14 -0.60 16 21 C 0.06 0.82 6.64 -13.46 -0.09 0.73 16 22 N -0.48 -6.51 10.54 -11.86 -0.13 -6.64 16 23 C 0.04 0.41 11.35 -19.19 -0.22 0.19 16 24 C -0.27 -2.69 11.37 29.12 0.33 -2.36 16 25 S 0.13 1.57 23.18 -107.50 -2.49 -0.92 16 26 C 0.11 2.10 4.85 -3.71 -0.02 2.08 16 27 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.38 9.71 6.43 -40.82 -0.26 9.45 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.35 4.96 9.12 45.56 0.42 5.38 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.88 5.93 -51.93 -0.31 0.57 16 38 H 0.09 1.31 7.69 -51.93 -0.40 0.91 16 39 H 0.09 1.14 7.94 -51.93 -0.41 0.72 16 40 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 41 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 42 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 2.43 5.70 -51.93 -0.30 2.13 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -35.51 371.76 -8.70 -44.22 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.67 Total: 13.27 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.72 Total: 4.03 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.12 Total: -62.47 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.27 Total: -22.79 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.02 Total: 19.06 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.49 Total: -0.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.51 -8.70 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502600458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.001 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds