Wall clock time and date at job start Tue Mar 31 2020 23:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39834 * 126.45805 * 2 1 4 4 C 1.35459 * 107.86430 * 180.30770 * 3 2 1 5 5 N 1.35536 * 108.87027 * 359.74311 * 4 3 2 6 6 H 0.97002 * 125.67641 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64503 * 359.97438 * 5 4 3 8 8 C 1.46682 * 126.23454 * 179.97438 * 7 5 4 9 9 O 1.21693 * 120.00117 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99810 * 359.75606 * 8 7 5 11 11 C 1.46499 * 120.00195 * 180.27605 * 10 8 7 12 12 H 1.08999 * 109.46621 * 324.99673 * 11 10 8 13 13 C 1.52998 * 109.47145 * 84.99285 * 11 10 8 14 14 C 1.52995 * 109.47290 * 204.99666 * 11 10 8 15 15 N 1.46510 * 109.47018 * 54.99553 * 14 11 10 16 16 C 1.46492 * 120.00126 * 270.00016 * 15 14 11 17 17 C 1.34773 * 119.99520 * 90.00129 * 15 14 11 18 18 O 1.21279 * 120.00448 * 0.02562 * 17 15 14 19 19 C 1.50703 * 119.99634 * 179.97438 * 17 15 14 20 20 S 1.81002 * 109.47144 * 180.02562 * 19 17 15 21 21 C 1.76194 * 100.00205 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00205 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00273 * 359.97438 * 23 21 20 25 25 Si 1.86811 * 120.00121 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47135 * 59.99851 * 25 23 21 27 27 H 1.48498 * 109.47019 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46713 * 300.00167 * 25 23 21 29 29 H 1.08997 * 109.46436 * 270.13032 * 1 2 3 30 30 H 1.08994 * 109.47005 * 30.12991 * 1 2 3 31 31 H 1.08997 * 109.47094 * 150.13641 * 1 2 3 32 32 H 1.08000 * 126.06832 * 0.04932 * 3 2 1 33 33 H 1.07997 * 125.56250 * 179.71745 * 4 3 2 34 34 H 0.97000 * 119.99736 * 0.26877 * 10 8 7 35 35 H 1.08999 * 109.47045 * 60.00647 * 13 11 10 36 36 H 1.09007 * 109.46732 * 180.02562 * 13 11 10 37 37 H 1.08995 * 109.47315 * 300.00483 * 13 11 10 38 38 H 1.09000 * 109.47530 * 174.99381 * 14 11 10 39 39 H 1.08999 * 109.47204 * 295.00095 * 14 11 10 40 40 H 1.09003 * 109.47423 * 89.99947 * 16 15 14 41 41 H 1.08997 * 109.47645 * 210.00144 * 16 15 14 42 42 H 1.09000 * 109.47134 * 329.99965 * 16 15 14 43 43 H 1.08995 * 109.47346 * 299.99938 * 19 17 15 44 44 H 1.09001 * 109.47278 * 60.00185 * 19 17 15 45 45 H 0.97001 * 120.00590 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0069 5 7 3.6284 -0.6626 -0.0055 6 1 4.4191 -1.2245 -0.0091 7 6 2.3263 -1.1090 0.0030 8 6 1.8898 -2.5093 0.0067 9 8 0.7026 -2.7766 0.0139 10 7 2.8036 -3.5000 -0.0035 11 6 2.3677 -4.8986 -0.0059 12 1 1.4600 -4.9973 0.5895 13 6 2.0859 -5.3425 -1.4427 14 6 3.4682 -5.7769 0.5926 15 7 3.8217 -5.2774 1.9239 16 6 4.8797 -4.2753 2.0731 17 6 3.1734 -5.7400 3.0111 18 8 2.2978 -6.5700 2.8876 19 6 3.5373 -5.2267 4.3805 20 16 2.4978 -6.0336 5.6232 21 6 3.1184 -5.2691 7.0844 22 1 3.9124 -4.5401 7.0169 23 6 2.5868 -5.6037 8.3221 24 7 1.6188 -6.4917 8.4044 25 14 3.2443 -4.7925 9.8712 26 1 3.0484 -3.3233 9.7819 27 1 2.5153 -5.3188 11.0530 28 1 4.6923 -5.0913 10.0099 29 1 -0.3632 0.0023 1.0277 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3633 -0.8912 -0.5117 32 1 2.0137 2.1548 0.0008 33 1 4.4973 1.3252 -0.0130 34 1 3.7499 -3.2869 -0.0092 35 1 2.9936 -5.2438 -2.0381 36 1 1.7611 -6.3830 -1.4444 37 1 1.3019 -4.7168 -1.8692 38 1 3.1105 -6.8034 0.6730 39 1 4.3470 -5.7476 -0.0515 40 1 4.4457 -3.2771 2.0137 41 1 5.3672 -4.4026 3.0396 42 1 5.6135 -4.4003 1.2768 43 1 4.5849 -5.4476 4.5847 44 1 3.3792 -4.1489 4.4184 45 1 1.2475 -6.7259 9.2694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510455565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:05 Heat of formation + Delta-G solvation = -56.577905 kcal Electronic energy + Delta-G solvation = -27232.701187 eV Core-core repulsion = 23376.090871 eV Total energy + Delta-G solvation = -3856.610317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31732 -41.12248 -40.07457 -37.59200 -35.69151 -34.60956 -33.63600 -32.75035 -31.05554 -30.24901 -28.28038 -27.86336 -27.72089 -26.48786 -24.05054 -22.36071 -21.51686 -20.90931 -20.19756 -19.62059 -19.53937 -18.14820 -17.42820 -17.12639 -16.96692 -16.89824 -16.33981 -16.26266 -15.85010 -15.17979 -14.88244 -14.80676 -14.60791 -14.51870 -14.50710 -14.00373 -13.84812 -13.68961 -13.63446 -13.53775 -13.30667 -13.19425 -13.17821 -12.99105 -12.88294 -12.87466 -12.61614 -12.55593 -12.14747 -11.76087 -11.15008 -11.07121 -10.96155 -10.37307 -10.30345 -9.71415 -9.68973 -9.10933 -8.70785 -8.36512 -6.15847 0.45567 1.22794 1.42292 1.43453 1.52303 1.54342 1.83882 1.95625 2.12652 2.25392 2.27269 2.33709 2.97492 3.23358 3.64487 3.69484 3.92316 4.03156 4.13450 4.20111 4.24629 4.27318 4.31176 4.39344 4.41058 4.50613 4.57906 4.65462 4.73875 4.83823 4.84805 4.86350 4.95507 5.02313 5.14216 5.19239 5.36392 5.38179 5.45444 5.53182 5.76620 5.96204 6.16375 6.19230 6.45125 6.64845 7.04077 7.10292 7.15549 8.72652 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.003019 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.091529 B = 9271.678049 C =10579.063341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.099 4.099 3 C -0.234 4.234 4 C 0.055 3.945 5 N -0.525 5.525 6 H 0.431 0.569 7 C -0.088 4.088 8 C 0.582 3.418 9 O -0.574 6.574 10 N -0.705 5.705 11 C 0.130 3.870 12 H 0.042 0.958 13 C -0.150 4.150 14 C 0.112 3.888 15 N -0.607 5.607 16 C 0.064 3.936 17 C 0.528 3.472 18 O -0.563 6.563 19 C -0.122 4.122 20 S -0.157 6.157 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.259 1.259 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.157 0.843 33 H 0.217 0.783 34 H 0.408 0.592 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.120 14.789 -23.302 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.258 4.258 4 C -0.082 4.082 5 N -0.122 5.122 6 H 0.272 0.728 7 C -0.200 4.200 8 C 0.372 3.628 9 O -0.454 6.454 10 N -0.358 5.358 11 C 0.024 3.976 12 H 0.060 0.940 13 C -0.209 4.209 14 C -0.011 4.011 15 N -0.341 5.341 16 C -0.078 4.078 17 C 0.316 3.684 18 O -0.441 6.441 19 C -0.273 4.273 20 S 0.071 5.929 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.183 1.183 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.234 0.766 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.024 13.095 -23.392 29.381 hybrid contribution 1.178 0.874 1.377 2.012 sum 13.202 13.969 -22.015 29.225 Atomic orbital electron populations 1.20289 0.90398 1.02491 1.01561 1.20268 0.95993 0.92427 1.02131 1.21106 0.92548 0.98916 1.13194 1.22700 1.00196 0.82709 1.02612 1.41853 1.06149 1.07821 1.56392 0.72835 1.19957 0.85575 0.92362 1.22117 1.17409 0.85590 0.84208 0.75633 1.90814 1.18295 1.83991 1.52262 1.45700 1.09476 1.05307 1.75306 1.21311 0.97940 0.80529 0.97852 0.93952 1.22025 1.02923 1.01887 0.94045 1.21975 0.99039 0.97830 0.82222 1.47755 1.37840 1.43169 1.05332 1.22244 0.89662 0.90388 1.05517 1.20169 0.81037 0.80868 0.86351 1.90690 1.32468 1.34266 1.86675 1.23350 1.04897 1.04100 0.94943 1.85636 1.50601 1.57222 0.99476 1.23148 1.24615 1.28996 0.92708 0.89902 1.26160 0.94769 0.95489 1.02740 1.70183 1.25864 1.32111 1.26668 0.84995 0.78756 0.78532 0.75659 1.18750 1.20366 1.18288 0.92639 0.90096 0.92616 0.82539 0.76602 0.75494 0.89117 0.90691 0.93843 0.89808 0.84669 0.92343 0.90537 0.86154 0.86974 0.88439 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 9.83 71.24 0.70 -1.54 16 2 C -0.10 -2.30 6.21 -19.56 -0.12 -2.42 16 3 C -0.23 -3.75 10.76 22.01 0.24 -3.51 16 4 C 0.05 0.53 11.89 83.48 0.99 1.52 16 5 N -0.52 -5.80 5.99 -183.61 -1.10 -6.90 16 6 H 0.43 1.36 8.19 -92.71 -0.76 0.60 16 7 C -0.09 -1.90 7.06 40.35 0.28 -1.62 16 8 C 0.58 15.55 7.75 86.45 0.67 16.22 16 9 O -0.57 -21.15 14.47 -4.33 -0.06 -21.21 16 10 N -0.71 -13.18 4.35 -446.51 -1.94 -15.12 16 11 C 0.13 2.90 2.88 44.99 0.13 3.03 16 12 H 0.04 1.46 7.58 -2.39 -0.02 1.45 16 13 C -0.15 -2.64 9.48 71.98 0.68 -1.96 16 14 C 0.11 2.10 5.07 86.38 0.44 2.54 16 15 N -0.61 -14.31 2.73 -846.77 -2.31 -16.62 16 16 C 0.06 0.82 9.02 127.77 1.15 1.97 16 17 C 0.53 19.87 7.69 87.66 0.67 20.55 16 18 O -0.56 -26.78 15.44 -3.03 -0.05 -26.82 16 19 C -0.12 -4.95 4.71 71.24 0.34 -4.61 16 20 S -0.16 -8.94 20.57 -56.49 -1.16 -10.11 16 21 C -0.55 -31.72 9.50 67.95 0.65 -31.07 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -57.05 13.22 21.65 0.29 -56.77 16 25 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.64 6.49 -2.39 -0.02 1.62 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.22 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.41 4.01 6.20 -92.71 -0.57 3.44 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.97 7.42 -2.39 -0.02 1.96 16 39 H 0.14 1.08 7.89 -2.39 -0.02 1.07 16 40 H 0.06 0.68 7.39 -2.39 -0.02 0.67 16 41 H 0.08 1.11 6.44 -2.39 -0.02 1.10 16 42 H 0.12 0.38 7.89 -2.39 -0.02 0.36 16 43 H 0.11 3.99 7.40 -2.40 -0.02 3.97 16 44 H 0.10 3.73 8.11 -2.39 -0.02 3.71 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -93.98 388.93 2.67 -91.31 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.31 Total: 15.96 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 7.29 Total: 0.32 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -5.07 Total: -95.40 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.11 Total: -48.04 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.11 kcal Total: -93.98 2.67 -91.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510455565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.736 kcal (2) G-P(sol) polarization free energy of solvation -93.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds