Wall clock time and date at job start Tue Mar 31 2020 23:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34488 * 125.56798 * 2 1 4 4 C 1.46691 * 106.32830 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93826 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99849 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00147 * 0.04644 * 5 4 3 8 8 C 1.46503 * 119.99780 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46905 * 180.02562 * 8 7 5 10 10 N 1.46493 * 109.46979 * 179.97438 * 9 8 7 11 11 C 1.46508 * 120.00092 * 269.99760 * 10 9 8 12 12 C 1.34772 * 120.00451 * 89.99805 * 10 9 8 13 13 O 1.21283 * 119.99847 * 359.97438 * 12 10 9 14 14 C 1.50698 * 120.00556 * 179.97438 * 12 10 9 15 15 S 1.80998 * 109.47410 * 180.02562 * 14 12 10 16 16 C 1.76197 * 100.00175 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00129 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00039 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 359.97438 * 18 16 15 21 21 H 1.48490 * 109.47235 * 90.00368 * 20 18 16 22 22 H 1.48503 * 109.47122 * 210.00660 * 20 18 16 23 23 H 1.48501 * 109.46967 * 330.00030 * 20 18 16 24 24 C 1.36763 * 106.11757 * 359.97438 * 4 3 2 25 25 C 1.50703 * 125.80106 * 180.02562 * 24 4 3 26 26 N 1.34658 * 108.39785 * 0.26724 * 24 4 3 27 27 H 0.96996 * 124.85358 * 179.74542 * 26 24 4 28 28 H 1.08997 * 109.47023 * 90.02271 * 1 2 3 29 29 H 1.08999 * 109.47152 * 210.02553 * 1 2 3 30 30 H 1.09004 * 109.47256 * 330.02758 * 1 2 3 31 31 H 1.08000 * 126.83799 * 359.95419 * 3 2 1 32 32 H 0.96994 * 119.99987 * 359.97438 * 7 5 4 33 33 H 1.09007 * 109.47064 * 299.99341 * 8 7 5 34 34 H 1.08993 * 109.47180 * 59.99678 * 8 7 5 35 35 H 1.08998 * 109.46731 * 299.99714 * 9 8 7 36 36 H 1.09004 * 109.47045 * 59.99763 * 9 8 7 37 37 H 1.08999 * 109.47123 * 89.99976 * 11 10 9 38 38 H 1.08995 * 109.47012 * 210.00316 * 11 10 9 39 39 H 1.08997 * 109.46818 * 330.00023 * 11 10 9 40 40 H 1.09006 * 109.47395 * 300.00138 * 14 12 10 41 41 H 1.09004 * 109.47383 * 59.99715 * 14 12 10 42 42 H 0.97004 * 119.99844 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47152 * 89.99942 * 25 24 4 44 44 H 1.09001 * 109.46980 * 330.00042 * 25 24 4 45 45 H 1.09004 * 109.47113 * 210.00023 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 0.0006 5 6 4.8977 1.4303 0.0003 6 8 5.9892 0.8937 0.0005 7 7 4.8079 2.7751 0.0003 8 6 6.0250 3.5904 0.0006 9 6 5.6459 5.0728 0.0012 10 7 6.8629 5.8881 0.0021 11 6 7.4710 6.2952 1.2713 12 6 7.4233 6.2638 -1.1646 13 8 6.9203 5.9264 -2.2153 14 6 8.6750 7.1030 -1.1637 15 16 9.1766 7.4401 -2.8698 16 6 10.6205 8.4071 -2.5788 17 1 10.9348 8.6175 -1.5671 18 6 11.3535 8.8995 -3.6497 19 7 12.4325 9.6215 -3.4322 20 14 10.8097 8.5363 -5.3995 21 1 9.8860 9.6029 -5.8622 22 1 11.9986 8.4912 -6.2881 23 1 10.1122 7.2259 -5.4391 24 6 3.5998 -0.7550 0.0015 25 6 4.7722 -1.7019 0.0030 26 7 2.3008 -1.1098 -0.0045 27 1 1.9758 -2.0237 -0.0087 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.9628 2.1234 -0.0007 32 1 3.9374 3.2030 0.0002 33 1 6.6127 3.3658 0.8908 34 1 6.6131 3.3658 -0.8892 35 1 5.0580 5.2977 -0.8887 36 1 5.0580 5.2970 0.8913 37 1 8.1938 5.5424 1.5859 38 1 7.9763 7.2522 1.1416 39 1 6.6953 6.3939 2.0307 40 1 8.4809 8.0444 -0.6497 41 1 9.4722 6.5660 -0.6495 42 1 12.9445 9.9659 -4.1807 43 1 5.0542 -1.9294 1.0310 44 1 5.6144 -1.2381 -0.5106 45 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528145967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:19 Heat of formation + Delta-G solvation = -34.878721 kcal Electronic energy + Delta-G solvation = -25790.126931 eV Core-core repulsion = 21934.457562 eV Total energy + Delta-G solvation = -3855.669369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67320 -39.75497 -39.02933 -35.95853 -34.54968 -32.98278 -32.41648 -31.71797 -30.46875 -29.52676 -28.33936 -26.54350 -25.60846 -25.17828 -23.45617 -21.97142 -20.72068 -20.04575 -19.08586 -17.67796 -17.36098 -16.76056 -16.44962 -16.18320 -15.66075 -15.39867 -15.20253 -14.97881 -14.88681 -14.22175 -13.87987 -13.78598 -13.65823 -13.54695 -13.43633 -13.22702 -13.05027 -12.89264 -12.76782 -12.65525 -12.46555 -12.41813 -12.29941 -11.91535 -11.80267 -11.42567 -11.22836 -10.98668 -10.57878 -9.97990 -9.83471 -9.50343 -9.27800 -9.03940 -8.98245 -8.69970 -8.46861 -8.35008 -6.89751 -6.26833 -3.98468 1.50165 2.00810 2.55687 2.75058 2.90880 3.08527 3.34913 3.42573 3.46420 3.53357 3.66321 4.35277 4.36924 4.52367 4.58531 4.70564 4.73737 4.84897 4.91396 4.94974 5.05496 5.06850 5.12293 5.20901 5.22633 5.32131 5.33205 5.38468 5.41266 5.46655 5.65937 5.68348 5.79686 5.80249 5.87918 5.96883 6.02786 6.29445 6.43327 6.54914 6.60565 7.06340 7.38256 7.48070 7.96157 8.25375 8.40853 8.43548 9.19465 10.82300 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.908592 B =14834.401115 C =15112.312360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.010 3.990 3 C -0.165 4.165 4 C -0.233 4.233 5 C 0.591 3.409 6 O -0.548 6.548 7 N -0.723 5.723 8 C 0.106 3.894 9 C 0.109 3.891 10 N -0.620 5.620 11 C 0.078 3.922 12 C 0.532 3.468 13 O -0.514 6.514 14 C -0.121 4.121 15 S -0.143 6.143 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.108 3.892 25 C -0.096 4.096 26 N -0.550 5.550 27 H 0.414 0.586 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.270 0.730 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.893 -19.966 13.238 34.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.189 4.189 4 C -0.243 4.243 5 C 0.380 3.620 6 O -0.427 6.427 7 N -0.375 5.375 8 C -0.019 4.019 9 C -0.015 4.015 10 N -0.357 5.357 11 C -0.065 4.065 12 C 0.320 3.680 13 O -0.388 6.388 14 C -0.271 4.271 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.010 4.010 25 C -0.153 4.153 26 N -0.147 5.147 27 H 0.251 0.749 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.233 0.767 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.743 -20.811 11.606 34.351 hybrid contribution 0.016 0.297 0.582 0.654 sum -24.727 -20.514 12.188 34.363 Atomic orbital electron populations 1.20336 0.87682 1.03368 1.02844 1.20221 0.93506 0.85991 1.10180 1.21789 0.90799 0.97770 1.08571 1.20082 0.92857 0.92264 1.19070 1.17311 0.87782 0.81447 0.75426 1.90756 1.28701 1.72324 1.50956 1.45575 1.09576 1.05987 1.76365 1.21714 0.87238 0.89849 1.03123 1.21477 0.87374 0.88981 1.03669 1.47696 1.27821 1.53393 1.06744 1.21859 0.98684 1.01135 0.84842 1.20371 0.85149 0.79626 0.82902 1.90705 1.62691 1.54771 1.30586 1.23314 0.97068 1.01781 1.04959 1.84804 1.34457 1.69357 1.03082 1.22308 1.10199 1.36656 0.97644 0.89372 1.24709 0.93816 0.93480 0.99293 1.69942 1.15787 1.33548 1.32408 0.86737 0.79294 0.81715 0.84134 1.19228 1.19955 1.15895 1.20326 0.84849 0.94298 1.01482 1.20601 0.94742 0.96478 1.03528 1.41541 1.05343 1.08815 1.58994 0.74945 0.90899 0.91782 0.89917 0.83755 0.76684 0.91373 0.90741 0.89208 0.90160 0.92402 0.90304 0.91141 0.88436 0.88360 0.91963 0.90381 0.87832 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.01 0.37 0.07 16 2 C 0.01 0.07 7.13 -81.87 -0.58 -0.52 16 3 C -0.17 -1.37 10.45 -37.50 -0.39 -1.76 16 4 C -0.23 -2.53 6.29 -103.35 -0.65 -3.18 16 5 C 0.59 7.75 7.81 -12.59 -0.10 7.65 16 6 O -0.55 -8.97 14.81 5.25 0.08 -8.89 16 7 N -0.72 -7.85 5.55 -61.43 -0.34 -8.20 16 8 C 0.11 1.29 6.00 -4.04 -0.02 1.27 16 9 C 0.11 1.19 5.56 -4.04 -0.02 1.17 16 10 N -0.62 -8.17 2.87 -181.57 -0.52 -8.69 16 11 C 0.08 0.75 10.29 59.85 0.62 1.37 16 12 C 0.53 9.62 7.69 -10.99 -0.08 9.53 16 13 O -0.51 -11.14 15.44 5.55 0.09 -11.05 16 14 C -0.12 -2.36 4.71 36.00 0.17 -2.19 16 15 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 16 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 17 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 20 Si 0.86 22.01 27.74 -169.99 -4.71 17.30 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.23 -6.06 6.74 56.52 0.38 -5.68 16 24 C 0.11 1.00 7.17 -81.88 -0.59 0.42 16 25 C -0.10 -0.78 9.88 36.01 0.36 -0.43 16 26 N -0.55 -3.59 5.90 -5.42 -0.03 -3.62 16 27 H 0.41 1.39 8.96 -40.82 -0.37 1.02 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.14 0.89 7.70 -52.49 -0.40 0.48 16 32 H 0.40 3.17 7.60 -40.82 -0.31 2.86 16 33 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 36 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 39 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 40 H 0.10 1.75 7.40 -51.91 -0.38 1.37 16 41 H 0.10 1.81 8.11 -51.91 -0.42 1.39 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.11 6.46 -51.93 -0.34 0.77 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -38.18 392.07 -8.19 -46.36 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.72 Total: 1.12 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.71 Total: 1.34 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.12 Total: -46.41 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.16 Total: -19.95 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.18 -8.19 -46.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528145967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.484 kcal (2) G-P(sol) polarization free energy of solvation -38.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds