Wall clock time and date at job start Tue Mar 31 2020 23:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34488 * 125.56798 * 2 1 4 4 C 1.46691 * 106.32830 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93826 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99849 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00147 * 0.04644 * 5 4 3 8 8 C 1.46503 * 119.99780 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46905 * 180.02562 * 8 7 5 10 10 N 1.46493 * 109.46979 * 179.97438 * 9 8 7 11 11 C 1.46508 * 120.00092 * 269.99760 * 10 9 8 12 12 C 1.34772 * 120.00451 * 89.99805 * 10 9 8 13 13 O 1.21283 * 119.99847 * 359.97438 * 12 10 9 14 14 C 1.50698 * 120.00556 * 179.97438 * 12 10 9 15 15 S 1.80998 * 109.47410 * 180.02562 * 14 12 10 16 16 C 1.76197 * 100.00175 * 180.02562 * 15 14 12 17 17 H 1.08007 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00129 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00039 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 359.97438 * 18 16 15 21 21 H 1.48490 * 109.47235 * 90.00368 * 20 18 16 22 22 H 1.48503 * 109.47122 * 210.00660 * 20 18 16 23 23 H 1.48501 * 109.46967 * 330.00030 * 20 18 16 24 24 C 1.36763 * 106.11757 * 359.97438 * 4 3 2 25 25 C 1.50703 * 125.80106 * 180.02562 * 24 4 3 26 26 N 1.34658 * 108.39785 * 0.26724 * 24 4 3 27 27 H 0.96996 * 124.85358 * 179.74542 * 26 24 4 28 28 H 1.08997 * 109.47023 * 90.02271 * 1 2 3 29 29 H 1.08999 * 109.47152 * 210.02553 * 1 2 3 30 30 H 1.09004 * 109.47256 * 330.02758 * 1 2 3 31 31 H 1.08000 * 126.83799 * 359.95419 * 3 2 1 32 32 H 0.96994 * 119.99987 * 359.97438 * 7 5 4 33 33 H 1.09007 * 109.47064 * 299.99341 * 8 7 5 34 34 H 1.08993 * 109.47180 * 59.99678 * 8 7 5 35 35 H 1.08998 * 109.46731 * 299.99714 * 9 8 7 36 36 H 1.09004 * 109.47045 * 59.99763 * 9 8 7 37 37 H 1.08999 * 109.47123 * 89.99976 * 11 10 9 38 38 H 1.08995 * 109.47012 * 210.00316 * 11 10 9 39 39 H 1.08997 * 109.46818 * 330.00023 * 11 10 9 40 40 H 1.09006 * 109.47395 * 300.00138 * 14 12 10 41 41 H 1.09004 * 109.47383 * 59.99715 * 14 12 10 42 42 H 0.97004 * 119.99844 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47152 * 89.99942 * 25 24 4 44 44 H 1.09001 * 109.46980 * 330.00042 * 25 24 4 45 45 H 1.09004 * 109.47113 * 210.00023 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 0.0006 5 6 4.8977 1.4303 0.0003 6 8 5.9892 0.8937 0.0005 7 7 4.8079 2.7751 0.0003 8 6 6.0250 3.5904 0.0006 9 6 5.6459 5.0728 0.0012 10 7 6.8629 5.8881 0.0021 11 6 7.4710 6.2952 1.2713 12 6 7.4233 6.2638 -1.1646 13 8 6.9203 5.9264 -2.2153 14 6 8.6750 7.1030 -1.1637 15 16 9.1766 7.4401 -2.8698 16 6 10.6205 8.4071 -2.5788 17 1 10.9348 8.6175 -1.5671 18 6 11.3535 8.8995 -3.6497 19 7 12.4325 9.6215 -3.4322 20 14 10.8097 8.5363 -5.3995 21 1 9.8860 9.6029 -5.8622 22 1 11.9986 8.4912 -6.2881 23 1 10.1122 7.2259 -5.4391 24 6 3.5998 -0.7550 0.0015 25 6 4.7722 -1.7019 0.0030 26 7 2.3008 -1.1098 -0.0045 27 1 1.9758 -2.0237 -0.0087 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.9628 2.1234 -0.0007 32 1 3.9374 3.2030 0.0002 33 1 6.6127 3.3658 0.8908 34 1 6.6131 3.3658 -0.8892 35 1 5.0580 5.2977 -0.8887 36 1 5.0580 5.2970 0.8913 37 1 8.1938 5.5424 1.5859 38 1 7.9763 7.2522 1.1416 39 1 6.6953 6.3939 2.0307 40 1 8.4809 8.0444 -0.6497 41 1 9.4722 6.5660 -0.6495 42 1 12.9445 9.9659 -4.1807 43 1 5.0542 -1.9294 1.0310 44 1 5.6144 -1.2381 -0.5106 45 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528145967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:18 Heat of formation + Delta-G solvation = -62.910595 kcal Electronic energy + Delta-G solvation = -25791.342484 eV Core-core repulsion = 21934.457562 eV Total energy + Delta-G solvation = -3856.884923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29400 -41.00689 -40.07390 -37.15354 -35.62389 -34.67147 -33.52042 -32.55092 -31.57626 -30.06047 -29.48914 -27.86226 -27.47891 -25.87990 -24.38930 -22.83957 -21.28180 -21.11398 -20.33863 -19.54400 -18.20992 -17.97911 -17.45121 -17.22030 -17.03646 -16.57396 -16.47361 -16.37983 -15.76796 -15.62605 -14.95268 -14.87563 -14.67841 -14.58677 -14.32342 -14.21693 -14.09612 -14.00828 -13.62601 -13.47437 -13.37185 -13.22524 -13.07075 -13.03307 -12.98493 -12.92019 -12.70249 -12.41076 -12.30234 -11.87306 -11.17192 -11.07877 -10.90826 -10.52666 -10.21485 -9.82393 -9.75364 -9.00599 -8.96197 -8.51672 -6.22548 0.71436 0.96735 1.30526 1.42860 1.44144 1.48569 1.53346 1.87556 2.20411 2.24959 2.53378 2.58696 2.70767 2.86480 3.56921 3.81769 3.85125 3.97390 4.01207 4.15846 4.21019 4.24212 4.28519 4.41117 4.46654 4.50852 4.64962 4.68844 4.69672 4.75219 4.84121 4.87091 4.90724 4.97569 5.07004 5.17835 5.28016 5.38673 5.54306 5.70758 5.81683 5.98994 6.11189 6.17631 6.56323 6.67459 6.93612 7.04800 7.32428 8.60561 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.908592 B =14834.401115 C =15112.312360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.017 3.983 3 C -0.181 4.181 4 C -0.266 4.266 5 C 0.583 3.417 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.116 3.884 9 C 0.114 3.886 10 N -0.607 5.607 11 C 0.068 3.932 12 C 0.531 3.469 13 O -0.559 6.559 14 C -0.106 4.106 15 S -0.180 6.180 16 C -0.527 4.527 17 H 0.064 0.936 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.260 1.260 22 H -0.259 1.259 23 H -0.240 1.240 24 C 0.099 3.901 25 C -0.093 4.093 26 N -0.537 5.537 27 H 0.430 0.570 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.032 -20.860 14.524 37.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.204 4.204 4 C -0.276 4.276 5 C 0.374 3.626 6 O -0.475 6.475 7 N -0.363 5.363 8 C -0.010 4.010 9 C -0.009 4.009 10 N -0.341 5.341 11 C -0.074 4.074 12 C 0.318 3.682 13 O -0.437 6.437 14 C -0.257 4.257 15 S 0.046 5.954 16 C -0.675 4.675 17 H 0.082 0.918 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.185 1.185 22 H -0.183 1.183 23 H -0.164 1.164 24 C -0.020 4.020 25 C -0.150 4.150 26 N -0.135 5.135 27 H 0.270 0.730 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.932 -21.701 12.949 37.667 hybrid contribution 0.909 0.499 0.369 1.101 sum -27.023 -21.202 13.318 36.839 Atomic orbital electron populations 1.20447 0.85057 1.04745 1.03738 1.20766 0.94996 0.85436 1.08039 1.22054 0.89629 0.99320 1.09406 1.20137 0.93082 0.93031 1.21386 1.17795 0.88096 0.82070 0.74673 1.90725 1.30449 1.73173 1.53174 1.45428 1.09916 1.05419 1.75549 1.21495 0.87478 0.90976 1.01058 1.21635 0.86459 0.87372 1.05475 1.47688 1.27853 1.52091 1.06421 1.22194 1.00207 1.01229 0.83752 1.20102 0.84660 0.79560 0.83853 1.90690 1.63796 1.56689 1.32491 1.23290 0.98432 1.03425 1.00519 1.84746 1.32983 1.68778 1.08869 1.22440 1.11453 1.36923 0.96673 0.91814 1.25541 0.93921 0.93381 1.03065 1.70015 1.16846 1.34599 1.33869 0.85883 0.79401 0.81353 0.79838 1.18505 1.18335 1.16383 1.20461 0.86131 0.94127 1.01306 1.20534 0.93572 0.97152 1.03755 1.41551 1.04336 1.09876 1.57721 0.73038 0.90124 0.90150 0.88853 0.82005 0.74820 0.91233 0.95096 0.90303 0.85302 0.91601 0.90362 0.87248 0.86530 0.87230 0.91369 0.89915 0.90904 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.41 71.24 0.74 0.43 16 2 C 0.02 0.19 7.13 40.98 0.29 0.48 16 3 C -0.18 -2.70 10.45 23.62 0.25 -2.46 16 4 C -0.27 -5.72 6.29 -19.04 -0.12 -5.84 16 5 C 0.58 15.69 7.81 86.62 0.68 16.36 16 6 O -0.59 -20.53 14.81 -4.13 -0.06 -20.59 16 7 N -0.71 -15.20 5.55 -466.50 -2.59 -17.79 16 8 C 0.12 2.80 6.00 86.38 0.52 3.32 16 9 C 0.11 2.25 5.56 86.38 0.48 2.73 16 10 N -0.61 -14.81 2.87 -846.76 -2.43 -17.24 16 11 C 0.07 1.09 10.29 127.77 1.31 2.41 16 12 C 0.53 18.92 7.69 87.66 0.67 19.59 16 13 O -0.56 -24.52 15.44 -3.04 -0.05 -24.57 16 14 C -0.11 -4.10 4.71 71.24 0.34 -3.76 16 15 S -0.18 -9.34 18.55 -56.49 -1.05 -10.38 16 16 C -0.53 -31.10 10.04 67.95 0.68 -30.41 16 17 H 0.06 3.94 8.03 -2.91 -0.02 3.92 16 18 C 0.05 2.76 5.50 84.86 0.47 3.23 16 19 N -0.92 -56.19 13.97 21.65 0.30 -55.88 16 20 Si 0.91 45.81 27.74 68.60 1.90 47.72 16 21 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.24 -12.14 6.74 99.48 0.67 -11.47 16 24 C 0.10 1.78 7.17 41.78 0.30 2.08 16 25 C -0.09 -1.51 9.88 71.24 0.70 -0.81 16 26 N -0.54 -5.91 5.90 -171.07 -1.01 -6.92 16 27 H 0.43 1.77 8.96 -92.71 -0.83 0.94 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.16 1.63 7.70 -2.91 -0.02 1.61 16 32 H 0.41 6.02 7.60 -92.71 -0.70 5.31 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.81 7.42 -2.39 -0.02 1.79 16 36 H 0.13 1.38 7.89 -2.38 -0.02 1.36 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.32 6.44 -2.39 -0.02 1.30 16 39 H 0.11 0.99 7.89 -2.39 -0.02 0.97 16 40 H 0.12 4.06 7.40 -2.39 -0.02 4.04 16 41 H 0.11 3.98 8.11 -2.39 -0.02 3.97 16 42 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.68 6.46 -2.39 -0.02 1.67 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -86.99 392.07 1.78 -85.20 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.55 Total: 13.12 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 7.31 Total: 7.33 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -5.73 Total: -97.84 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.11 Total: -45.16 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.72 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.38 kcal Total: -86.99 1.78 -85.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528145967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.294 kcal (2) G-P(sol) polarization free energy of solvation -86.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds