Wall clock time and date at job start Tue Mar 31 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49978 * 299.93716 * 10 9 7 12 12 O 1.42900 * 109.46718 * 59.99870 * 11 10 9 13 13 C 1.53043 * 109.49580 * 179.83731 * 10 9 7 14 14 C 1.53036 * 109.54027 * 301.41786 * 13 10 9 15 15 C 1.53187 * 109.31230 * 298.63421 * 14 13 10 16 16 N 1.46922 * 108.77857 * 54.63534 * 15 14 13 17 17 C 1.34775 * 120.63610 * 126.41416 * 16 15 14 18 18 O 1.21280 * 120.00482 * 179.97438 * 17 16 15 19 19 C 1.50706 * 119.99528 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.47038 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47345 * 180.02562 * 20 19 17 22 22 N 1.29028 * 124.91440 * 90.00046 * 21 20 19 23 23 C 1.31782 * 117.12331 * 179.97438 * 22 21 20 24 24 C 1.33634 * 114.50012 * 0.02562 * 23 22 21 25 25 S 1.70976 * 124.91699 * 269.69872 * 21 20 19 26 26 C 1.46931 * 118.73833 * 306.39404 * 16 15 14 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46778 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.46916 * 300.00381 * 11 10 9 31 31 H 0.96704 * 113.99357 * 180.02562 * 12 11 10 32 32 H 1.09005 * 109.45284 * 61.43647 * 13 10 9 33 33 H 1.08998 * 109.45954 * 181.39024 * 13 10 9 34 34 H 1.09002 * 109.49735 * 178.67894 * 14 13 10 35 35 H 1.09003 * 109.52693 * 58.59749 * 14 13 10 36 36 H 1.09002 * 109.58915 * 294.84962 * 15 14 13 37 37 H 1.09002 * 109.58989 * 174.42575 * 15 14 13 38 38 H 1.08993 * 109.47509 * 300.00479 * 19 17 16 39 39 H 1.08998 * 109.46966 * 60.00776 * 19 17 16 40 40 H 1.09000 * 109.47627 * 300.00921 * 20 19 17 41 41 H 1.09002 * 109.46786 * 60.00164 * 20 19 17 42 42 H 1.07999 * 122.74788 * 179.97438 * 23 22 21 43 43 H 1.08008 * 126.03765 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.58577 * 293.82227 * 26 16 15 45 45 H 1.09002 * 109.58928 * 173.39363 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9318 -3.7365 -1.2649 12 8 3.8606 -2.6505 -1.2677 13 6 1.0639 -4.8205 -0.0062 14 6 0.1677 -4.7224 1.2304 15 6 1.0319 -4.8190 2.4915 16 7 2.0823 -3.7939 2.4247 17 6 2.2528 -2.9185 3.4352 18 8 3.1237 -2.0771 3.3683 19 6 1.3611 -2.9851 4.6483 20 6 1.7631 -1.8894 5.6376 21 6 0.8719 -1.9564 6.8509 22 7 1.1145 -2.6557 7.9077 23 6 0.2279 -2.6008 8.8812 24 6 -0.8212 -1.8116 8.6313 25 16 -0.6034 -1.1109 7.0294 26 6 2.9436 -3.7414 1.2355 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 3.4762 -4.6808 -1.2688 30 1 2.3010 -3.6774 -2.1519 31 1 4.4481 -2.6376 -2.0357 32 1 0.4488 -4.7766 -0.9050 33 1 1.6094 -5.7639 0.0146 34 1 -0.5553 -5.5381 1.2214 35 1 -0.3599 -3.7686 1.2232 36 1 1.4888 -5.8071 2.5466 37 1 0.4127 -4.6509 3.3727 38 1 0.3242 -2.8392 4.3456 39 1 1.4670 -3.9601 5.1239 40 1 2.8000 -2.0357 5.9402 41 1 1.6576 -0.9142 5.1622 42 1 0.3395 -3.1493 9.8047 43 1 -1.6535 -1.6316 9.2958 44 1 3.5563 -4.6416 1.1881 45 1 3.5858 -2.8622 1.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502600458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:12 Heat of formation + Delta-G solvation = -46.697793 kcal Electronic energy + Delta-G solvation = -28471.066983 eV Core-core repulsion = 24614.885100 eV Total energy + Delta-G solvation = -3856.181883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29679 -40.58485 -39.28040 -37.12744 -35.54642 -34.92609 -33.86766 -32.49468 -30.87522 -30.26556 -27.88420 -26.53643 -25.95546 -25.49044 -23.96758 -22.89931 -20.90096 -20.57229 -19.63134 -19.17800 -18.98719 -17.88459 -17.78812 -17.10879 -16.73506 -16.39404 -16.29593 -15.83130 -15.63670 -15.42884 -15.23441 -14.92521 -14.70478 -14.52647 -14.20794 -13.95832 -13.78681 -13.48714 -13.43920 -13.19962 -13.05804 -12.89076 -12.68523 -12.50694 -12.37881 -12.18865 -12.06268 -11.88267 -11.72828 -11.37574 -11.26541 -10.89675 -10.67908 -10.59167 -10.54696 -10.38379 -9.84888 -9.45029 -8.76749 -7.78792 -4.99176 -0.28076 0.40127 0.83897 1.41417 1.43707 1.53284 1.78525 1.86131 2.25801 2.65910 3.12262 3.42232 3.66103 3.70713 3.89918 3.92583 4.00682 4.02685 4.15630 4.21182 4.29199 4.38276 4.41445 4.48247 4.56297 4.58244 4.63891 4.71527 4.77845 4.82392 4.86997 4.94704 4.97735 5.07013 5.08481 5.24191 5.25587 5.48792 5.55807 5.79150 5.94792 6.46985 6.64238 6.75570 7.17077 7.39989 7.55545 8.24639 8.47935 9.45529 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003922 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.069469 B = 7137.667289 C = 8419.625186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.086 4.086 3 Si 0.943 3.057 4 H -0.291 1.291 5 H -0.302 1.302 6 H -0.291 1.291 7 C -0.165 4.165 8 H 0.078 0.922 9 N -0.709 5.709 10 C 0.175 3.825 11 C 0.074 3.926 12 O -0.574 6.574 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.104 3.896 16 N -0.596 5.596 17 C 0.507 3.493 18 O -0.588 6.588 19 C -0.114 4.114 20 C -0.024 4.024 21 C 0.040 3.960 22 N -0.494 5.494 23 C 0.021 3.979 24 C -0.248 4.248 25 S 0.123 5.877 26 C 0.116 3.884 27 H 0.240 0.760 28 H 0.372 0.628 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.375 0.625 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.203 0.797 43 H 0.210 0.790 44 H 0.075 0.925 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -15.559 11.627 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.276 4.276 3 Si 0.776 3.224 4 H -0.219 1.219 5 H -0.230 1.230 6 H -0.218 1.218 7 C -0.298 4.298 8 H 0.096 0.904 9 N -0.348 5.348 10 C 0.084 3.916 11 C -0.006 4.006 12 O -0.380 6.380 13 C -0.147 4.147 14 C -0.167 4.167 15 C -0.017 4.017 16 N -0.327 5.327 17 C 0.296 3.704 18 O -0.468 6.468 19 C -0.155 4.155 20 C -0.066 4.066 21 C -0.237 4.237 22 N -0.210 5.210 23 C -0.129 4.129 24 C -0.386 4.386 25 S 0.376 5.624 26 C -0.008 4.008 27 H 0.049 0.951 28 H 0.205 0.795 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.222 0.778 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.219 0.781 43 H 0.227 0.773 44 H 0.093 0.907 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.594 -14.502 11.560 18.726 hybrid contribution 0.536 1.155 -0.070 1.276 sum -2.058 -13.347 11.490 17.731 Atomic orbital electron populations 1.69754 1.05602 1.24510 1.63203 1.25116 0.96016 0.99494 1.06942 0.85539 0.77542 0.82409 0.76867 1.21933 1.22964 1.21764 1.19600 0.91468 0.84514 1.34222 0.90382 1.42528 1.04829 1.00282 1.87209 1.20423 0.91914 0.87282 0.91996 1.22742 0.91055 0.88787 0.97987 1.86800 1.51329 1.50957 1.48878 1.21631 0.97188 0.97059 0.98855 1.21846 0.98192 1.02574 0.94081 1.22023 0.88932 0.91401 0.99393 1.47933 1.34634 1.32601 1.17538 1.20936 0.84394 0.79978 0.85062 1.90674 1.37354 1.37522 1.81276 1.21528 0.99938 1.01549 0.92520 1.19802 0.98013 0.99725 0.89015 1.26858 0.99212 0.99082 0.98588 1.66311 1.31766 1.21925 1.00984 1.22272 0.89989 1.00990 0.99612 1.27510 1.06397 1.04821 0.99910 1.84440 1.18999 1.44968 1.13962 1.21884 0.92883 1.00865 0.85217 0.95113 0.79530 0.91615 0.94677 0.77761 0.91554 0.88141 0.87501 0.94029 0.88374 0.88682 0.88106 0.86200 0.89279 0.90848 0.78056 0.77341 0.90711 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.44 13.06 21.65 0.28 -61.16 16 2 C -0.09 -5.22 5.50 84.86 0.47 -4.76 16 3 Si 0.94 51.53 29.55 68.60 2.03 53.55 16 4 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 5 H -0.30 -16.59 7.11 99.48 0.71 -15.89 16 6 H -0.29 -16.14 7.11 99.48 0.71 -15.43 16 7 C -0.17 -9.44 8.21 84.03 0.69 -8.75 16 8 H 0.08 4.67 5.28 -2.91 -0.02 4.65 16 9 N -0.71 -34.22 4.75 -302.98 -1.44 -35.66 16 10 C 0.18 6.26 0.68 3.68 0.00 6.26 16 11 C 0.07 2.42 6.08 71.98 0.44 2.86 16 12 O -0.57 -21.71 10.10 -148.98 -1.51 -23.22 16 13 C -0.11 -2.81 4.76 30.62 0.15 -2.66 16 14 C -0.13 -3.11 5.91 30.67 0.18 -2.93 16 15 C 0.10 2.36 6.34 86.36 0.55 2.91 16 16 N -0.60 -19.95 2.89 -818.90 -2.37 -22.32 16 17 C 0.51 19.44 7.70 87.66 0.67 20.11 16 18 O -0.59 -28.75 15.40 -3.03 -0.05 -28.79 16 19 C -0.11 -3.29 4.03 29.85 0.12 -3.17 16 20 C -0.02 -0.75 5.09 29.85 0.15 -0.60 16 21 C 0.04 1.06 6.64 88.52 0.59 1.65 16 22 N -0.49 -12.84 10.54 -191.45 -2.02 -14.86 16 23 C 0.02 0.41 11.35 83.66 0.95 1.36 16 24 C -0.25 -4.17 11.37 66.77 0.76 -3.41 16 25 S 0.12 2.81 23.18 -56.49 -1.31 1.50 16 26 C 0.12 4.28 4.85 86.36 0.42 4.70 16 27 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.37 19.30 6.43 -92.71 -0.60 18.71 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.37 10.26 9.12 -74.05 -0.68 9.58 16 32 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.36 6.75 -2.39 -0.02 1.34 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.83 5.93 -2.39 -0.01 1.82 16 38 H 0.10 2.76 7.69 -2.39 -0.02 2.75 16 39 H 0.12 2.75 7.94 -2.39 -0.02 2.73 16 40 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 41 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 42 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 2.47 5.70 -2.39 -0.01 2.46 16 Total: -1.00 -83.02 371.76 -0.48 -83.50 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.24 Total: 33.88 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.13 Total: 13.57 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -5.54 Total: -133.99 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -1.55 Total: -52.01 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.03 Total: 53.55 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal Total: -83.02 -0.48 -83.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502600458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.800 kcal (2) G-P(sol) polarization free energy of solvation -83.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds