Wall clock time and date at job start Tue Mar 31 2020 23:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 124.52023 * 2 1 4 4 C 1.37476 * 115.10156 * 180.02562 * 3 2 1 5 5 C 1.36655 * 113.29394 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45546 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00292 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99952 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47434 * 324.99896 * 9 8 6 11 11 C 1.53002 * 109.47141 * 85.00350 * 9 8 6 12 12 C 1.53001 * 109.46953 * 205.00156 * 9 8 6 13 13 C 1.52998 * 109.47213 * 65.00246 * 12 9 8 14 14 N 1.46903 * 109.46783 * 179.97438 * 13 12 9 15 15 C 1.46906 * 110.99706 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47223 * 180.02562 * 15 14 13 17 17 O 1.21294 * 119.99970 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00218 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00046 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99912 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99891 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99993 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46857 * 89.99661 * 23 21 19 25 25 H 1.48498 * 109.46933 * 209.99709 * 23 21 19 26 26 H 1.48496 * 109.47225 * 329.99670 * 23 21 19 27 27 S 1.70618 * 124.52386 * 179.69971 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99992 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00092 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00073 * 1 2 3 31 31 H 1.08000 * 122.45199 * 359.97438 * 3 2 1 32 32 H 1.07992 * 123.35651 * 180.02562 * 4 3 2 33 33 H 0.97001 * 120.00016 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47032 * 180.02562 * 11 9 8 35 35 H 1.09003 * 109.46697 * 300.00083 * 11 9 8 36 36 H 1.09001 * 109.47328 * 59.99481 * 11 9 8 37 37 H 1.09003 * 109.47280 * 185.00351 * 12 9 8 38 38 H 1.08998 * 109.47004 * 304.99552 * 12 9 8 39 39 H 1.09001 * 109.47064 * 299.99448 * 13 12 9 40 40 H 1.08995 * 109.47201 * 60.00278 * 13 12 9 41 41 H 1.00899 * 111.00123 * 303.94797 * 14 13 12 42 42 H 1.09002 * 109.47031 * 299.99598 * 15 14 13 43 43 H 1.08996 * 109.47182 * 59.99761 * 15 14 13 44 44 H 0.96992 * 119.99859 * 0.02562 * 18 16 15 45 45 H 0.96998 * 119.99769 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3123 -0.9882 -0.0004 7 8 6.2659 -0.2320 -0.0010 8 7 5.5097 -2.3215 0.0002 9 6 6.8719 -2.8603 -0.0003 10 1 7.5191 -2.2116 -0.5905 11 6 7.3933 -2.9303 1.4364 12 6 6.8649 -4.2640 -0.6092 13 6 6.4629 -4.1786 -2.0829 14 7 6.4567 -5.5262 -2.6676 15 6 6.0749 -5.4832 -4.0855 16 6 6.0791 -6.8806 -4.6496 17 8 6.3719 -7.8200 -3.9404 18 7 5.7576 -7.0866 -5.9421 19 6 5.7619 -8.3578 -6.4554 20 1 6.0226 -9.1943 -5.8238 21 6 5.4299 -8.5702 -7.7878 22 7 5.4336 -9.7889 -8.2797 23 14 4.9783 -7.1236 -8.8799 24 1 6.2038 -6.5913 -9.5281 25 1 4.0209 -7.5709 -9.9232 26 1 4.3514 -6.0586 -8.0566 27 16 2.4740 -1.4057 0.0074 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.8429 2.0965 -0.0004 32 1 4.3550 1.6702 -0.0002 33 1 4.7497 -2.9243 0.0010 34 1 8.4071 -3.3308 1.4360 35 1 7.3982 -1.9303 1.8702 36 1 6.7461 -3.5791 2.0266 37 1 7.8607 -4.6999 -0.5289 38 1 6.1506 -4.8889 -0.0732 39 1 5.4670 -3.7428 -2.1632 40 1 7.1773 -3.5537 -2.6188 41 1 7.3518 -5.9763 -2.5481 42 1 5.0763 -5.0566 -4.1801 43 1 6.7866 -4.8670 -4.6349 44 1 5.5238 -6.3353 -6.5093 45 1 5.2021 -9.9371 -9.2099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568598359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:03 Heat of formation + Delta-G solvation = -47.161504 kcal Electronic energy + Delta-G solvation = -25769.094503 eV Core-core repulsion = 21912.892512 eV Total energy + Delta-G solvation = -3856.201991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20578 -38.54811 -38.24950 -36.90974 -35.08300 -33.88965 -32.72800 -31.76423 -31.59968 -29.41695 -27.59874 -26.39380 -24.25000 -23.86479 -22.63746 -21.96328 -20.94901 -19.63691 -19.34115 -18.42468 -18.26640 -16.70492 -16.39843 -16.08435 -15.65784 -15.45228 -15.23914 -14.87049 -14.44730 -14.35471 -14.17095 -13.91850 -13.78004 -13.61056 -13.47976 -13.02887 -12.89549 -12.78099 -12.48370 -12.40641 -12.33336 -12.23896 -12.15006 -11.71639 -11.38123 -11.34384 -11.29679 -11.15343 -10.99396 -10.59965 -10.32114 -9.98095 -9.57852 -9.46776 -9.02703 -8.98997 -8.60503 -8.20833 -8.15218 -6.31657 -3.83089 0.11012 1.04137 1.46009 1.99912 2.81105 2.91661 3.02457 3.06478 3.14687 3.73489 3.97554 4.09917 4.29907 4.46778 4.69046 4.71834 4.74841 4.87537 4.91919 4.94396 5.00852 5.15444 5.19710 5.23616 5.28704 5.42463 5.45615 5.50913 5.55628 5.59175 5.65357 5.75348 5.80015 5.83927 5.89693 5.94216 5.96204 6.03025 6.21179 7.06663 7.13811 7.55411 7.58075 7.85446 8.13930 8.59266 8.94365 9.41930 9.82115 10.81456 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.002221 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.949549 B =12605.193113 C =14277.464433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.193 4.193 3 C -0.159 4.159 4 C -0.050 4.050 5 C -0.273 4.273 6 C 0.593 3.407 7 O -0.531 6.531 8 N -0.720 5.720 9 C 0.144 3.856 10 H 0.091 0.909 11 C -0.163 4.163 12 C -0.127 4.127 13 C 0.058 3.942 14 N -0.669 5.669 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 S 0.205 5.795 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 23.411 18.467 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.313 4.313 3 C -0.189 4.189 4 C -0.083 4.083 5 C -0.393 4.393 6 C 0.379 3.621 7 O -0.410 6.410 8 N -0.371 5.371 9 C 0.040 3.960 10 H 0.109 0.891 11 C -0.221 4.221 12 C -0.165 4.165 13 C -0.072 4.072 14 N -0.301 5.301 15 C -0.085 4.085 16 C 0.236 3.764 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 S 0.473 5.527 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.987 21.422 18.978 29.460 hybrid contribution 0.194 2.754 -1.546 3.164 sum -6.792 24.175 17.433 30.569 Atomic orbital electron populations 1.20430 0.87265 1.03602 1.03339 1.24290 1.01704 0.97794 1.07475 1.19979 0.92628 0.99660 1.06657 1.20753 0.96186 0.95196 0.96181 1.24595 0.96931 0.98176 1.19645 1.16936 0.86749 0.82316 0.76070 1.90827 1.41839 1.58062 1.50253 1.46021 1.09515 1.06186 1.75425 1.21029 0.82699 0.95048 0.97233 0.89094 1.22169 1.01522 1.02505 0.95914 1.21893 1.03691 0.95151 0.95748 1.21974 1.00863 0.90259 0.94063 1.60083 1.37760 1.17575 1.14717 1.21704 1.01429 0.96439 0.88950 1.19706 0.84125 0.89976 0.82621 1.90563 1.52055 1.43548 1.58502 1.42212 1.62414 1.08892 1.09509 1.19434 1.44117 0.84388 0.95424 0.86271 1.25043 0.97670 0.96699 0.96772 1.69623 1.47760 1.19519 1.15226 0.86671 0.79216 0.82268 0.81239 1.19652 1.20150 1.19475 1.83111 0.94181 1.07432 1.67988 0.90157 0.90201 0.90923 0.83792 0.82990 0.76629 0.91245 0.92077 0.92205 0.89866 0.90056 0.91218 0.95375 0.82986 0.89561 0.93767 0.79689 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.31 36.01 0.37 -0.03 16 2 C -0.19 -1.34 6.28 -35.86 -0.23 -1.57 16 3 C -0.16 -1.15 9.99 -41.41 -0.41 -1.57 16 4 C -0.05 -0.44 10.01 -40.43 -0.40 -0.85 16 5 C -0.27 -2.64 6.45 -36.79 -0.24 -2.88 16 6 C 0.59 6.68 7.75 -12.90 -0.10 6.58 16 7 O -0.53 -7.65 16.50 5.19 0.09 -7.56 16 8 N -0.72 -6.64 4.53 -55.15 -0.25 -6.89 16 9 C 0.14 1.31 2.57 -67.93 -0.17 1.13 16 10 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 11 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 12 C -0.13 -1.16 5.01 -26.73 -0.13 -1.29 16 13 C 0.06 0.66 5.57 -3.82 -0.02 0.64 16 14 N -0.67 -10.07 6.13 -115.06 -0.70 -10.77 16 15 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 16 C 0.45 10.22 7.82 -10.99 -0.09 10.14 16 17 O -0.56 -15.14 15.78 5.55 0.09 -15.06 16 18 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 19 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 23 Si 0.88 19.39 27.74 -169.99 -4.71 14.68 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 27 S 0.21 1.53 22.10 -107.50 -2.38 -0.85 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.40 3.12 7.72 -40.82 -0.31 2.80 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -34.72 394.25 -9.29 -44.01 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.73 Total: 13.35 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.35 Total: 2.32 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.24 Total: -56.83 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.62 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.38 Total: -0.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.72 -9.29 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568598359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.151 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds